Wall clock time and date at job start Tue Mar 31 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48504 * 109.47258 * 270.00152 * 3 2 1 5 5 H 1.48500 * 109.47071 * 30.00081 * 3 2 1 6 6 H 1.48500 * 109.47062 * 150.00267 * 3 2 1 7 7 C 1.38802 * 119.99693 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00408 * 159.20206 * 7 2 1 9 9 N 1.36937 * 120.00143 * 339.19897 * 7 2 1 10 10 C 1.46499 * 120.00356 * 141.21150 * 9 7 2 11 11 C 1.53001 * 109.47447 * 84.69805 * 10 9 7 12 12 C 1.50699 * 109.47114 * 180.02562 * 11 10 9 13 13 O 1.20823 * 120.00066 * 359.97438 * 12 11 10 14 14 O 1.34238 * 119.99644 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99939 * 321.20881 * 9 7 2 16 16 C 1.53001 * 109.47035 * 270.00101 * 15 9 7 17 17 H 1.08997 * 108.56746 * 302.93655 * 16 15 9 18 18 C 1.51783 * 108.61916 * 60.73770 * 16 15 9 19 19 C 1.52940 * 110.88707 * 188.11363 * 18 16 15 20 20 N 1.47198 * 108.68821 * 273.54752 * 19 18 16 21 21 C 1.33374 * 120.43055 * 71.94535 * 20 19 18 22 22 O 1.21283 * 119.89306 * 179.74417 * 21 20 19 23 23 C 1.51417 * 120.21588 * 359.73166 * 21 20 19 24 24 C 1.51792 * 108.61733 * 185.00010 * 16 15 9 25 25 H 0.97004 * 119.99431 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.46789 * 324.69696 * 10 9 7 27 27 H 1.08994 * 109.47169 * 204.69847 * 10 9 7 28 28 H 1.09003 * 109.47066 * 300.00312 * 11 10 9 29 29 H 1.08997 * 109.47120 * 60.00098 * 11 10 9 30 30 H 0.96698 * 116.99196 * 180.02562 * 14 12 11 31 31 H 1.08999 * 109.47303 * 29.99738 * 15 9 7 32 32 H 1.08994 * 109.47428 * 150.00279 * 15 9 7 33 33 H 1.09000 * 109.19130 * 308.48018 * 18 16 15 34 34 H 1.09000 * 109.19300 * 67.75244 * 18 16 15 35 35 H 1.08993 * 109.59407 * 153.79114 * 19 18 16 36 36 H 1.08996 * 109.59660 * 33.30716 * 19 18 16 37 37 H 0.96999 * 119.78314 * 251.97379 * 20 19 18 38 38 H 1.08997 * 109.63985 * 169.07461 * 23 21 20 39 39 H 1.09007 * 109.80142 * 48.56856 * 23 21 20 40 40 H 1.09005 * 109.22245 * 292.39254 * 24 16 15 41 41 H 1.09003 * 109.22250 * 51.77896 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0375 -1.2326 -0.3327 9 7 1.3924 -2.3495 0.4201 10 6 1.6460 -3.6147 -0.2737 11 6 2.9152 -4.2588 0.2876 12 6 3.1763 -5.5599 -0.4265 13 8 2.4241 -5.9338 -1.2951 14 8 4.2445 -6.3034 -0.0977 15 6 0.4780 -2.3120 1.5640 16 6 1.2625 -2.5663 2.8527 17 1 1.7751 -3.5241 2.7637 18 6 2.3054 -1.4746 3.0085 19 6 3.2507 -1.7852 4.1701 20 7 2.6543 -1.2713 5.4138 21 6 1.5951 -1.8749 5.9548 22 8 1.1143 -1.4459 6.9824 23 6 0.9906 -3.0937 5.2901 24 6 0.2823 -2.6469 4.0089 25 1 -0.4849 0.8401 0.0004 26 1 1.7755 -3.4250 -1.3393 27 1 0.8009 -4.2866 -0.1244 28 1 3.7603 -3.5868 0.1383 29 1 2.7856 -4.4485 1.3531 30 1 4.3705 -7.1297 -0.5838 31 1 0.0012 -1.3332 1.6161 32 1 -0.2845 -3.0817 1.4451 33 1 2.8830 -1.3967 2.0874 34 1 1.8048 -0.5251 3.1980 35 1 4.2121 -1.3013 3.9984 36 1 3.3901 -2.8633 4.2496 37 1 3.0339 -0.4884 5.8426 38 1 0.2706 -3.5589 5.9634 39 1 1.7764 -3.8080 5.0441 40 1 -0.1646 -1.6657 4.1695 41 1 -0.5024 -3.3630 3.7649 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:07 Heat of formation + Delta-G solvation = -147.200389 kcal Electronic energy + Delta-G solvation = -23817.298213 eV Core-core repulsion = 20310.103343 eV Total energy + Delta-G solvation = -3507.194871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.18180 -41.01529 -38.76740 -37.09756 -36.70015 -34.82329 -33.85767 -32.15551 -31.00796 -28.88581 -26.64923 -25.37711 -24.56111 -22.90131 -21.46517 -20.89585 -20.48402 -18.99878 -18.55451 -18.16199 -17.54052 -17.37258 -16.91733 -16.53563 -15.92949 -15.45564 -15.42934 -14.97321 -14.82237 -14.41218 -14.22571 -13.99782 -13.88640 -13.24682 -13.19833 -13.09539 -12.90408 -12.66433 -12.47176 -12.40829 -12.27195 -12.10058 -11.97192 -11.77549 -11.50884 -11.40187 -11.19270 -11.04488 -10.74861 -10.38888 -9.96301 -8.47966 -7.76134 -5.38711 1.36924 1.47138 1.52756 1.57870 1.70168 2.28573 2.51045 2.57955 3.32073 3.66361 3.72652 4.02726 4.12793 4.21402 4.26387 4.34792 4.48165 4.57771 4.67291 4.69479 4.75458 4.84562 4.96569 4.98375 5.07136 5.14660 5.26568 5.33729 5.41019 5.46208 5.56388 5.74036 5.77068 5.87360 5.98547 5.99165 6.38601 6.54158 7.14792 7.25517 7.31173 7.91851 8.45855 9.19592 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010506 B = 0.007444 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.401493 B = 3760.647598 C = 5495.159169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.026 4.026 3 Si 0.936 3.064 4 H -0.292 1.292 5 H -0.305 1.305 6 H -0.256 1.256 7 C -0.249 4.249 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.160 3.840 11 C -0.119 4.119 12 C 0.489 3.511 13 O -0.559 6.559 14 O -0.513 6.513 15 C 0.151 3.849 16 C -0.093 4.093 17 H 0.079 0.921 18 C -0.124 4.124 19 C 0.111 3.889 20 N -0.714 5.714 21 C 0.513 3.487 22 O -0.615 6.615 23 C -0.126 4.126 24 C -0.100 4.100 25 H 0.246 0.754 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.423 0.577 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.094 0.906 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.399 0.601 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.034 0.966 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -9.864 6.164 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.765 3.235 4 H -0.220 1.220 5 H -0.232 1.232 6 H -0.180 1.180 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.308 5.308 10 C 0.034 3.966 11 C -0.159 4.159 12 C 0.333 3.667 13 O -0.450 6.450 14 O -0.326 6.326 15 C 0.025 3.975 16 C -0.113 4.113 17 H 0.097 0.903 18 C -0.162 4.162 19 C -0.012 4.012 20 N -0.364 5.364 21 C 0.301 3.699 22 O -0.498 6.498 23 C -0.166 4.166 24 C -0.139 4.139 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.284 0.716 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.053 0.947 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.939 -9.430 6.517 14.537 hybrid contribution 0.002 1.182 -0.605 1.328 sum 8.942 -8.248 5.912 13.525 Atomic orbital electron populations 1.70142 1.06994 1.25604 1.53353 1.25717 0.95207 1.01003 1.00412 0.85772 0.79276 0.81103 0.77309 1.21950 1.23225 1.17984 1.19090 0.93881 0.85782 1.39161 0.91531 1.43895 1.52429 1.03175 1.31338 1.20563 0.93896 0.87573 0.94593 1.22051 1.02400 0.89591 1.01892 1.23917 0.76819 0.86032 0.79948 1.90696 1.48559 1.72647 1.33129 1.84538 1.45753 1.38107 1.64196 1.20955 0.90857 1.00287 0.85411 1.21267 0.96257 0.99226 0.94544 0.90256 1.21769 0.97725 0.97198 0.99548 1.22064 0.96632 1.01299 0.81196 1.46076 1.31019 1.32033 1.27254 1.21108 0.79519 0.86061 0.83215 1.90684 1.63217 1.68643 1.27265 1.21945 1.02003 0.95015 0.97593 1.21178 0.98678 1.00883 0.93163 0.94447 0.95522 0.94194 0.87302 0.86215 0.71619 0.92779 0.96053 0.88753 0.95564 0.87775 0.88383 0.76522 0.88423 0.86465 0.94743 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.66 11.52 21.65 0.25 -50.41 16 2 C -0.03 -1.29 4.96 84.86 0.42 -0.87 16 3 Si 0.94 41.09 29.60 68.60 2.03 43.12 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.31 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.25 -11.56 7.01 84.03 0.59 -10.97 16 8 H 0.07 3.00 7.91 -2.91 -0.02 2.97 16 9 N -0.59 -24.52 2.21 -702.01 -1.55 -26.07 16 10 C 0.16 5.93 5.01 86.38 0.43 6.36 16 11 C -0.12 -3.23 6.11 29.85 0.18 -3.05 16 12 C 0.49 12.93 8.33 71.24 0.59 13.52 16 13 O -0.56 -19.02 16.74 21.97 0.37 -18.65 16 14 O -0.51 -9.65 13.42 -51.50 -0.69 -10.34 16 15 C 0.15 6.03 4.79 86.38 0.41 6.44 16 16 C -0.09 -2.74 1.93 -11.59 -0.02 -2.76 16 17 H 0.08 1.96 6.24 -2.39 -0.01 1.95 16 18 C -0.12 -3.73 4.69 30.17 0.14 -3.58 16 19 C 0.11 2.31 6.46 86.23 0.56 2.87 16 20 N -0.71 -17.53 5.27 -462.68 -2.44 -19.97 16 21 C 0.51 15.13 7.06 88.10 0.62 15.75 16 22 O -0.61 -23.52 17.92 -3.04 -0.05 -23.58 16 23 C -0.13 -2.94 5.57 30.10 0.17 -2.77 16 24 C -0.10 -2.78 4.91 30.22 0.15 -2.64 16 25 H 0.25 13.53 8.31 -92.70 -0.77 12.76 16 26 H 0.03 1.11 8.04 -2.38 -0.02 1.09 16 27 H 0.04 1.50 7.79 -2.39 -0.02 1.48 16 28 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.12 2.70 6.51 -2.39 -0.02 2.69 16 30 H 0.42 4.29 9.10 -74.06 -0.67 3.61 16 31 H 0.05 2.66 5.59 -2.39 -0.01 2.64 16 32 H 0.02 0.84 7.79 -2.39 -0.02 0.82 16 33 H 0.09 3.18 5.56 -2.39 -0.01 3.17 16 34 H 0.03 0.95 8.05 -2.39 -0.02 0.93 16 35 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 1.58 6.71 -2.39 -0.02 1.57 16 37 H 0.40 9.14 8.91 -92.71 -0.83 8.32 16 38 H 0.10 2.17 8.13 -2.39 -0.02 2.15 16 39 H 0.12 2.03 6.78 -2.38 -0.02 2.01 16 40 H 0.03 1.15 7.86 -2.38 -0.02 1.13 16 41 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 Total: -1.00 -68.65 328.45 1.72 -66.92 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.43 Total: 20.68 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 4.25 Total: 18.30 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -3.74 Total: -96.45 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.38 Total: -52.57 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -68.65 1.72 -66.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.278 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds