Wall clock time and date at job start Tue Mar 31 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48505 * 109.47169 * 240.00437 * 3 2 1 5 5 H 1.48506 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47253 * 120.00483 * 3 2 1 7 7 C 1.37877 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46827 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46764 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46599 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99366 * 180.02562 * 12 11 10 14 14 O 1.21584 * 120.00065 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99745 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99926 * 180.02562 * 15 13 12 17 17 C 1.53783 * 113.61369 * 204.99969 * 16 15 13 18 18 C 1.53781 * 87.08084 * 219.93718 * 17 16 15 19 19 C 1.52996 * 113.61502 * 139.98224 * 18 17 16 20 20 C 1.50706 * 109.47215 * 176.52782 * 19 18 17 21 21 O 1.20825 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00295 * 180.02562 * 20 19 18 23 23 C 1.53776 * 87.17326 * 25.39111 * 18 17 16 24 24 H 0.96998 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47055 * 59.99826 * 9 7 2 26 26 H 1.09003 * 109.47001 * 299.99961 * 9 7 2 27 27 H 1.09005 * 109.47093 * 59.99963 * 10 9 7 28 28 H 1.08990 * 109.47397 * 299.99590 * 10 9 7 29 29 H 1.08997 * 109.46756 * 60.00140 * 11 10 9 30 30 H 1.08997 * 109.47401 * 299.99823 * 11 10 9 31 31 H 0.96996 * 120.00721 * 0.02562 * 12 11 10 32 32 H 0.97003 * 119.99627 * 0.02562 * 15 13 12 33 33 H 1.08993 * 112.84964 * 336.19428 * 16 15 13 34 34 H 1.08993 * 113.61633 * 105.38438 * 17 16 15 35 35 H 1.09004 * 113.61285 * 334.48092 * 17 16 15 36 36 H 1.09007 * 113.61014 * 270.79905 * 18 17 16 37 37 H 1.08997 * 109.47192 * 56.52868 * 19 18 17 38 38 H 1.09000 * 109.47459 * 296.52948 * 19 18 17 39 39 H 0.96700 * 117.00196 * 179.97438 * 22 20 19 40 40 H 1.08998 * 113.62069 * 89.16241 * 23 18 17 41 41 H 1.09002 * 113.61359 * 220.06279 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0030 13 6 1.9831 -7.3713 -0.0034 14 8 0.7877 -7.5934 -0.0026 15 7 2.8589 -8.3957 -0.0045 16 6 2.3706 -9.7769 -0.0055 17 6 3.3695 -10.7838 0.5888 18 6 2.9483 -11.7453 -0.5350 19 6 4.1137 -12.5337 -1.1360 20 6 3.5878 -13.5032 -2.1629 21 8 2.4024 -13.5583 -2.3905 22 8 4.4360 -14.3063 -2.8241 23 6 2.5609 -10.5007 -1.3509 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0446 -0.8905 30 1 0.8547 -5.0450 0.8895 31 1 3.3860 -5.9234 -0.0040 32 1 3.8126 -8.2184 -0.0048 33 1 1.3633 -9.8699 0.4003 34 1 3.0982 -11.1316 1.5855 35 1 4.4083 -10.4606 0.5203 36 1 2.0997 -12.3776 -0.2735 37 1 4.6260 -13.0833 -0.3464 38 1 4.8120 -11.8446 -1.6109 39 1 4.0519 -14.9116 -3.4730 40 1 3.3780 -10.0999 -1.9506 41 1 1.6376 -10.6203 -1.9178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:35 Heat of formation + Delta-G solvation = -126.169196 kcal Electronic energy + Delta-G solvation = -21221.676836 eV Core-core repulsion = 17715.393946 eV Total energy + Delta-G solvation = -3506.282890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91382 -40.06026 -38.67658 -36.51217 -35.35830 -33.78899 -33.19067 -31.26022 -30.34936 -26.68744 -26.04905 -24.36560 -22.97071 -21.49854 -20.77904 -20.42027 -19.88916 -18.46354 -17.93582 -17.15076 -16.54856 -16.44566 -16.09337 -15.50048 -15.32421 -14.71713 -14.38710 -14.17559 -13.91978 -13.65242 -13.47697 -12.86980 -12.66209 -12.27182 -12.24100 -11.93431 -11.80602 -11.68643 -11.40742 -11.21276 -10.88328 -10.85459 -10.70252 -10.67296 -10.60633 -10.06042 -9.84009 -9.42093 -9.13702 -9.12276 -8.58253 -8.35728 -6.00407 -4.03606 1.79803 2.57702 2.87244 3.32603 3.36173 3.37420 3.39245 4.08876 4.11997 4.27882 4.44051 4.49894 4.55925 4.70331 4.90493 5.01930 5.08057 5.32226 5.35089 5.41733 5.50238 5.70154 5.73435 5.80732 5.83852 6.02017 6.09277 6.20938 6.51573 6.55902 6.64428 6.83314 7.04201 7.11032 7.46549 7.65093 7.78399 7.98451 8.18002 8.39291 8.78534 9.02875 9.60305 11.10802 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.046991 B = 0.002018 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.718016 B =13874.806477 C =13993.153019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.699 3.301 14 O -0.593 6.593 15 N -0.741 5.741 16 C 0.146 3.854 17 C -0.140 4.140 18 C -0.101 4.101 19 C -0.101 4.101 20 C 0.476 3.524 21 O -0.510 6.510 22 O -0.522 6.522 23 C -0.149 4.149 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.410 0.590 40 H 0.083 0.917 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.508 -27.863 -1.514 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.396 5.396 13 C 0.399 3.601 14 O -0.471 6.471 15 N -0.395 5.395 16 C 0.039 3.961 17 C -0.179 4.179 18 C -0.120 4.120 19 C -0.139 4.139 20 C 0.318 3.682 21 O -0.398 6.398 22 O -0.334 6.334 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.226 0.774 32 H 0.228 0.772 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.037 -27.640 -1.277 29.790 hybrid contribution 1.135 0.691 -0.528 1.430 sum 12.172 -26.949 -1.805 29.626 Atomic orbital electron populations 1.69958 1.06042 1.26782 1.50448 1.25036 0.94871 0.99291 0.95310 0.86638 0.79545 0.83112 0.78549 1.20268 1.21279 1.20275 1.21167 0.92935 0.90966 1.51051 0.92718 1.19028 0.93868 0.90798 0.97706 1.21888 0.99776 0.93364 1.00780 1.21509 0.91311 0.84165 1.01878 1.45402 1.10403 1.04517 1.79297 1.16091 0.85418 0.80840 0.77760 1.90917 1.14188 1.84089 1.57867 1.45113 1.08671 1.04955 1.80794 1.22255 0.99241 0.78449 0.96119 1.23440 1.00048 0.95703 0.98659 1.22257 0.97553 0.95159 0.97024 1.21384 0.99863 0.96435 0.96214 1.23595 0.84566 0.79438 0.80593 1.90753 1.17919 1.67118 1.63990 1.84537 1.44545 1.50688 1.53630 1.23629 1.02769 0.94807 0.97599 0.92875 0.96240 0.96229 0.92794 0.92796 0.91983 0.91965 0.77370 0.77205 0.86565 0.90236 0.89282 0.87618 0.87353 0.87439 0.73128 0.89805 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -10.75 5.56 -65.22 -0.36 -11.11 16 13 C 0.70 10.67 8.57 -86.91 -0.74 9.92 16 14 O -0.59 -11.78 15.94 5.29 0.08 -11.70 16 15 N -0.74 -7.66 5.37 -57.79 -0.31 -7.97 16 16 C 0.15 1.36 4.24 -67.03 -0.28 1.08 16 17 C -0.14 -0.79 7.40 -25.92 -0.19 -0.98 16 18 C -0.10 -0.64 3.11 -89.81 -0.28 -0.92 16 19 C -0.10 -0.47 5.64 -27.88 -0.16 -0.63 16 20 C 0.48 3.36 8.33 36.01 0.30 3.66 16 21 O -0.51 -5.49 16.55 -18.75 -0.31 -5.80 16 22 O -0.52 -2.67 13.42 -39.24 -0.53 -3.20 16 23 C -0.15 -1.26 7.45 -25.83 -0.19 -1.46 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.39 4.44 8.49 -40.82 -0.35 4.10 16 32 H 0.39 2.81 8.74 -40.82 -0.36 2.45 16 33 H 0.12 1.36 7.46 -51.93 -0.39 0.97 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.11 0.79 7.73 -51.93 -0.40 0.39 16 37 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.11 0.36 7.88 -51.93 -0.41 -0.05 16 39 H 0.41 0.62 9.10 45.56 0.41 1.03 16 40 H 0.08 0.64 7.92 -51.93 -0.41 0.22 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -36.51 350.91 -8.35 -44.86 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.66 Total: 1.71 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.26 Total: -2.40 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.06 Total: -45.26 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.75 Total: -20.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.51 -8.35 -44.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.311 kcal (2) G-P(sol) polarization free energy of solvation -36.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds