Wall clock time and date at job start Tue Mar 31 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00148 * 2 1 4 4 C 1.50699 * 109.46927 * 75.32591 * 3 2 1 5 5 H 1.07997 * 120.00235 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99695 * 180.02562 * 6 4 3 8 8 Si 1.86792 * 119.99994 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.47428 * 270.00466 * 8 6 4 10 10 H 1.48502 * 109.47067 * 30.00467 * 8 6 4 11 11 H 1.48508 * 109.47156 * 150.00041 * 8 6 4 12 12 C 1.46900 * 110.99908 * 236.04824 * 2 1 3 13 13 H 1.08998 * 109.40145 * 178.03525 * 12 2 1 14 14 C 1.53073 * 109.40011 * 58.29480 * 12 2 1 15 15 C 1.53343 * 108.43570 * 190.98493 * 14 12 2 16 16 C 1.52920 * 108.66184 * 67.52989 * 15 14 12 17 17 N 1.45759 * 110.48813 * 309.23253 * 16 15 14 18 18 C 1.46507 * 117.94507 * 199.07222 * 17 16 15 19 19 C 1.52996 * 109.47034 * 270.02095 * 18 17 16 20 20 C 1.50702 * 109.46765 * 179.97438 * 19 18 17 21 21 O 1.20823 * 120.00305 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00044 * 179.97438 * 20 19 18 23 23 C 1.33346 * 124.10805 * 19.09323 * 17 16 15 24 24 O 1.21275 * 118.24741 * 177.75265 * 23 17 16 25 25 H 1.08997 * 109.47421 * 59.99541 * 1 2 3 26 26 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47046 * 299.99827 * 1 2 3 28 28 H 1.09000 * 109.46962 * 315.32522 * 3 2 1 29 29 H 1.08998 * 109.47584 * 195.32305 * 3 2 1 30 30 H 0.97003 * 119.99299 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.67086 * 310.70291 * 14 12 2 32 32 H 1.09006 * 109.67089 * 71.23811 * 14 12 2 33 33 H 1.09000 * 109.62599 * 307.77512 * 15 14 12 34 34 H 1.08991 * 109.59961 * 187.27794 * 15 14 12 35 35 H 1.09001 * 109.30610 * 188.91959 * 16 15 14 36 36 H 1.09001 * 109.30338 * 69.54676 * 16 15 14 37 37 H 1.09002 * 109.46799 * 30.02317 * 18 17 16 38 38 H 1.09004 * 109.46999 * 150.01699 * 18 17 16 39 39 H 1.08995 * 109.47210 * 299.99512 * 19 18 17 40 40 H 1.09000 * 109.47214 * 60.00286 * 19 18 17 41 41 H 0.96695 * 117.00103 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.8395 1.9693 1.3745 5 1 1.3934 1.3888 2.1685 6 6 2.2652 3.2579 1.6181 7 7 2.1295 3.7795 2.8178 8 14 3.0360 4.2623 0.2447 9 1 4.5048 4.0435 0.2357 10 1 2.4645 3.8389 -1.0589 11 1 2.7515 5.7031 0.4653 12 6 1.9954 -0.7659 -1.1376 13 1 3.0844 -0.7199 -1.1323 14 6 1.4692 -0.1640 -2.4430 15 6 1.7978 -1.1285 -3.5889 16 6 0.9711 -2.4023 -3.4085 17 7 1.1201 -2.9197 -2.0540 18 6 0.7682 -4.3211 -1.8117 19 6 -0.7100 -4.4169 -1.4291 20 6 -1.0720 -5.8585 -1.1805 21 8 -0.2336 -6.7207 -1.2969 22 8 -2.3257 -6.1847 -0.8287 23 6 1.5561 -2.1973 -1.0214 24 8 1.5998 -2.7242 0.0700 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.4434 1.9725 -0.7225 29 1 3.0510 1.3555 -0.2716 30 1 2.4294 4.6860 2.9893 31 1 0.3898 -0.0287 -2.3757 32 1 1.9496 0.7977 -2.6234 33 1 2.8592 -1.3753 -3.5667 34 1 1.5482 -0.6625 -4.5420 35 1 1.3090 -3.1551 -4.1208 36 1 -0.0794 -2.1797 -3.5956 37 1 0.9480 -4.9023 -2.7161 38 1 1.3800 -4.7141 -0.9997 39 1 -0.8897 -3.8357 -0.5247 40 1 -1.3217 -4.0239 -2.2411 41 1 -2.5102 -7.1222 -0.6803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598468587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:08 Heat of formation + Delta-G solvation = -140.677265 kcal Electronic energy + Delta-G solvation = -23342.136915 eV Core-core repulsion = 19835.224908 eV Total energy + Delta-G solvation = -3506.912007 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95031 -41.15035 -38.50762 -37.48817 -37.12049 -35.11233 -34.22012 -31.70649 -30.51327 -29.36537 -26.86074 -26.47690 -24.63216 -23.28385 -22.32089 -21.69688 -19.43204 -19.09833 -19.04090 -18.03731 -17.66479 -17.20653 -16.93606 -16.80756 -16.26862 -15.93046 -15.43035 -15.11682 -14.93396 -14.61003 -14.50129 -14.35031 -14.13145 -14.06105 -13.36886 -13.17889 -12.97532 -12.68767 -12.59668 -12.57619 -12.37953 -12.31308 -12.15087 -12.01665 -11.91606 -11.76878 -11.69128 -11.50078 -10.76647 -10.58423 -9.78102 -8.94100 -8.25867 -6.30376 1.15982 1.36789 1.39826 1.49686 1.53360 1.77723 2.34686 2.36927 3.06777 3.19533 3.56644 3.73480 3.82491 3.83708 3.99435 4.09344 4.27474 4.36495 4.37902 4.45023 4.50102 4.58756 4.68951 4.74197 4.81221 4.89460 4.90918 4.93655 5.07634 5.10075 5.15105 5.33393 5.47612 5.54724 5.59008 5.93905 6.24364 6.43913 6.64596 6.76382 6.95819 7.21405 7.32910 8.91669 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026555 B = 0.004029 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.159957 B = 6948.273475 C = 7586.319544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.539 5.539 3 C 0.181 3.819 4 C -0.520 4.520 5 H 0.026 0.974 6 C 0.004 3.996 7 N -0.952 5.952 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.239 1.239 11 H -0.283 1.283 12 C 0.070 3.930 13 H 0.100 0.900 14 C -0.157 4.157 15 C -0.123 4.123 16 C 0.105 3.895 17 N -0.598 5.598 18 C 0.123 3.877 19 C -0.125 4.125 20 C 0.494 3.506 21 O -0.549 6.549 22 O -0.513 6.513 23 C 0.523 3.477 24 O -0.574 6.574 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.007 0.993 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.139 0.861 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 -15.206 -21.399 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.263 5.263 3 C 0.054 3.946 4 C -0.558 4.558 5 H 0.044 0.956 6 C -0.193 4.193 7 N -0.593 5.593 8 Si 0.776 3.224 9 H -0.192 1.192 10 H -0.162 1.162 11 H -0.208 1.208 12 C -0.042 4.042 13 H 0.117 0.883 14 C -0.196 4.196 15 C -0.161 4.161 16 C -0.016 4.016 17 N -0.331 5.331 18 C 0.000 4.000 19 C -0.164 4.164 20 C 0.337 3.663 21 O -0.441 6.441 22 O -0.327 6.327 23 C 0.311 3.689 24 O -0.452 6.452 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.025 0.975 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.157 0.843 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -6.184 -15.360 -20.393 26.268 hybrid contribution 0.014 0.419 0.131 0.439 sum -6.170 -14.941 -20.262 25.920 Atomic orbital electron populations 1.22159 0.87377 1.00186 1.00581 1.61703 1.08436 1.15424 1.40696 1.19908 0.94895 0.84698 0.95068 1.21291 1.39926 0.98416 0.96216 0.95562 1.25951 0.96114 0.98798 0.98438 1.70085 1.49391 1.16320 1.23505 0.85635 0.79304 0.77409 0.80099 1.19173 1.16170 1.20840 1.21746 1.01084 0.90209 0.91147 0.88264 1.22411 1.02592 1.00480 0.94124 1.21848 1.00940 0.94167 0.99183 1.21832 1.01847 0.97085 0.80817 1.47451 1.64392 1.11273 1.09986 1.21214 0.93188 0.81985 1.03596 1.21671 0.99023 0.89629 1.06084 1.23359 0.79465 0.92207 0.71235 1.90727 1.50942 1.52528 1.49853 1.84507 1.30925 1.37072 1.80216 1.20178 0.76466 0.88560 0.83728 1.90696 1.55194 1.71454 1.27894 0.93851 0.92495 0.93617 0.97516 0.95378 0.92451 0.90403 0.90753 0.90755 0.86562 0.87401 0.89512 0.86915 0.92048 0.88830 0.84324 0.70934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.75 8.66 127.69 1.11 2.85 16 2 N -0.54 -23.18 4.42 -906.89 -4.01 -27.19 16 3 C 0.18 8.55 3.07 85.56 0.26 8.82 16 4 C -0.52 -30.96 9.24 25.60 0.24 -30.72 16 5 H 0.03 1.79 7.95 -2.91 -0.02 1.77 16 6 C 0.00 0.22 5.47 84.65 0.46 0.68 16 7 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 8 Si 0.95 43.18 27.47 68.60 1.88 45.07 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.07 2.29 2.39 44.03 0.11 2.39 16 13 H 0.10 3.33 7.93 -2.39 -0.02 3.31 16 14 C -0.16 -3.58 4.66 30.73 0.14 -3.44 16 15 C -0.12 -1.63 6.02 30.68 0.18 -1.45 16 16 C 0.11 1.23 6.39 86.49 0.55 1.78 16 17 N -0.60 -12.69 2.81 -826.63 -2.32 -15.01 16 18 C 0.12 2.49 4.49 86.38 0.39 2.88 16 19 C -0.13 -2.20 6.13 29.85 0.18 -2.02 16 20 C 0.49 9.38 8.33 71.24 0.59 9.97 16 21 O -0.55 -13.77 16.74 21.97 0.37 -13.40 16 22 O -0.51 -7.27 13.42 -51.43 -0.69 -7.96 16 23 C 0.52 16.67 5.76 87.71 0.50 17.18 16 24 O -0.57 -24.14 15.77 -3.01 -0.05 -24.19 16 25 H 0.04 1.43 6.21 -2.39 -0.01 1.41 16 26 H 0.06 2.05 6.91 -2.39 -0.02 2.03 16 27 H 0.04 2.05 7.54 -2.39 -0.02 2.03 16 28 H 0.01 0.32 6.64 -2.39 -0.02 0.30 16 29 H 0.03 1.29 7.23 -2.39 -0.02 1.28 16 30 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.08 1.76 5.92 -2.39 -0.01 1.74 16 32 H 0.07 1.78 7.59 -2.38 -0.02 1.76 16 33 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 34 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.67 7.92 -2.39 -0.02 0.65 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 1.64 7.82 -2.39 -0.02 1.62 16 38 H 0.06 1.71 7.16 -2.38 -0.02 1.70 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.43 2.41 9.10 -74.06 -0.67 1.73 16 Total: -1.00 -84.08 330.88 0.52 -83.57 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.31 Total: 10.68 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.72 Total: 8.92 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -6.03 Total: -102.69 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.37 Total: -45.55 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.88 Total: 45.07 kcal Total: -84.08 0.52 -83.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598468587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.108 kcal (2) G-P(sol) polarization free energy of solvation -84.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds