Wall clock time and date at job start Tue Mar 31 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47137 * 2 1 4 4 C 1.36941 * 119.99703 * 272.13868 * 3 2 1 5 5 H 1.07996 * 119.99973 * 8.56272 * 4 3 2 6 6 C 1.38811 * 119.99948 * 188.56946 * 4 3 2 7 7 N 1.31619 * 120.00300 * 24.82167 * 6 4 3 8 8 Si 1.86810 * 119.99922 * 204.82279 * 6 4 3 9 9 H 1.48495 * 109.46832 * 60.00073 * 8 6 4 10 10 H 1.48500 * 109.46726 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47002 * 299.99767 * 8 6 4 12 12 C 1.46492 * 120.00530 * 92.13430 * 3 2 1 13 13 C 1.50707 * 109.47079 * 89.99909 * 12 3 2 14 14 O 1.21273 * 119.99898 * 0.02562 * 13 12 3 15 15 N 1.34772 * 119.99938 * 180.02562 * 13 12 3 16 16 C 1.46929 * 120.63246 * 180.02562 * 15 13 12 17 17 C 1.53182 * 108.89382 * 233.55993 * 16 15 13 18 18 C 1.53071 * 109.29773 * 305.57708 * 17 16 15 19 19 C 1.50703 * 109.44253 * 181.23762 * 18 17 16 20 20 O 1.20836 * 119.99590 * 239.79322 * 19 18 17 21 21 O 1.34221 * 120.00076 * 59.79730 * 19 18 17 22 22 C 1.53039 * 109.66014 * 61.15187 * 18 17 16 23 23 C 1.46928 * 120.63325 * 0.02562 * 15 13 12 24 24 H 1.08997 * 109.47273 * 299.99799 * 1 2 3 25 25 H 1.08997 * 109.47213 * 60.00463 * 1 2 3 26 26 H 1.09010 * 109.47038 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47017 * 239.99725 * 2 1 3 28 28 H 1.09006 * 109.47399 * 119.99407 * 2 1 3 29 29 H 0.97000 * 120.00332 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47087 * 330.00107 * 12 3 2 31 31 H 1.09005 * 109.47599 * 210.00124 * 12 3 2 32 32 H 1.09001 * 109.58175 * 353.42127 * 16 15 13 33 33 H 1.08996 * 109.58859 * 113.69762 * 16 15 13 34 34 H 1.09002 * 109.50201 * 65.38724 * 17 16 15 35 35 H 1.09002 * 109.50143 * 185.48009 * 17 16 15 36 36 H 1.08999 * 109.34654 * 301.12942 * 18 17 16 37 37 H 0.96697 * 117.00215 * 180.02562 * 21 19 18 38 38 H 1.09004 * 109.49892 * 178.74952 * 22 18 17 39 39 H 1.09006 * 109.52415 * 58.66869 * 22 18 17 40 40 H 1.08996 * 109.59072 * 246.16037 * 23 15 13 41 41 H 1.08997 * 109.58535 * 6.44251 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2048 2.0414 -1.1852 5 1 1.8638 1.5987 -2.1093 6 6 2.8321 3.2796 -1.1986 7 7 3.6608 3.6081 -0.2302 8 14 2.5003 4.4798 -2.5912 9 1 1.0530 4.8105 -2.6252 10 1 3.2861 5.7207 -2.3729 11 1 2.8975 3.8623 -3.8820 12 6 2.3070 2.0561 1.2677 13 6 3.7447 1.8142 1.6495 14 8 4.4579 1.1445 0.9330 15 7 4.2377 2.3423 2.7873 16 6 5.6374 2.1158 3.1727 17 6 5.6747 1.5502 4.5958 18 6 4.9054 2.4853 5.5321 19 6 4.9658 1.9477 6.9387 20 8 3.9458 1.6662 7.5221 21 8 6.1525 1.7818 7.5433 22 6 3.4451 2.5762 5.0833 23 6 3.3859 3.1554 3.6659 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0278 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 4.0989 4.4735 -0.2394 30 1 1.6532 1.6625 2.0460 31 1 2.1358 3.1269 1.1566 32 1 6.0953 1.4050 2.4847 33 1 6.1826 3.0590 3.1399 34 1 5.2105 0.5640 4.6077 35 1 6.7097 1.4696 4.9282 36 1 5.3566 3.4771 5.5027 37 1 6.1408 1.4338 8.4454 38 1 2.8947 3.2250 5.7646 39 1 2.9997 1.5813 5.0888 40 1 3.7472 4.1837 3.6757 41 1 2.3587 3.1325 3.3021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:30 Heat of formation + Delta-G solvation = -123.605984 kcal Electronic energy + Delta-G solvation = -23747.551790 eV Core-core repulsion = 20241.380050 eV Total energy + Delta-G solvation = -3506.171740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57697 -40.43853 -38.26700 -37.14395 -36.89883 -33.89856 -33.74445 -32.18660 -30.85002 -28.78862 -27.07235 -25.43151 -24.16406 -23.39574 -22.22752 -21.32142 -19.94303 -19.02350 -18.47242 -18.03466 -17.31305 -16.97716 -16.65806 -16.32523 -15.85412 -15.54117 -15.26169 -14.90058 -14.73458 -14.56879 -14.10316 -14.03717 -13.73525 -13.38978 -13.24491 -13.08558 -12.80467 -12.76092 -12.51851 -12.50050 -12.28241 -12.20380 -12.00141 -11.76684 -11.73636 -11.65161 -11.56526 -11.39309 -10.67646 -10.14883 -9.24851 -8.81840 -7.83134 -5.09553 1.20587 1.50265 1.51551 1.58734 2.10888 2.41811 2.48829 2.65355 3.31482 3.59496 3.67079 3.71586 4.00797 4.13233 4.30035 4.36716 4.39090 4.45707 4.56242 4.64839 4.76271 4.79994 4.81545 4.86456 4.95375 4.98276 5.06647 5.09034 5.14597 5.25805 5.27960 5.33452 5.60096 5.63759 5.68904 6.02051 6.30994 6.88603 7.02551 7.18928 7.83874 8.05534 8.31709 9.23866 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.022592 B = 0.004732 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.052678 B = 5915.591857 C = 6479.408964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 N -0.595 5.595 4 C -0.259 4.259 5 H 0.069 0.931 6 C -0.047 4.047 7 N -0.914 5.914 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.290 1.290 12 C 0.168 3.832 13 C 0.534 3.466 14 O -0.587 6.587 15 N -0.628 5.628 16 C 0.117 3.883 17 C -0.108 4.108 18 C -0.075 4.075 19 C 0.494 3.506 20 O -0.548 6.548 21 O -0.509 6.509 22 C -0.110 4.110 23 C 0.118 3.882 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.037 0.963 29 H 0.246 0.754 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.427 0.573 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 -0.331 15.928 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 N -0.316 5.316 4 C -0.388 4.388 5 H 0.087 0.913 6 C -0.242 4.242 7 N -0.561 5.561 8 Si 0.791 3.209 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.216 1.216 12 C 0.038 3.962 13 C 0.323 3.677 14 O -0.466 6.466 15 N -0.365 5.365 16 C -0.006 4.006 17 C -0.146 4.146 18 C -0.094 4.094 19 C 0.337 3.663 20 O -0.439 6.439 21 O -0.322 6.322 22 C -0.148 4.148 23 C -0.005 4.005 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.288 0.712 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.566 -0.504 15.273 15.361 hybrid contribution 0.291 0.405 -0.411 0.646 sum 1.857 -0.099 14.862 14.978 Atomic orbital electron populations 1.22121 0.96344 1.01104 1.01260 1.20863 0.94155 0.84821 0.98598 1.44198 1.74525 1.10761 1.02075 1.19409 1.32214 0.99965 0.87256 0.91309 1.25313 0.97605 1.00686 1.00619 1.70064 1.28455 1.21267 1.36281 0.85422 0.77650 0.78601 0.79205 1.20414 1.22148 1.21627 1.20705 0.89798 0.99046 0.86662 1.22098 0.92113 0.75645 0.77837 1.90453 1.61698 1.42930 1.51477 1.48300 1.11422 1.53633 1.23126 1.21332 0.83626 1.00707 0.94937 1.21792 1.01816 0.97798 0.93194 1.21059 0.98999 1.02411 0.86929 1.23532 0.80507 0.73217 0.89007 1.90715 1.37111 1.48879 1.67185 1.84505 1.33652 1.78025 1.36059 1.21790 0.94214 1.02755 0.96050 1.21664 0.95719 0.94545 0.88538 0.93036 0.93912 0.91190 0.95176 0.94432 0.94453 0.91971 0.89550 0.92260 0.91279 0.92585 0.87700 0.84947 0.71155 0.88463 0.92097 0.90652 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 10.23 71.98 0.74 -4.39 16 2 C 0.14 6.08 6.39 86.38 0.55 6.63 16 3 N -0.59 -30.20 2.02 -706.35 -1.43 -31.63 16 4 C -0.26 -14.46 9.70 84.03 0.82 -13.64 16 5 H 0.07 3.83 7.94 -2.91 -0.02 3.81 16 6 C -0.05 -2.61 4.90 84.86 0.42 -2.20 16 7 N -0.91 -51.76 8.96 21.65 0.19 -51.56 16 8 Si 0.96 45.21 29.62 68.60 2.03 47.24 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 12 C 0.17 7.78 3.77 85.64 0.32 8.10 16 13 C 0.53 25.40 5.76 87.66 0.50 25.91 16 14 O -0.59 -33.86 15.57 -3.01 -0.05 -33.91 16 15 N -0.63 -23.07 2.97 -818.86 -2.44 -25.51 16 16 C 0.12 3.72 6.43 86.36 0.55 4.28 16 17 C -0.11 -2.48 5.31 30.68 0.16 -2.31 16 18 C -0.07 -1.49 2.58 -11.50 -0.03 -1.52 16 19 C 0.49 9.91 7.63 71.24 0.54 10.45 16 20 O -0.55 -14.44 16.74 21.94 0.37 -14.07 16 21 O -0.51 -7.21 13.30 -51.33 -0.68 -7.89 16 22 C -0.11 -2.48 4.66 30.68 0.14 -2.34 16 23 C 0.12 3.28 6.34 86.37 0.55 3.83 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 28 H 0.04 1.56 8.06 -2.38 -0.02 1.54 16 29 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.06 2.46 7.62 -2.39 -0.02 2.44 16 31 H 0.09 4.27 6.10 -2.38 -0.01 4.26 16 32 H 0.06 2.28 7.00 -2.39 -0.02 2.26 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.94 8.09 -2.39 -0.02 1.92 16 36 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.43 2.45 9.10 -74.06 -0.67 1.78 16 38 H 0.10 1.89 8.07 -2.38 -0.02 1.87 16 39 H 0.06 1.57 8.13 -2.38 -0.02 1.55 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 2.44 5.93 -2.39 -0.01 2.43 16 Total: -1.00 -75.52 333.60 3.63 -71.89 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.36 Total: 12.64 kcal Atomic # 6 Polarization: 27.52 SS G_CDS: 5.27 Total: 32.79 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -3.67 Total: -108.70 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.36 Total: -55.87 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.52 3.63 -71.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.712 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds