Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47258 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.47071 * 30.00081 * 3 2 1 6 6 H 1.48500 * 109.47062 * 150.00267 * 3 2 1 7 7 C 1.38802 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00408 * 159.20206 * 7 2 1 9 9 N 1.36937 * 120.00143 * 339.19897 * 7 2 1 10 10 C 1.46499 * 120.00356 * 141.21150 * 9 7 2 11 11 C 1.53001 * 109.47447 * 84.69805 * 10 9 7 12 12 C 1.50699 * 109.47114 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00066 * 359.97438 * 12 11 10 14 14 O 1.34238 * 119.99644 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99939 * 321.20881 * 9 7 2 16 16 C 1.53001 * 109.47035 * 270.00101 * 15 9 7 17 17 H 1.08997 * 108.56746 * 302.93655 * 16 15 9 18 18 C 1.51783 * 108.61916 * 60.73770 * 16 15 9 19 19 C 1.52940 * 110.88707 * 188.11363 * 18 16 15 20 20 N 1.47198 * 108.68821 * 273.54752 * 19 18 16 21 21 C 1.33374 * 120.43055 * 71.94535 * 20 19 18 22 22 O 1.21283 * 119.89306 * 179.74417 * 21 20 19 23 23 C 1.51417 * 120.21588 * 359.73166 * 21 20 19 24 24 C 1.51792 * 108.61733 * 185.00010 * 16 15 9 25 25 H 0.97004 * 119.99431 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46789 * 324.69696 * 10 9 7 27 27 H 1.08994 * 109.47169 * 204.69847 * 10 9 7 28 28 H 1.09003 * 109.47066 * 300.00312 * 11 10 9 29 29 H 1.08997 * 109.47120 * 60.00098 * 11 10 9 30 30 H 0.96698 * 116.99196 * 180.02562 * 14 12 11 31 31 H 1.08999 * 109.47303 * 29.99738 * 15 9 7 32 32 H 1.08994 * 109.47428 * 150.00279 * 15 9 7 33 33 H 1.09000 * 109.19130 * 308.48018 * 18 16 15 34 34 H 1.09000 * 109.19300 * 67.75244 * 18 16 15 35 35 H 1.08993 * 109.59407 * 153.79114 * 19 18 16 36 36 H 1.08996 * 109.59660 * 33.30716 * 19 18 16 37 37 H 0.96999 * 119.78314 * 251.97379 * 20 19 18 38 38 H 1.08997 * 109.63985 * 169.07461 * 23 21 20 39 39 H 1.09007 * 109.80142 * 48.56856 * 23 21 20 40 40 H 1.09005 * 109.22245 * 292.39254 * 24 16 15 41 41 H 1.09003 * 109.22250 * 51.77896 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0375 -1.2326 -0.3327 9 7 1.3924 -2.3495 0.4201 10 6 1.6460 -3.6147 -0.2737 11 6 2.9152 -4.2588 0.2876 12 6 3.1763 -5.5599 -0.4265 13 8 2.4241 -5.9338 -1.2951 14 8 4.2445 -6.3034 -0.0977 15 6 0.4780 -2.3120 1.5640 16 6 1.2625 -2.5663 2.8527 17 1 1.7751 -3.5241 2.7637 18 6 2.3054 -1.4746 3.0085 19 6 3.2507 -1.7852 4.1701 20 7 2.6543 -1.2713 5.4138 21 6 1.5951 -1.8749 5.9548 22 8 1.1143 -1.4459 6.9824 23 6 0.9906 -3.0937 5.2901 24 6 0.2823 -2.6469 4.0089 25 1 -0.4849 0.8401 0.0004 26 1 1.7755 -3.4250 -1.3393 27 1 0.8009 -4.2866 -0.1244 28 1 3.7603 -3.5868 0.1383 29 1 2.7856 -4.4485 1.3531 30 1 4.3705 -7.1297 -0.5838 31 1 0.0012 -1.3332 1.6161 32 1 -0.2845 -3.0817 1.4451 33 1 2.8830 -1.3967 2.0874 34 1 1.8048 -0.5251 3.1980 35 1 4.2121 -1.3013 3.9984 36 1 3.3901 -2.8633 4.2496 37 1 3.0339 -0.4884 5.8426 38 1 0.2706 -3.5589 5.9634 39 1 1.7764 -3.8080 5.0441 40 1 -0.1646 -1.6657 4.1695 41 1 -0.5024 -3.3630 3.7649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = -125.813121 kcal Electronic energy + Delta-G solvation = -23816.370792 eV Core-core repulsion = 20310.103343 eV Total energy + Delta-G solvation = -3506.267449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98372 -39.83999 -37.32665 -35.97324 -35.32645 -33.58214 -32.16931 -30.85711 -29.58058 -27.50643 -25.01896 -24.06417 -23.34919 -21.46989 -20.10280 -19.60237 -19.32590 -17.83380 -17.01391 -16.90972 -16.32270 -16.10583 -15.68389 -14.82846 -14.61874 -14.06675 -13.96888 -13.61830 -13.48294 -13.09900 -12.99737 -12.73420 -12.57288 -12.00421 -11.94051 -11.68037 -11.34573 -11.24158 -11.13462 -10.91782 -10.75145 -10.58745 -10.42895 -10.29596 -10.22202 -9.93061 -9.79828 -9.59232 -9.47859 -8.79180 -8.55812 -6.69615 -5.91727 -3.51897 2.51776 2.90952 3.26156 3.33270 3.36100 3.39296 3.58641 4.36840 4.78828 5.02000 5.14766 5.24762 5.30517 5.41946 5.53361 5.59235 5.64533 5.68033 5.74381 5.83197 5.96339 6.09643 6.19055 6.27185 6.39161 6.49496 6.57794 6.69404 6.72767 6.84324 6.88339 6.97586 7.05061 7.24156 7.51424 7.61143 7.69483 8.15506 8.39530 8.47316 9.06417 9.66930 10.25916 11.08330 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.007444 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.401493 B = 3760.647598 C = 5495.159169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.023 3.977 3 Si 0.889 3.111 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.268 4.268 8 H 0.062 0.938 9 N -0.577 5.577 10 C 0.158 3.842 11 C -0.133 4.133 12 C 0.477 3.523 13 O -0.521 6.521 14 O -0.526 6.526 15 C 0.148 3.852 16 C -0.106 4.106 17 H 0.052 0.948 18 C -0.130 4.130 19 C 0.104 3.896 20 N -0.722 5.722 21 C 0.521 3.479 22 O -0.570 6.570 23 C -0.136 4.136 24 C -0.106 4.106 25 H 0.256 0.744 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.400 0.600 31 H 0.094 0.906 32 H 0.026 0.974 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.395 0.605 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 -7.814 5.186 11.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.398 4.398 8 H 0.079 0.921 9 N -0.296 5.296 10 C 0.030 3.970 11 C -0.173 4.173 12 C 0.320 3.680 13 O -0.410 6.410 14 O -0.338 6.338 15 C 0.022 3.978 16 C -0.127 4.127 17 H 0.071 0.929 18 C -0.168 4.168 19 C -0.020 4.020 20 N -0.373 5.373 21 C 0.308 3.692 22 O -0.449 6.449 23 C -0.176 4.176 24 C -0.145 4.145 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.257 0.743 31 H 0.112 0.888 32 H 0.044 0.956 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.253 -7.339 5.549 11.124 hybrid contribution 0.791 0.630 -0.219 1.035 sum 7.044 -6.709 5.330 11.092 Atomic orbital electron populations 1.70003 1.05636 1.25947 1.50356 1.25184 0.94883 0.98632 0.99212 0.86541 0.79661 0.84040 0.77984 1.21200 1.21491 1.20049 1.18857 0.93885 0.85282 1.41742 0.92085 1.43755 1.52364 1.02946 1.30577 1.20649 0.91900 0.88363 0.96051 1.22420 1.04697 0.89268 1.00952 1.24217 0.76749 0.86128 0.80907 1.90687 1.47037 1.71734 1.31504 1.84624 1.47701 1.37124 1.64349 1.21060 0.90567 1.02617 0.83536 1.21452 0.96542 0.98059 0.96638 0.92944 1.21901 0.97558 0.98769 0.98586 1.22015 0.97049 0.99305 0.83599 1.46052 1.31693 1.32227 1.27344 1.20623 0.79448 0.85483 0.83680 1.90704 1.61846 1.67282 1.25114 1.21980 1.01143 0.95588 0.98907 1.21270 0.98578 1.01957 0.92687 0.93374 0.92737 0.93709 0.88046 0.88581 0.74268 0.88811 0.95580 0.87119 0.92158 0.90248 0.91196 0.77033 0.89298 0.89647 0.91852 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.31 11.52 55.49 0.64 -22.67 16 2 C 0.02 0.56 4.96 -17.43 -0.09 0.48 16 3 Si 0.89 19.71 29.60 -169.99 -5.03 14.67 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.27 -6.26 7.01 -15.06 -0.11 -6.37 16 8 H 0.06 1.41 7.91 -52.48 -0.42 1.00 16 9 N -0.58 -12.15 2.21 -173.24 -0.38 -12.53 16 10 C 0.16 2.99 5.01 -4.04 -0.02 2.97 16 11 C -0.13 -2.00 6.11 -27.88 -0.17 -2.17 16 12 C 0.48 7.04 8.33 36.01 0.30 7.34 16 13 O -0.52 -9.31 16.74 -18.75 -0.31 -9.62 16 14 O -0.53 -6.07 13.42 -39.28 -0.53 -6.60 16 15 C 0.15 2.96 4.79 -4.04 -0.02 2.94 16 16 C -0.11 -1.68 1.93 -91.85 -0.18 -1.86 16 17 H 0.05 0.77 6.24 -51.93 -0.32 0.44 16 18 C -0.13 -2.07 4.69 -27.38 -0.13 -2.20 16 19 C 0.10 1.28 6.46 -3.69 -0.02 1.26 16 20 N -0.72 -9.74 5.27 -59.93 -0.32 -10.06 16 21 C 0.52 8.17 7.06 -11.26 -0.08 8.09 16 22 O -0.57 -11.08 17.92 5.55 0.10 -10.98 16 23 C -0.14 -1.80 5.57 -27.50 -0.15 -1.95 16 24 C -0.11 -1.56 4.91 -27.31 -0.13 -1.69 16 25 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 26 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 27 H 0.04 0.85 7.79 -51.93 -0.40 0.45 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.10 1.32 6.51 -51.93 -0.34 0.98 16 30 H 0.40 2.86 9.10 45.56 0.41 3.27 16 31 H 0.09 2.21 5.59 -51.93 -0.29 1.92 16 32 H 0.03 0.51 7.79 -51.93 -0.40 0.11 16 33 H 0.11 1.98 5.56 -51.93 -0.29 1.70 16 34 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.77 6.71 -51.93 -0.35 0.43 16 37 H 0.39 4.90 8.91 -40.82 -0.36 4.54 16 38 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 39 H 0.09 0.97 6.78 -51.93 -0.35 0.62 16 40 H 0.06 1.05 7.86 -51.93 -0.41 0.64 16 41 H 0.07 0.96 8.05 -51.93 -0.42 0.54 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -30.28 328.45 -6.86 -37.14 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.18 Total: 8.87 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -0.80 Total: 6.83 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.06 Total: -45.26 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.74 Total: -27.20 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.28 -6.86 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.675 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds