Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.38818 * 2 1 4 4 C 1.54629 * 110.42339 * 122.32842 * 2 1 3 5 5 N 1.48145 * 104.61800 * 94.89321 * 4 2 1 6 6 C 1.34772 * 127.84059 * 219.62260 * 5 4 2 7 7 O 1.21585 * 120.00374 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00214 * 0.02810 * 6 5 4 9 9 C 1.46494 * 120.00329 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47071 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47211 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00088 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99685 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99857 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47014 * 90.00174 * 15 13 11 17 17 H 1.48506 * 109.46924 * 209.99954 * 15 13 11 18 18 H 1.48496 * 109.47525 * 329.99794 * 15 13 11 19 19 C 1.48147 * 104.32335 * 39.64646 * 5 4 2 20 20 C 1.54282 * 110.34064 * 237.77295 * 2 1 3 21 21 C 1.52998 * 110.34553 * 0.10093 * 20 2 1 22 22 C 1.50696 * 110.34682 * 122.26199 * 20 2 1 23 23 O 1.20833 * 119.99655 * 358.51796 * 22 20 2 24 24 O 1.34222 * 120.00432 * 178.80064 * 22 20 2 25 25 H 1.08994 * 109.47632 * 182.23071 * 1 2 3 26 26 H 1.09006 * 109.47124 * 302.23055 * 1 2 3 27 27 H 1.09004 * 109.47369 * 62.22464 * 1 2 3 28 28 H 1.08999 * 110.35462 * 336.14037 * 4 2 1 29 29 H 1.08998 * 110.55889 * 213.75269 * 4 2 1 30 30 H 0.97004 * 119.99089 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47344 * 300.00305 * 9 8 6 32 32 H 1.09006 * 109.47006 * 60.00548 * 9 8 6 33 33 H 1.09004 * 109.47164 * 299.99876 * 10 9 8 34 34 H 1.08997 * 109.47069 * 60.00249 * 10 9 8 35 35 H 0.97006 * 119.99687 * 180.02562 * 14 13 11 36 36 H 1.09002 * 110.41015 * 201.62681 * 19 5 4 37 37 H 1.09005 * 110.50845 * 79.24575 * 19 5 4 38 38 H 1.09004 * 109.47506 * 181.47508 * 21 20 2 39 39 H 1.09000 * 109.47253 * 301.48093 * 21 20 2 40 40 H 1.09004 * 109.46434 * 61.47708 * 21 20 2 41 41 H 0.96701 * 117.00458 * 179.72178 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0696 -0.7749 1.2245 5 7 2.3146 -2.1464 0.7207 6 6 2.0779 -3.3135 1.3516 7 8 2.3357 -4.3660 0.8001 8 7 1.5552 -3.3142 2.5940 9 6 1.2974 -4.5829 3.2795 10 6 0.7077 -4.3040 4.6635 11 6 0.4430 -5.6091 5.3690 12 1 0.6728 -6.5439 4.8795 13 6 -0.0915 -5.6096 6.6400 14 7 -0.3220 -6.7486 7.2558 15 14 -0.4883 -3.9927 7.4870 16 1 -1.8837 -3.5967 7.1688 17 1 -0.3425 -4.1547 8.9560 18 1 0.4457 -2.9416 7.0098 19 6 2.8795 -1.9438 -0.6338 20 6 2.0663 -0.7714 -1.2237 21 6 0.9061 -1.3012 -2.0689 22 6 2.9556 0.1171 -2.0547 23 8 3.1317 1.2679 -1.7312 24 8 3.5475 -0.3682 -3.1573 25 1 -0.3634 -1.0268 0.0400 26 1 -0.3634 0.5481 0.8694 27 1 -0.3634 0.4789 -0.9093 28 1 1.3260 -0.7900 2.0213 29 1 2.9983 -0.3293 1.5806 30 1 1.3498 -2.4745 3.0340 31 1 0.5912 -5.1740 2.6965 32 1 2.2315 -5.1344 3.3866 33 1 1.4136 -3.7127 5.2468 34 1 -0.2264 -3.7527 4.5561 35 1 -0.6985 -6.7490 8.1499 36 1 2.7471 -2.8407 -1.2389 37 1 3.9355 -1.6806 -0.5717 38 1 1.3002 -1.8654 -2.9142 39 1 0.2793 -1.9514 -1.4586 40 1 0.3122 -0.4641 -2.4359 41 1 4.1055 0.2407 -3.6602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599920857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -120.589810 kcal Electronic energy + Delta-G solvation = -22965.026764 eV Core-core repulsion = 19458.985814 eV Total energy + Delta-G solvation = -3506.040949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42357 -39.81687 -38.12183 -36.49357 -34.97554 -33.61934 -32.70462 -31.50369 -30.09811 -27.62827 -26.13782 -25.19604 -23.92409 -22.53412 -20.83065 -19.94434 -19.30683 -18.31807 -18.14867 -17.17850 -16.88065 -16.09703 -15.57914 -15.56740 -14.67854 -14.57835 -14.23635 -14.03119 -13.85609 -13.60700 -13.44256 -13.25255 -12.75262 -12.62467 -12.51884 -12.19602 -12.01668 -11.83312 -11.49716 -11.35987 -11.21331 -11.05076 -11.02688 -10.79176 -10.39918 -10.27034 -9.98130 -9.79137 -9.33011 -8.92567 -8.62665 -8.37944 -6.11132 -4.11164 1.75986 2.44573 2.80143 3.24836 3.32579 3.33778 3.40697 3.87481 4.08786 4.28927 4.37494 4.38256 4.72719 4.82282 4.86552 5.09981 5.21639 5.21811 5.29366 5.38829 5.41315 5.45041 5.51925 5.69196 5.72418 5.75788 5.93296 6.05563 6.09458 6.17439 6.23570 6.57157 6.78514 7.05726 7.23665 7.27366 7.47709 7.67021 8.19282 8.44790 8.83705 8.93785 9.48951 11.01941 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031627 B = 0.003399 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.116974 B = 8234.726012 C = 8679.875866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.109 0.891 4 C 0.104 3.896 5 N -0.644 5.644 6 C 0.725 3.275 7 O -0.588 6.588 8 N -0.738 5.738 9 C 0.148 3.852 10 C -0.021 4.021 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.143 3.857 20 C -0.066 4.066 21 C -0.138 4.138 22 C 0.496 3.504 23 O -0.511 6.511 24 O -0.509 6.509 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.391 0.609 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 17.953 -19.076 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.127 0.873 4 C -0.020 4.020 5 N -0.383 5.383 6 C 0.427 3.573 7 O -0.466 6.466 8 N -0.392 5.392 9 C 0.026 3.974 10 C -0.059 4.059 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C 0.019 3.981 20 C -0.069 4.069 21 C -0.195 4.195 22 C 0.337 3.663 23 O -0.398 6.398 24 O -0.321 6.321 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.225 0.775 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.320 16.956 -18.895 25.753 hybrid contribution 0.074 1.708 0.473 1.774 sum 4.394 18.664 -18.422 26.590 Atomic orbital electron populations 1.21952 0.93310 1.02719 1.02300 1.22304 0.97229 1.00463 0.91623 0.87318 1.22502 1.00925 0.82045 0.96532 1.47971 1.68514 1.04454 1.17381 1.15408 0.78480 0.81891 0.81481 1.90922 1.59428 1.29196 1.67053 1.45537 1.67402 1.11213 1.15060 1.21410 1.00353 0.82334 0.93328 1.19793 0.95764 0.98778 0.91558 1.20912 1.42590 0.92159 1.00382 0.90556 1.24998 0.94922 0.96280 0.97082 1.69906 1.44274 1.25482 1.14016 0.86751 0.79091 0.84443 0.78776 1.20231 1.21278 1.19104 1.21972 0.95681 0.96991 0.83466 1.21484 0.95364 0.95258 0.94751 1.21955 0.96277 1.01659 0.99574 1.23113 0.77557 0.86757 0.78835 1.90704 1.59955 1.19365 1.69803 1.84553 1.60876 1.48589 1.38056 0.91684 0.91860 0.92002 0.89823 0.90798 0.77536 0.92058 0.92042 0.96046 0.96478 0.92547 0.88316 0.91190 0.91123 0.90115 0.91581 0.73042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 7.93 37.16 0.29 -0.83 16 2 C -0.10 -0.83 3.26 -89.09 -0.29 -1.12 16 3 H 0.11 0.97 6.47 -51.93 -0.34 0.63 16 4 C 0.10 0.99 6.47 -2.28 -0.01 0.98 16 5 N -0.64 -8.16 3.32 -174.86 -0.58 -8.74 16 6 C 0.73 12.36 8.57 -86.92 -0.74 11.61 16 7 O -0.59 -12.37 16.61 5.29 0.09 -12.28 16 8 N -0.74 -12.43 5.53 -65.23 -0.36 -12.79 16 9 C 0.15 3.04 5.61 -4.05 -0.02 3.02 16 10 C -0.02 -0.48 4.16 -27.89 -0.12 -0.60 16 11 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 12 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 15 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 19 C 0.14 1.54 6.13 -2.40 -0.01 1.52 16 20 C -0.07 -0.58 0.97 -154.26 -0.15 -0.73 16 21 C -0.14 -1.08 7.19 37.16 0.27 -0.81 16 22 C 0.50 4.34 6.84 36.00 0.25 4.59 16 23 O -0.51 -5.68 16.02 -18.76 -0.30 -5.98 16 24 O -0.51 -3.29 13.34 -39.24 -0.52 -3.81 16 25 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.43 6.84 -51.93 -0.36 0.07 16 28 H 0.08 0.74 6.59 -51.93 -0.34 0.40 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.39 5.56 6.87 -40.82 -0.28 5.28 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 34 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 36 H 0.10 1.15 7.60 -51.93 -0.39 0.75 16 37 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 38 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 39 H 0.08 0.71 6.71 -51.93 -0.35 0.37 16 40 H 0.07 0.44 6.89 -51.93 -0.36 0.09 16 41 H 0.41 0.91 9.10 45.56 0.41 1.33 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -34.76 332.69 -6.76 -41.52 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.22 Total: 2.72 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -0.97 Total: 4.61 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.17 Total: -48.05 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.74 Total: -22.07 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.76 -6.76 -41.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599920857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.071 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds