Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00148 * 2 1 4 4 C 1.50699 * 109.46927 * 75.32591 * 3 2 1 5 5 H 1.07997 * 120.00235 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99695 * 180.02562 * 6 4 3 8 8 Si 1.86792 * 119.99994 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47428 * 270.00466 * 8 6 4 10 10 H 1.48502 * 109.47067 * 30.00467 * 8 6 4 11 11 H 1.48508 * 109.47156 * 150.00041 * 8 6 4 12 12 C 1.46900 * 110.99908 * 236.04824 * 2 1 3 13 13 H 1.08998 * 109.40145 * 178.03525 * 12 2 1 14 14 C 1.53073 * 109.40011 * 58.29480 * 12 2 1 15 15 C 1.53343 * 108.43570 * 190.98493 * 14 12 2 16 16 C 1.52920 * 108.66184 * 67.52989 * 15 14 12 17 17 N 1.45759 * 110.48813 * 309.23253 * 16 15 14 18 18 C 1.46507 * 117.94507 * 199.07222 * 17 16 15 19 19 C 1.52996 * 109.47034 * 270.02095 * 18 17 16 20 20 C 1.50702 * 109.46765 * 179.97438 * 19 18 17 21 21 O 1.20823 * 120.00305 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00044 * 179.97438 * 20 19 18 23 23 C 1.33346 * 124.10805 * 19.09323 * 17 16 15 24 24 O 1.21275 * 118.24741 * 177.75265 * 23 17 16 25 25 H 1.08997 * 109.47421 * 59.99541 * 1 2 3 26 26 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47046 * 299.99827 * 1 2 3 28 28 H 1.09000 * 109.46962 * 315.32522 * 3 2 1 29 29 H 1.08998 * 109.47584 * 195.32305 * 3 2 1 30 30 H 0.97003 * 119.99299 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.67086 * 310.70291 * 14 12 2 32 32 H 1.09006 * 109.67089 * 71.23811 * 14 12 2 33 33 H 1.09000 * 109.62599 * 307.77512 * 15 14 12 34 34 H 1.08991 * 109.59961 * 187.27794 * 15 14 12 35 35 H 1.09001 * 109.30610 * 188.91959 * 16 15 14 36 36 H 1.09001 * 109.30338 * 69.54676 * 16 15 14 37 37 H 1.09002 * 109.46799 * 30.02317 * 18 17 16 38 38 H 1.09004 * 109.46999 * 150.01699 * 18 17 16 39 39 H 1.08995 * 109.47210 * 299.99512 * 19 18 17 40 40 H 1.09000 * 109.47214 * 60.00286 * 19 18 17 41 41 H 0.96695 * 117.00103 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8395 1.9693 1.3745 5 1 1.3934 1.3888 2.1685 6 6 2.2652 3.2579 1.6181 7 7 2.1295 3.7795 2.8178 8 14 3.0360 4.2623 0.2447 9 1 4.5048 4.0435 0.2357 10 1 2.4645 3.8389 -1.0589 11 1 2.7515 5.7031 0.4653 12 6 1.9954 -0.7659 -1.1376 13 1 3.0844 -0.7199 -1.1323 14 6 1.4692 -0.1640 -2.4430 15 6 1.7978 -1.1285 -3.5889 16 6 0.9711 -2.4023 -3.4085 17 7 1.1201 -2.9197 -2.0540 18 6 0.7682 -4.3211 -1.8117 19 6 -0.7100 -4.4169 -1.4291 20 6 -1.0720 -5.8585 -1.1805 21 8 -0.2336 -6.7207 -1.2969 22 8 -2.3257 -6.1847 -0.8287 23 6 1.5561 -2.1973 -1.0214 24 8 1.5998 -2.7242 0.0700 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.4434 1.9725 -0.7225 29 1 3.0510 1.3555 -0.2716 30 1 2.4294 4.6860 2.9893 31 1 0.3898 -0.0287 -2.3757 32 1 1.9496 0.7977 -2.6234 33 1 2.8592 -1.3753 -3.5667 34 1 1.5482 -0.6625 -4.5420 35 1 1.3090 -3.1551 -4.1208 36 1 -0.0794 -2.1797 -3.5956 37 1 0.9480 -4.9023 -2.7161 38 1 1.3800 -4.7141 -0.9997 39 1 -0.8897 -3.8357 -0.5247 40 1 -1.3217 -4.0239 -2.2411 41 1 -2.5102 -7.1222 -0.6803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598468587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = -112.163766 kcal Electronic energy + Delta-G solvation = -23340.900477 eV Core-core repulsion = 19835.224908 eV Total energy + Delta-G solvation = -3505.675569 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88415 -40.26095 -37.10305 -36.49281 -36.22782 -33.77477 -32.37160 -30.74566 -29.05876 -27.74406 -25.73821 -25.23112 -23.15536 -22.36162 -21.31280 -20.20075 -18.51587 -18.20048 -17.19458 -17.00281 -16.55906 -16.11331 -15.98182 -15.53548 -14.78006 -14.36039 -14.25281 -13.96640 -13.77451 -13.48995 -13.28635 -13.17391 -13.01086 -12.43199 -12.27899 -11.94870 -11.80353 -11.53423 -11.36011 -11.20986 -11.17720 -11.12859 -10.95568 -10.85614 -10.48438 -10.47127 -9.97191 -9.37472 -9.26978 -8.81969 -8.56293 -7.37784 -6.03748 -4.00987 1.95325 2.52137 2.87674 3.17135 3.26992 3.33546 3.34662 4.40850 4.45643 4.53847 4.61249 4.65244 4.74883 4.86288 5.03748 5.06842 5.20607 5.26609 5.28284 5.40245 5.44299 5.55120 5.72233 5.77258 5.80528 5.94764 6.00984 6.01819 6.22792 6.30852 6.38350 6.59125 6.76721 6.87729 7.40286 7.58838 7.62096 7.81866 7.92739 8.39471 8.65765 9.08409 9.56988 11.09643 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026555 B = 0.004029 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.159957 B = 6948.273475 C = 7586.319544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.505 5.505 3 C 0.165 3.835 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.268 1.268 11 H -0.286 1.286 12 C 0.074 3.926 13 H 0.107 0.893 14 C -0.164 4.164 15 C -0.131 4.131 16 C 0.115 3.885 17 N -0.612 5.612 18 C 0.123 3.877 19 C -0.131 4.131 20 C 0.487 3.513 21 O -0.517 6.517 22 O -0.517 6.517 23 C 0.523 3.477 24 O -0.519 6.519 25 H 0.018 0.982 26 H 0.046 0.954 27 H 0.080 0.920 28 H -0.005 1.005 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 -14.984 -16.766 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.228 5.228 3 C 0.040 3.960 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.193 1.193 11 H -0.212 1.212 12 C -0.038 4.038 13 H 0.125 0.875 14 C -0.203 4.203 15 C -0.169 4.169 16 C -0.008 4.008 17 N -0.347 5.347 18 C -0.001 4.001 19 C -0.170 4.170 20 C 0.329 3.671 21 O -0.406 6.406 22 O -0.329 6.329 23 C 0.311 3.689 24 O -0.392 6.392 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.012 0.988 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -5.746 -15.092 -15.696 22.520 hybrid contribution -0.030 0.479 -1.389 1.470 sum -5.776 -14.613 -17.085 23.212 Atomic orbital electron populations 1.22314 0.88182 0.99764 1.01155 1.61982 1.07385 1.16492 1.36906 1.20224 0.94411 0.83215 0.98192 1.21025 1.40327 0.98242 0.94900 0.89997 1.24895 0.95671 0.97452 0.95327 1.69899 1.47781 1.15616 1.20548 0.86892 0.80178 0.79780 0.83053 1.20141 1.19320 1.21191 1.21707 1.01462 0.90035 0.90587 0.87488 1.22488 1.02922 0.99905 0.95018 1.21830 1.00645 0.94877 0.99590 1.21416 1.00212 0.96445 0.82720 1.47459 1.66459 1.11379 1.09424 1.21181 0.92889 0.82543 1.03480 1.21746 0.99431 0.89957 1.05847 1.23351 0.79327 0.92373 0.72027 1.90732 1.49985 1.51628 1.48231 1.84552 1.32248 1.35195 1.80913 1.20279 0.76446 0.88718 0.83490 1.90713 1.52501 1.70502 1.25487 0.96415 0.93476 0.90094 0.98778 0.95930 0.92666 0.90558 0.90335 0.90866 0.89940 0.90787 0.91939 0.89802 0.88528 0.86806 0.87642 0.73140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 8.66 60.06 0.52 1.17 16 2 N -0.50 -10.67 4.42 -238.00 -1.05 -11.72 16 3 C 0.17 3.91 3.07 -4.98 -0.02 3.89 16 4 C -0.51 -14.46 9.24 -34.44 -0.32 -14.78 16 5 H 0.08 2.60 7.95 -52.49 -0.42 2.18 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 8 Si 0.87 21.06 27.47 -169.99 -4.67 16.40 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.07 1.25 2.39 -69.08 -0.17 1.08 16 13 H 0.11 1.81 7.93 -51.93 -0.41 1.40 16 14 C -0.16 -2.14 4.66 -26.52 -0.12 -2.26 16 15 C -0.13 -1.19 6.02 -26.59 -0.16 -1.35 16 16 C 0.11 0.96 6.39 -4.48 -0.03 0.93 16 17 N -0.61 -7.24 2.81 -174.96 -0.49 -7.74 16 18 C 0.12 1.35 4.49 -4.04 -0.02 1.33 16 19 C -0.13 -1.27 6.13 -27.88 -0.17 -1.44 16 20 C 0.49 4.98 8.33 36.01 0.30 5.28 16 21 O -0.52 -6.72 16.74 -18.75 -0.31 -7.03 16 22 O -0.52 -4.15 13.42 -39.26 -0.53 -4.68 16 23 C 0.52 8.46 5.76 -11.87 -0.07 8.39 16 24 O -0.52 -10.49 15.77 5.56 0.09 -10.40 16 25 H 0.02 0.30 6.21 -51.93 -0.32 -0.02 16 26 H 0.05 0.83 6.91 -51.93 -0.36 0.48 16 27 H 0.08 1.71 7.54 -51.93 -0.39 1.32 16 28 H -0.01 -0.13 6.64 -51.93 -0.34 -0.47 16 29 H 0.02 0.53 7.23 -51.93 -0.38 0.15 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.08 1.00 5.92 -51.93 -0.31 0.70 16 32 H 0.08 1.08 7.59 -51.93 -0.39 0.69 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.75 7.82 -51.93 -0.41 0.35 16 38 H 0.10 1.33 7.16 -51.93 -0.37 0.96 16 39 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.41 1.54 9.10 45.56 0.41 1.95 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -35.72 330.88 -6.93 -42.65 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.38 Total: 0.27 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.35 Total: 4.13 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.77 Total: -46.31 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.75 Total: -22.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.72 -6.93 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.516 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds