Wall clock time and date at job start Tue Mar 31 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48496 * 109.47448 * 270.00549 * 3 2 1 5 5 H 1.48502 * 109.46922 * 30.00735 * 3 2 1 6 6 H 1.48499 * 109.47146 * 150.00061 * 3 2 1 7 7 C 1.37868 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99829 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00554 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47657 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00307 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00390 * 180.27244 * 11 10 9 14 14 C 1.46498 * 120.00328 * 179.72097 * 13 11 10 15 15 C 1.53001 * 109.46812 * 174.77392 * 14 13 11 16 16 C 1.52998 * 110.01919 * 304.44150 * 15 14 13 17 17 C 1.50701 * 109.47251 * 300.50747 * 16 15 14 18 18 O 1.20827 * 119.99703 * 354.17960 * 17 16 15 19 19 O 1.34230 * 120.00258 * 174.17515 * 17 16 15 20 20 C 1.54273 * 110.02924 * 183.05219 * 15 14 13 21 21 C 1.54964 * 104.15813 * 217.13503 * 20 15 14 22 22 C 1.54883 * 102.77738 * 37.88858 * 21 20 15 23 23 C 1.53874 * 110.03472 * 65.83818 * 15 14 13 24 24 H 0.97003 * 120.00189 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47452 * 59.99662 * 9 7 2 26 26 H 1.09006 * 109.47137 * 299.99684 * 9 7 2 27 27 H 0.97006 * 119.99720 * 359.97438 * 10 9 7 28 28 H 0.97005 * 119.99547 * 359.72908 * 13 11 10 29 29 H 1.08999 * 109.47196 * 294.77333 * 14 13 11 30 30 H 1.08997 * 109.46974 * 54.77175 * 14 13 11 31 31 H 1.09007 * 109.46789 * 60.50421 * 16 15 14 32 32 H 1.08997 * 109.47546 * 180.50611 * 16 15 14 33 33 H 0.96702 * 116.99993 * 179.97438 * 19 17 16 34 34 H 1.08999 * 110.48699 * 335.78532 * 20 15 14 35 35 H 1.09006 * 110.48332 * 98.42747 * 20 15 14 36 36 H 1.09004 * 110.71770 * 279.57366 * 21 20 15 37 37 H 1.08998 * 110.92057 * 156.30112 * 21 20 15 38 38 H 1.09002 * 110.48457 * 203.40166 * 22 21 20 39 39 H 1.09002 * 110.48688 * 80.76239 * 22 21 20 40 40 H 1.09004 * 110.02684 * 238.56818 * 23 15 14 41 41 H 1.08998 * 110.03198 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5752 -0.0010 11 6 5.3249 -2.8214 -0.0009 12 8 6.1151 -1.8972 -0.0014 13 7 5.7743 -4.0920 -0.0064 14 6 7.2146 -4.3597 -0.0125 15 6 7.4540 -5.8656 0.1135 16 6 6.7572 -6.4038 1.3648 17 6 7.2996 -5.7018 2.5831 18 8 8.2272 -4.9351 2.4755 19 8 6.7521 -5.9282 3.7875 20 6 8.9675 -6.1558 0.1854 21 6 9.1397 -7.4708 -0.6161 22 6 8.1360 -7.2950 -1.7825 23 6 6.9254 -6.5898 -1.1369 24 1 -0.4850 0.8401 0.0004 25 1 3.8753 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8912 27 1 3.3696 -3.3125 -0.0002 28 1 5.1440 -4.8294 -0.0064 29 1 7.6471 -3.9999 -0.9461 30 1 7.6832 -3.8457 0.8268 31 1 5.6847 -6.2239 1.2892 32 1 6.9408 -7.4747 1.4508 33 1 7.1343 -5.4551 4.5394 34 1 9.5332 -5.3487 -0.2800 35 1 9.2805 -6.2950 1.2202 36 1 8.8739 -8.3329 -0.0043 37 1 10.1578 -7.5661 -0.9935 38 1 7.8431 -8.2655 -2.1833 39 1 8.5671 -6.6720 -2.5662 40 1 6.1730 -7.3253 -0.8522 41 1 6.4979 -5.8686 -1.8334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068347.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:41 Heat of formation + Delta-G solvation = -165.988994 kcal Electronic energy + Delta-G solvation = -23071.361143 eV Core-core repulsion = 19563.351537 eV Total energy + Delta-G solvation = -3508.009606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.92745 -40.78326 -39.46339 -36.99814 -36.25135 -35.50556 -34.38534 -32.45825 -30.12062 -29.56760 -28.54820 -25.58553 -23.92714 -22.92609 -22.05714 -21.34527 -20.18474 -19.56524 -18.96077 -18.35798 -17.60867 -17.11897 -17.06195 -16.68739 -16.30682 -16.19887 -15.80978 -15.31933 -14.95248 -14.67448 -14.38239 -14.31802 -13.99376 -13.89708 -13.57023 -13.05546 -13.01031 -12.71374 -12.51335 -12.25223 -11.94168 -11.92712 -11.83149 -11.74634 -11.63925 -11.46011 -11.32977 -11.27655 -11.24606 -10.91586 -10.30110 -9.64478 -8.39698 -6.46056 1.27518 1.32755 1.34890 1.48431 1.84498 2.20128 2.21397 2.28797 2.95963 3.44397 3.48894 3.54731 3.71668 4.08423 4.29788 4.35008 4.45413 4.49920 4.61934 4.65209 4.73686 4.78293 4.84909 4.89292 5.01861 5.04567 5.11194 5.16527 5.25124 5.29653 5.36876 5.43877 5.51473 5.54613 5.56070 5.71948 5.98149 6.28197 6.55837 7.02847 7.14685 7.27142 7.66683 8.74879 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.003756 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.432391 B = 7452.801082 C = 7854.293412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.720 5.720 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.729 5.729 14 C 0.143 3.857 15 C -0.051 4.051 16 C -0.103 4.103 17 C 0.473 3.527 18 O -0.539 6.539 19 O -0.519 6.519 20 C -0.109 4.109 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.117 4.117 24 H 0.273 0.727 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.406 0.594 28 H 0.409 0.591 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.423 0.577 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.081 -21.236 1.440 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.127 3.873 10 N -0.374 5.374 11 C 0.392 3.608 12 O -0.531 6.531 13 N -0.387 5.387 14 C 0.019 3.981 15 C -0.052 4.052 16 C -0.140 4.140 17 C 0.317 3.683 18 O -0.430 6.430 19 O -0.332 6.332 20 C -0.147 4.147 21 C -0.157 4.157 22 C -0.159 4.159 23 C -0.154 4.154 24 H 0.082 0.918 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.241 0.759 28 H 0.246 0.754 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.135 0.865 32 H 0.162 0.838 33 H 0.284 0.716 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.692 -20.278 1.084 26.287 hybrid contribution -0.215 1.091 0.610 1.268 sum 16.478 -19.188 1.694 25.349 Atomic orbital electron populations 1.69967 1.07540 1.28589 1.50726 1.25525 0.95509 1.02453 0.93625 0.85900 0.79172 0.79601 0.79467 1.18955 1.19646 1.18905 1.21254 0.89693 0.94687 1.52536 0.91957 1.18938 0.93178 0.79886 0.95313 1.45072 1.04489 1.09886 1.77944 1.16269 0.82682 0.83956 0.77914 1.90839 1.56390 1.45255 1.60586 1.44953 1.08615 1.04922 1.80183 1.21504 0.79118 0.96261 1.01258 1.21274 0.97182 0.91867 0.94849 1.21671 1.02575 1.02756 0.87038 1.23972 0.79845 0.79128 0.85376 1.90714 1.29784 1.35955 1.86524 1.84501 1.61834 1.68090 1.18812 1.22435 0.92978 0.98277 1.01003 1.22542 0.99736 0.96724 0.96730 1.22344 0.95123 1.00870 0.97548 1.22322 0.99062 0.99569 0.94459 0.91810 0.97554 0.97442 0.75871 0.75388 0.93235 0.92542 0.86529 0.83832 0.71621 0.92567 0.91445 0.89933 0.91088 0.89807 0.92368 0.88529 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.96 21.44 0.30 -55.33 16 2 C 0.03 1.68 5.47 84.65 0.46 2.14 16 3 Si 0.93 44.96 27.47 68.60 1.88 46.84 16 4 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -12.84 6.54 99.48 0.65 -12.19 16 7 C -0.54 -30.37 9.83 25.60 0.25 -30.11 16 8 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 9 C 0.25 12.81 4.50 85.63 0.38 13.19 16 10 N -0.72 -30.00 5.55 -482.30 -2.68 -32.68 16 11 C 0.69 28.10 8.57 179.06 1.53 29.63 16 12 O -0.65 -32.73 16.34 -3.99 -0.07 -32.80 16 13 N -0.73 -20.53 4.93 -478.55 -2.36 -22.89 16 14 C 0.14 3.82 3.85 86.38 0.33 4.16 16 15 C -0.05 -0.85 0.36 -51.46 -0.02 -0.87 16 16 C -0.10 -1.39 4.41 29.85 0.13 -1.26 16 17 C 0.47 9.43 7.50 71.24 0.53 9.96 16 18 O -0.54 -14.64 12.78 21.96 0.28 -14.36 16 19 O -0.52 -8.51 13.42 -51.41 -0.69 -9.20 16 20 C -0.11 -1.84 5.15 31.70 0.16 -1.67 16 21 C -0.12 -1.33 6.91 31.91 0.22 -1.11 16 22 C -0.12 -1.33 6.83 31.66 0.22 -1.12 16 23 C -0.12 -1.44 5.69 31.32 0.18 -1.26 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.01 0.35 7.20 -2.39 -0.02 0.34 16 26 H 0.01 0.41 7.57 -2.38 -0.02 0.39 16 27 H 0.41 14.38 8.34 -92.70 -0.77 13.61 16 28 H 0.41 8.34 6.98 -92.70 -0.65 7.70 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.92 5.85 -2.39 -0.01 1.90 16 31 H 0.12 1.34 6.77 -2.38 -0.02 1.32 16 32 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.42 4.27 9.10 -74.06 -0.67 3.59 16 34 H 0.06 1.14 7.85 -2.39 -0.02 1.12 16 35 H 0.07 1.26 6.02 -2.38 -0.01 1.25 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.73 7.67 -2.38 -0.02 0.71 16 41 H 0.06 0.99 7.56 -2.39 -0.02 0.97 16 Total: -1.00 -78.16 330.17 -0.01 -78.17 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -1.07 Total: 20.57 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 4.39 Total: 21.68 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.74 Total: -110.90 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -0.47 Total: -56.36 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -78.16 -0.01 -78.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068347.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.817 kcal (2) G-P(sol) polarization free energy of solvation -78.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds