Wall clock time and date at job start Tue Mar 31 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47448 * 270.00549 * 3 2 1 5 5 H 1.48502 * 109.46922 * 30.00735 * 3 2 1 6 6 H 1.48499 * 109.47146 * 150.00061 * 3 2 1 7 7 C 1.37868 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99829 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00554 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47657 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00307 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00390 * 180.27244 * 11 10 9 14 14 C 1.46498 * 120.00328 * 179.72097 * 13 11 10 15 15 C 1.53001 * 109.46812 * 174.77392 * 14 13 11 16 16 C 1.52998 * 110.01919 * 304.44150 * 15 14 13 17 17 C 1.50701 * 109.47251 * 300.50747 * 16 15 14 18 18 O 1.20827 * 119.99703 * 354.17960 * 17 16 15 19 19 O 1.34230 * 120.00258 * 174.17515 * 17 16 15 20 20 C 1.54273 * 110.02924 * 183.05219 * 15 14 13 21 21 C 1.54964 * 104.15813 * 217.13503 * 20 15 14 22 22 C 1.54883 * 102.77738 * 37.88858 * 21 20 15 23 23 C 1.53874 * 110.03472 * 65.83818 * 15 14 13 24 24 H 0.97003 * 120.00189 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47452 * 59.99662 * 9 7 2 26 26 H 1.09006 * 109.47137 * 299.99684 * 9 7 2 27 27 H 0.97006 * 119.99720 * 359.97438 * 10 9 7 28 28 H 0.97005 * 119.99547 * 359.72908 * 13 11 10 29 29 H 1.08999 * 109.47196 * 294.77333 * 14 13 11 30 30 H 1.08997 * 109.46974 * 54.77175 * 14 13 11 31 31 H 1.09007 * 109.46789 * 60.50421 * 16 15 14 32 32 H 1.08997 * 109.47546 * 180.50611 * 16 15 14 33 33 H 0.96702 * 116.99993 * 179.97438 * 19 17 16 34 34 H 1.08999 * 110.48699 * 335.78532 * 20 15 14 35 35 H 1.09006 * 110.48332 * 98.42747 * 20 15 14 36 36 H 1.09004 * 110.71770 * 279.57366 * 21 20 15 37 37 H 1.08998 * 110.92057 * 156.30112 * 21 20 15 38 38 H 1.09002 * 110.48457 * 203.40166 * 22 21 20 39 39 H 1.09002 * 110.48688 * 80.76239 * 22 21 20 40 40 H 1.09004 * 110.02684 * 238.56818 * 23 15 14 41 41 H 1.08998 * 110.03198 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3249 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0014 13 7 5.7743 -4.0920 -0.0064 14 6 7.2146 -4.3597 -0.0125 15 6 7.4540 -5.8656 0.1135 16 6 6.7572 -6.4038 1.3648 17 6 7.2996 -5.7018 2.5831 18 8 8.2272 -4.9351 2.4755 19 8 6.7521 -5.9282 3.7875 20 6 8.9675 -6.1558 0.1854 21 6 9.1397 -7.4708 -0.6161 22 6 8.1360 -7.2950 -1.7825 23 6 6.9254 -6.5898 -1.1369 24 1 -0.4850 0.8401 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.3696 -3.3125 -0.0002 28 1 5.1440 -4.8294 -0.0064 29 1 7.6471 -3.9999 -0.9461 30 1 7.6832 -3.8457 0.8268 31 1 5.6847 -6.2239 1.2892 32 1 6.9408 -7.4747 1.4508 33 1 7.1343 -5.4551 4.5394 34 1 9.5332 -5.3487 -0.2800 35 1 9.2805 -6.2950 1.2202 36 1 8.8739 -8.3329 -0.0043 37 1 10.1578 -7.5661 -0.9935 38 1 7.8431 -8.2655 -2.1833 39 1 8.5671 -6.6720 -2.5662 40 1 6.1730 -7.3253 -0.8522 41 1 6.4979 -5.8686 -1.8334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:41 Heat of formation + Delta-G solvation = -138.397562 kcal Electronic energy + Delta-G solvation = -23070.164689 eV Core-core repulsion = 19563.351537 eV Total energy + Delta-G solvation = -3506.813151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05649 -39.38325 -38.50677 -36.20084 -34.55424 -33.99585 -32.33723 -31.54542 -28.97131 -28.47934 -27.27362 -24.49836 -22.25394 -21.94446 -20.97174 -20.12690 -19.06681 -18.25665 -18.10185 -16.64682 -16.42144 -16.18005 -15.93035 -15.54242 -15.09404 -14.79228 -14.33698 -13.92436 -13.66522 -13.38767 -13.25530 -13.01633 -12.87980 -12.40701 -12.29533 -12.03100 -11.67732 -11.49478 -11.34872 -11.12868 -11.05886 -10.92103 -10.79568 -10.73889 -10.67337 -10.38793 -9.93418 -9.54063 -9.41947 -8.78401 -8.69731 -7.95812 -6.18389 -4.19998 2.06850 2.85838 3.28725 3.32336 3.39014 3.46732 3.87870 4.19064 4.27118 4.35011 4.37228 4.77726 4.87120 4.95000 5.05174 5.11024 5.17462 5.21137 5.26762 5.33539 5.43104 5.53008 5.66299 5.69479 5.84094 5.88223 5.94711 6.09695 6.11168 6.14444 6.45013 6.78452 6.83359 7.15731 7.28662 7.45300 7.61107 7.75099 8.31636 8.72840 8.85462 9.27006 9.44137 10.93582 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.003756 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.432391 B = 7452.801082 C = 7854.293412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.602 6.602 13 N -0.757 5.757 14 C 0.141 3.859 15 C -0.061 4.061 16 C -0.103 4.103 17 C 0.477 3.523 18 O -0.502 6.502 19 O -0.520 6.520 20 C -0.108 4.108 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.120 4.120 24 H 0.267 0.733 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.391 0.609 28 H 0.389 0.611 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.410 0.590 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.812 -19.242 1.597 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.481 6.481 13 N -0.415 5.415 14 C 0.016 3.984 15 C -0.061 4.061 16 C -0.141 4.141 17 C 0.319 3.681 18 O -0.390 6.390 19 O -0.332 6.332 20 C -0.146 4.146 21 C -0.165 4.165 22 C -0.161 4.161 23 C -0.157 4.157 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.224 0.776 28 H 0.222 0.778 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.269 0.731 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.441 -18.202 1.229 24.559 hybrid contribution -0.149 0.537 0.515 0.759 sum 16.292 -17.665 1.744 24.094 Atomic orbital electron populations 1.69880 1.06202 1.27380 1.49685 1.24773 0.94779 0.99152 0.93908 0.86816 0.80620 0.83196 0.79066 1.19851 1.20954 1.18444 1.21096 0.88588 0.95163 1.53070 0.90320 1.19344 0.94760 0.77737 0.96596 1.45386 1.03726 1.10954 1.77574 1.16120 0.83491 0.82756 0.78302 1.90870 1.55399 1.43216 1.58614 1.45212 1.07547 1.06421 1.82288 1.21454 0.80647 0.93063 1.03200 1.21333 0.96582 0.95114 0.93096 1.21525 1.02437 1.01112 0.89000 1.23428 0.80433 0.79721 0.84470 1.90711 1.28036 1.34271 1.85975 1.84525 1.62015 1.68067 1.18591 1.22468 0.93465 0.97441 1.01230 1.22563 0.99323 0.97665 0.96975 1.22344 0.95617 1.00257 0.97842 1.22317 0.98154 0.99436 0.95801 0.92307 0.96006 0.96400 0.77598 0.77762 0.91968 0.89572 0.87681 0.87325 0.73114 0.90732 0.90630 0.91706 0.91491 0.91615 0.91431 0.91180 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 7 C -0.54 -15.08 9.83 -34.45 -0.34 -15.42 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.24 6.07 4.50 -5.19 -0.02 6.05 16 10 N -0.72 -15.24 5.55 -66.41 -0.37 -15.61 16 11 C 0.69 14.14 8.57 -86.93 -0.74 13.40 16 12 O -0.60 -14.95 16.34 5.29 0.09 -14.87 16 13 N -0.76 -11.02 4.93 -65.23 -0.32 -11.34 16 14 C 0.14 1.89 3.85 -4.04 -0.02 1.88 16 15 C -0.06 -0.56 0.36 -153.39 -0.06 -0.61 16 16 C -0.10 -0.84 4.41 -27.88 -0.12 -0.96 16 17 C 0.48 5.07 7.50 36.01 0.27 5.34 16 18 O -0.50 -6.77 12.78 -18.75 -0.24 -7.01 16 19 O -0.52 -4.69 13.42 -39.26 -0.53 -5.21 16 20 C -0.11 -0.97 5.15 -25.03 -0.13 -1.10 16 21 C -0.13 -0.88 6.91 -24.70 -0.17 -1.05 16 22 C -0.12 -0.85 6.83 -25.08 -0.17 -1.02 16 23 C -0.12 -0.91 5.69 -25.62 -0.15 -1.06 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.39 7.14 8.34 -40.82 -0.34 6.80 16 28 H 0.39 4.41 6.98 -40.82 -0.29 4.13 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.42 5.85 -51.93 -0.30 1.11 16 31 H 0.11 0.79 6.77 -51.93 -0.35 0.44 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.41 2.28 9.10 45.56 0.41 2.69 16 34 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16 35 H 0.08 0.74 6.02 -51.93 -0.31 0.42 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.43 7.67 -51.93 -0.40 0.03 16 41 H 0.08 0.68 7.56 -51.93 -0.39 0.29 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -35.72 330.17 -7.29 -43.02 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.26 Total: 7.28 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.74 Total: 7.56 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.08 Total: -52.94 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.68 Total: -27.09 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.72 -7.29 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.381 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds