Wall clock time and date at job start Tue Mar 31 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48505 * 109.47169 * 240.00437 * 3 2 1 5 5 H 1.48506 * 109.47314 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47253 * 120.00483 * 3 2 1 7 7 C 1.37877 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46827 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46764 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46599 * 179.97438 * 11 10 9 13 13 C 1.34782 * 119.99366 * 180.02562 * 12 11 10 14 14 O 1.21584 * 120.00065 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99745 * 180.02562 * 13 12 11 16 16 C 1.46497 * 119.99926 * 180.02562 * 15 13 12 17 17 C 1.53783 * 113.61369 * 204.99969 * 16 15 13 18 18 C 1.53781 * 87.08084 * 219.93718 * 17 16 15 19 19 C 1.52996 * 113.61502 * 139.98224 * 18 17 16 20 20 C 1.50706 * 109.47215 * 176.52782 * 19 18 17 21 21 O 1.20825 * 119.99859 * 359.97438 * 20 19 18 22 22 O 1.34224 * 120.00295 * 180.02562 * 20 19 18 23 23 C 1.53776 * 87.17326 * 25.39111 * 18 17 16 24 24 H 0.96998 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47055 * 59.99826 * 9 7 2 26 26 H 1.09003 * 109.47001 * 299.99961 * 9 7 2 27 27 H 1.09005 * 109.47093 * 59.99963 * 10 9 7 28 28 H 1.08990 * 109.47397 * 299.99590 * 10 9 7 29 29 H 1.08997 * 109.46756 * 60.00140 * 11 10 9 30 30 H 1.08997 * 109.47401 * 299.99823 * 11 10 9 31 31 H 0.96996 * 120.00721 * 0.02562 * 12 11 10 32 32 H 0.97003 * 119.99627 * 0.02562 * 15 13 12 33 33 H 1.08993 * 112.84964 * 336.19428 * 16 15 13 34 34 H 1.08993 * 113.61633 * 105.38438 * 17 16 15 35 35 H 1.09004 * 113.61285 * 334.48092 * 17 16 15 36 36 H 1.09007 * 113.61014 * 270.79905 * 18 17 16 37 37 H 1.08997 * 109.47192 * 56.52868 * 19 18 17 38 38 H 1.09000 * 109.47459 * 296.52948 * 19 18 17 39 39 H 0.96700 * 117.00196 * 179.97438 * 22 20 19 40 40 H 1.08998 * 113.62069 * 89.16241 * 23 18 17 41 41 H 1.09002 * 113.61359 * 220.06279 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0030 13 6 1.9831 -7.3713 -0.0034 14 8 0.7877 -7.5934 -0.0026 15 7 2.8589 -8.3957 -0.0045 16 6 2.3706 -9.7769 -0.0055 17 6 3.3695 -10.7838 0.5888 18 6 2.9483 -11.7453 -0.5350 19 6 4.1137 -12.5337 -1.1360 20 6 3.5878 -13.5032 -2.1629 21 8 2.4024 -13.5583 -2.3905 22 8 4.4360 -14.3063 -2.8241 23 6 2.5609 -10.5007 -1.3509 24 1 -0.4849 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8727 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8922 29 1 0.8527 -5.0446 -0.8905 30 1 0.8547 -5.0450 0.8895 31 1 3.3860 -5.9234 -0.0040 32 1 3.8126 -8.2184 -0.0048 33 1 1.3633 -9.8699 0.4003 34 1 3.0982 -11.1316 1.5855 35 1 4.4083 -10.4606 0.5203 36 1 2.0997 -12.3776 -0.2735 37 1 4.6260 -13.0833 -0.3464 38 1 4.8120 -11.8446 -1.6109 39 1 4.0519 -14.9116 -3.4730 40 1 3.3780 -10.0999 -1.9506 41 1 1.6376 -10.6203 -1.9178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065320.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:34 Heat of formation + Delta-G solvation = -154.046876 kcal Electronic energy + Delta-G solvation = -21222.885703 eV Core-core repulsion = 17715.393946 eV Total energy + Delta-G solvation = -3507.491756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.55690 -40.98967 -39.52161 -37.06797 -36.89412 -35.19255 -34.69884 -32.86544 -31.10228 -28.48282 -26.62801 -25.47851 -24.38369 -22.32306 -22.26111 -21.60732 -20.57579 -19.17821 -18.87067 -18.50606 -17.74415 -17.18519 -16.96064 -16.76572 -16.49879 -16.09673 -15.68212 -15.56473 -15.19420 -14.25964 -14.24272 -14.14816 -13.73853 -13.53899 -13.36401 -13.22262 -12.81414 -12.68598 -12.53669 -12.47980 -12.38953 -12.06312 -11.81348 -11.64852 -11.61030 -11.46005 -11.29770 -11.26285 -11.09670 -10.53578 -10.30715 -9.70132 -8.17982 -6.29731 1.29691 1.42529 1.45892 1.53668 1.74864 2.14954 2.24757 2.43218 3.15495 3.37029 3.52773 3.61455 3.84622 3.92911 4.16982 4.19745 4.25017 4.45237 4.57694 4.67559 4.69190 4.80914 4.84437 4.93692 4.97361 5.02375 5.11480 5.16451 5.18571 5.36756 5.48629 5.56270 5.67571 5.71823 5.72477 5.85541 6.08326 6.23828 6.87546 7.04976 7.17763 7.39720 7.62766 8.93919 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.046991 B = 0.002018 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.718016 B =13874.806477 C =13993.153019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.149 3.851 12 N -0.729 5.729 13 C 0.694 3.306 14 O -0.645 6.645 15 N -0.717 5.717 16 C 0.128 3.872 17 C -0.114 4.114 18 C -0.094 4.094 19 C -0.097 4.097 20 C 0.476 3.524 21 O -0.559 6.559 22 O -0.518 6.518 23 C -0.150 4.150 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.413 0.587 32 H 0.415 0.585 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.424 0.576 40 H 0.100 0.900 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.516 -28.396 -1.171 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.137 4.137 11 C 0.024 3.976 12 N -0.385 5.385 13 C 0.394 3.606 14 O -0.527 6.527 15 N -0.372 5.372 16 C 0.022 3.978 17 C -0.152 4.152 18 C -0.113 4.113 19 C -0.134 4.134 20 C 0.321 3.679 21 O -0.450 6.450 22 O -0.331 6.331 23 C -0.189 4.189 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.250 0.750 32 H 0.253 0.747 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.285 0.715 40 H 0.118 0.882 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.154 -28.224 -0.941 32.049 hybrid contribution -0.136 0.763 -0.680 1.031 sum 15.017 -27.462 -1.621 31.342 Atomic orbital electron populations 1.70115 1.07984 1.27832 1.51640 1.26060 0.95772 1.03658 0.94822 0.85444 0.78144 0.77808 0.79285 1.18988 1.21274 1.18953 1.21657 0.93789 0.91937 1.50501 0.91378 1.18954 0.94505 0.93062 0.95031 1.21580 0.98384 0.91545 1.02197 1.21056 0.91432 0.84834 1.00252 1.45016 1.10815 1.03522 1.79167 1.16314 0.85229 0.81583 0.77492 1.90890 1.16831 1.84858 1.60159 1.44922 1.09096 1.04161 1.79038 1.22424 0.99305 0.78436 0.97652 1.23360 1.00411 0.92938 0.98489 1.22111 0.97960 0.94447 0.96769 1.21468 0.99135 0.96337 0.96417 1.24123 0.83968 0.79343 0.80459 1.90750 1.19964 1.68653 1.65610 1.84509 1.44151 1.50652 1.53804 1.23652 1.01919 0.96282 0.97094 0.92853 0.99085 0.98989 0.91184 0.91288 0.93864 0.93678 0.75041 0.74731 0.89851 0.89385 0.86071 0.89429 0.84405 0.85127 0.71484 0.88176 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.17 4.97 29.85 0.15 1.31 16 10 C -0.10 -3.82 5.27 30.60 0.16 -3.66 16 11 C 0.15 5.44 5.67 86.38 0.49 5.93 16 12 N -0.73 -20.31 5.56 -478.52 -2.66 -22.98 16 13 C 0.69 20.96 8.57 179.05 1.53 22.50 16 14 O -0.65 -26.66 15.94 -3.98 -0.06 -26.72 16 15 N -0.72 -13.61 5.37 -455.02 -2.44 -16.05 16 16 C 0.13 2.29 4.24 45.58 0.19 2.49 16 17 C -0.11 -0.94 7.40 31.12 0.23 -0.71 16 18 C -0.09 -1.03 3.11 -10.27 -0.03 -1.06 16 19 C -0.10 -0.58 5.64 29.85 0.17 -0.41 16 20 C 0.48 5.98 8.33 71.24 0.59 6.58 16 21 O -0.56 -12.11 16.55 21.97 0.36 -11.75 16 22 O -0.52 -4.23 13.42 -51.35 -0.69 -4.92 16 23 C -0.15 -2.47 7.45 31.18 0.23 -2.24 16 24 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 27 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.41 8.20 8.49 -92.71 -0.79 7.41 16 32 H 0.42 4.45 8.74 -92.71 -0.81 3.64 16 33 H 0.08 2.08 7.46 -2.39 -0.02 2.07 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.30 8.08 -2.38 -0.02 0.28 16 36 H 0.09 1.31 7.73 -2.38 -0.02 1.29 16 37 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.13 0.26 7.88 -2.39 -0.02 0.25 16 39 H 0.42 0.67 9.10 -74.06 -0.67 0.00 16 40 H 0.10 1.30 7.92 -2.39 -0.02 1.28 16 41 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -83.27 350.91 0.02 -83.25 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -1.21 Total: 9.77 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 4.41 Total: 0.87 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -4.82 Total: -96.33 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.39 Total: -43.39 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -83.27 0.02 -83.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065320.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.794 kcal (2) G-P(sol) polarization free energy of solvation -83.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds