Wall clock time and date at job start Tue Mar 31 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.38818 * 2 1 4 4 C 1.54629 * 110.42339 * 122.32842 * 2 1 3 5 5 N 1.48145 * 104.61800 * 94.89321 * 4 2 1 6 6 C 1.34772 * 127.84059 * 219.62260 * 5 4 2 7 7 O 1.21585 * 120.00374 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00214 * 0.02810 * 6 5 4 9 9 C 1.46494 * 120.00329 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47071 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47211 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00088 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99685 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99857 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47014 * 90.00174 * 15 13 11 17 17 H 1.48506 * 109.46924 * 209.99954 * 15 13 11 18 18 H 1.48496 * 109.47525 * 329.99794 * 15 13 11 19 19 C 1.48147 * 104.32335 * 39.64646 * 5 4 2 20 20 C 1.54282 * 110.34064 * 237.77295 * 2 1 3 21 21 C 1.52998 * 110.34553 * 0.10093 * 20 2 1 22 22 C 1.50696 * 110.34682 * 122.26199 * 20 2 1 23 23 O 1.20833 * 119.99655 * 358.51796 * 22 20 2 24 24 O 1.34222 * 120.00432 * 178.80064 * 22 20 2 25 25 H 1.08994 * 109.47632 * 182.23071 * 1 2 3 26 26 H 1.09006 * 109.47124 * 302.23055 * 1 2 3 27 27 H 1.09004 * 109.47369 * 62.22464 * 1 2 3 28 28 H 1.08999 * 110.35462 * 336.14037 * 4 2 1 29 29 H 1.08998 * 110.55889 * 213.75269 * 4 2 1 30 30 H 0.97004 * 119.99089 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47344 * 300.00305 * 9 8 6 32 32 H 1.09006 * 109.47006 * 60.00548 * 9 8 6 33 33 H 1.09004 * 109.47164 * 299.99876 * 10 9 8 34 34 H 1.08997 * 109.47069 * 60.00249 * 10 9 8 35 35 H 0.97006 * 119.99687 * 180.02562 * 14 13 11 36 36 H 1.09002 * 110.41015 * 201.62681 * 19 5 4 37 37 H 1.09005 * 110.50845 * 79.24575 * 19 5 4 38 38 H 1.09004 * 109.47506 * 181.47508 * 21 20 2 39 39 H 1.09000 * 109.47253 * 301.48093 * 21 20 2 40 40 H 1.09004 * 109.46434 * 61.47708 * 21 20 2 41 41 H 0.96701 * 117.00458 * 179.72178 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0696 -0.7749 1.2245 5 7 2.3146 -2.1464 0.7207 6 6 2.0779 -3.3135 1.3516 7 8 2.3357 -4.3660 0.8001 8 7 1.5552 -3.3142 2.5940 9 6 1.2974 -4.5829 3.2795 10 6 0.7077 -4.3040 4.6635 11 6 0.4430 -5.6091 5.3690 12 1 0.6728 -6.5439 4.8795 13 6 -0.0915 -5.6096 6.6400 14 7 -0.3220 -6.7486 7.2558 15 14 -0.4883 -3.9927 7.4870 16 1 -1.8837 -3.5967 7.1688 17 1 -0.3425 -4.1547 8.9560 18 1 0.4457 -2.9416 7.0098 19 6 2.8795 -1.9438 -0.6338 20 6 2.0663 -0.7714 -1.2237 21 6 0.9061 -1.3012 -2.0689 22 6 2.9556 0.1171 -2.0547 23 8 3.1317 1.2679 -1.7312 24 8 3.5475 -0.3682 -3.1573 25 1 -0.3634 -1.0268 0.0400 26 1 -0.3634 0.5481 0.8694 27 1 -0.3634 0.4789 -0.9093 28 1 1.3260 -0.7900 2.0213 29 1 2.9983 -0.3293 1.5806 30 1 1.3498 -2.4745 3.0340 31 1 0.5912 -5.1740 2.6965 32 1 2.2315 -5.1344 3.3866 33 1 1.4136 -3.7127 5.2468 34 1 -0.2264 -3.7527 4.5561 35 1 -0.6985 -6.7490 8.1499 36 1 2.7471 -2.8407 -1.2389 37 1 3.9355 -1.6806 -0.5717 38 1 1.3002 -1.8654 -2.9142 39 1 0.2793 -1.9514 -1.4586 40 1 0.3122 -0.4641 -2.4359 41 1 4.1055 0.2407 -3.6602 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599920857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:43 Heat of formation + Delta-G solvation = -146.396517 kcal Electronic energy + Delta-G solvation = -22966.145826 eV Core-core repulsion = 19458.985814 eV Total energy + Delta-G solvation = -3507.160012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.20240 -40.89464 -39.11400 -37.14453 -36.62344 -34.91402 -34.38285 -32.29780 -31.80331 -28.59408 -27.02580 -26.52121 -25.10286 -23.27017 -22.64753 -21.19006 -20.06050 -19.25717 -18.97129 -18.93170 -18.00177 -17.01717 -16.72989 -16.69315 -16.22615 -15.80598 -15.46380 -15.10439 -14.88012 -14.73928 -14.59532 -14.51315 -14.05740 -13.49311 -13.38692 -13.35966 -13.00768 -12.94014 -12.64136 -12.48307 -12.17790 -12.15683 -12.07647 -11.76508 -11.74930 -11.72042 -11.51463 -11.49564 -11.22018 -10.77410 -10.26206 -9.62210 -8.28540 -6.35781 1.05847 1.40397 1.43243 1.46956 1.54420 2.01867 2.11041 2.38367 2.98744 3.06621 3.21389 3.36370 3.69111 4.02062 4.11996 4.26042 4.33813 4.42847 4.45808 4.52063 4.60160 4.60675 4.69640 4.76285 4.77634 4.81574 4.98071 5.08146 5.13065 5.15897 5.26903 5.42168 5.44191 5.45059 5.56839 5.66842 5.99792 6.24568 6.71512 6.94278 6.96070 7.28648 7.52145 8.88323 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031627 B = 0.003399 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.116974 B = 8234.726012 C = 8679.875866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.112 0.888 4 C 0.098 3.902 5 N -0.638 5.638 6 C 0.724 3.276 7 O -0.635 6.635 8 N -0.728 5.728 9 C 0.165 3.835 10 C -0.010 4.010 11 C -0.538 4.538 12 H 0.029 0.971 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.959 3.041 16 H -0.264 1.264 17 H -0.288 1.288 18 H -0.236 1.236 19 C 0.140 3.860 20 C -0.062 4.062 21 C -0.135 4.135 22 C 0.504 3.496 23 O -0.534 6.534 24 O -0.506 6.506 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.407 0.593 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.268 0.732 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 21.586 -19.511 29.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.130 0.870 4 C -0.024 4.024 5 N -0.376 5.376 6 C 0.426 3.574 7 O -0.517 6.517 8 N -0.384 5.384 9 C 0.041 3.959 10 C -0.048 4.048 11 C -0.577 4.577 12 H 0.048 0.952 13 C -0.193 4.193 14 N -0.591 5.591 15 Si 0.781 3.219 16 H -0.189 1.189 17 H -0.214 1.214 18 H -0.159 1.159 19 C 0.016 3.984 20 C -0.064 4.064 21 C -0.192 4.192 22 C 0.347 3.653 23 O -0.424 6.424 24 O -0.319 6.319 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.244 0.756 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 4.198 20.662 -19.386 28.641 hybrid contribution 0.184 0.505 0.486 0.725 sum 4.382 21.167 -18.899 28.713 Atomic orbital electron populations 1.21943 0.92560 1.02223 1.03331 1.22268 0.97763 1.00154 0.90763 0.87026 1.22785 1.02130 0.80051 0.97408 1.47870 1.67282 1.04464 1.17963 1.15461 0.78215 0.82449 0.81290 1.90890 1.61262 1.31439 1.68070 1.45128 1.67597 1.10509 1.15150 1.20905 0.98754 0.83673 0.92573 1.19633 0.96976 0.96251 0.91969 1.21244 1.42540 0.92891 1.00997 0.95246 1.26080 0.94542 1.00831 0.97857 1.70080 1.45713 1.28643 1.14699 0.85538 0.79913 0.79376 0.77043 1.18891 1.21359 1.15943 1.22103 0.96508 0.97399 0.82411 1.21422 0.95410 0.94477 0.95132 1.21936 0.95931 1.01996 0.99314 1.22935 0.77194 0.86133 0.79054 1.90704 1.60833 1.20275 1.70573 1.84513 1.60863 1.49137 1.37431 0.92867 0.90865 0.91053 0.88667 0.89445 0.75601 0.93846 0.94028 0.94568 0.94540 0.92338 0.89608 0.90308 0.90863 0.91238 0.90131 0.70747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.93 71.98 0.57 -1.26 16 2 C -0.09 -1.30 3.26 -9.81 -0.03 -1.33 16 3 H 0.11 1.65 6.47 -2.38 -0.02 1.64 16 4 C 0.10 1.62 6.47 86.62 0.56 2.18 16 5 N -0.64 -15.26 3.32 -825.40 -2.74 -18.00 16 6 C 0.72 24.27 8.57 179.05 1.53 25.80 16 7 O -0.64 -27.21 16.61 -3.98 -0.07 -27.27 16 8 N -0.73 -23.62 5.53 -478.55 -2.65 -26.27 16 9 C 0.17 6.82 5.61 86.38 0.48 7.30 16 10 C -0.01 -0.46 4.16 29.85 0.12 -0.34 16 11 C -0.54 -30.66 9.66 25.60 0.25 -30.41 16 12 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 13 C 0.00 0.22 5.47 84.66 0.46 0.69 16 14 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 15 Si 0.96 41.95 27.47 68.60 1.88 43.84 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 19 C 0.14 2.82 6.13 86.54 0.53 3.35 16 20 C -0.06 -0.96 0.97 -52.02 -0.05 -1.01 16 21 C -0.13 -1.87 7.19 71.98 0.52 -1.36 16 22 C 0.50 7.66 6.84 71.23 0.49 8.15 16 23 O -0.53 -10.62 16.02 21.94 0.35 -10.27 16 24 O -0.51 -5.33 13.34 -51.34 -0.68 -6.02 16 25 H 0.05 0.82 6.76 -2.39 -0.02 0.81 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.78 6.84 -2.39 -0.02 0.76 16 28 H 0.10 1.36 6.59 -2.39 -0.02 1.34 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.41 10.45 6.87 -92.71 -0.64 9.82 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.04 1.51 7.20 -2.38 -0.02 1.49 16 34 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 35 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 36 H 0.09 1.97 7.60 -2.39 -0.02 1.96 16 37 H 0.08 1.46 7.85 -2.38 -0.02 1.44 16 38 H 0.07 0.98 8.13 -2.38 -0.02 0.96 16 39 H 0.07 1.15 6.71 -2.39 -0.02 1.13 16 40 H 0.08 0.89 6.89 -2.38 -0.02 0.87 16 41 H 0.43 0.81 9.10 -74.06 -0.67 0.13 16 Total: -1.00 -77.21 332.69 1.53 -75.68 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.31 Total: 15.52 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: 5.44 Total: 11.76 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -5.09 Total: -103.24 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -0.40 Total: -43.56 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.88 Total: 43.84 kcal Total: -77.21 1.53 -75.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599920857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.719 kcal (2) G-P(sol) polarization free energy of solvation -77.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds