Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99762 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00043 * 180.02562 * 14 13 12 17 17 C 1.46921 * 120.63201 * 359.71207 * 16 14 13 18 18 C 1.52762 * 109.01165 * 233.58889 * 17 16 14 19 19 C 1.53043 * 109.38400 * 305.59147 * 18 17 16 20 20 C 1.50690 * 109.45003 * 181.25384 * 19 18 17 21 21 O 1.20833 * 119.99888 * 239.93711 * 20 19 18 22 22 O 1.34228 * 120.00462 * 59.93377 * 20 19 18 23 23 C 1.53042 * 109.53732 * 61.23520 * 19 18 17 24 24 C 1.46926 * 120.63150 * 180.02562 * 16 14 13 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 30 30 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 31 31 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 32 32 H 1.09001 * 109.58605 * 353.42305 * 17 16 14 33 33 H 1.08999 * 109.58710 * 113.84951 * 17 16 14 34 34 H 1.08994 * 109.56886 * 185.55202 * 18 17 16 35 35 H 1.09005 * 109.38466 * 65.51245 * 18 17 16 36 36 H 1.09008 * 109.45501 * 301.21794 * 19 18 17 37 37 H 0.96702 * 117.00429 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.49532 * 178.68947 * 23 19 18 39 39 H 1.08991 * 109.52416 * 58.60411 * 23 19 18 40 40 H 1.09001 * 109.58799 * 246.15178 * 24 16 14 41 41 H 1.09002 * 109.58441 * 6.42857 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5214 3.5558 15 8 2.8688 -1.6983 3.4700 16 7 2.7286 0.1207 4.7324 17 6 2.3981 1.5474 4.8507 18 6 3.5973 2.2889 5.4385 19 6 4.0078 1.6271 6.7560 20 6 5.1712 2.3762 7.3527 21 8 6.2193 1.8077 7.5485 22 8 5.0434 3.6750 7.6667 23 6 4.4161 0.1756 6.4942 24 6 3.2213 -0.5910 5.9196 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 2.9173 -1.1204 1.0288 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 2.1674 1.9519 3.8651 33 1 1.5379 1.6699 5.5088 34 1 3.3291 3.3293 5.6221 35 1 4.4292 2.2463 4.7354 36 1 3.1676 1.6485 7.4502 37 1 5.8170 4.1129 8.0473 38 1 4.7304 -0.2881 7.4292 39 1 5.2401 0.1520 5.7813 40 1 2.4297 -0.6469 6.6669 41 1 3.5311 -1.5979 5.6396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -129.934356 kcal Electronic energy + Delta-G solvation = -22646.743060 eV Core-core repulsion = 19140.296901 eV Total energy + Delta-G solvation = -3506.446159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97215 -39.81426 -37.42786 -36.45645 -35.57364 -33.28922 -32.52628 -31.49927 -29.13290 -27.00212 -25.58535 -24.80626 -23.35562 -22.64481 -20.73967 -19.80592 -19.01311 -18.40589 -17.45854 -16.86624 -16.33682 -15.97003 -15.64296 -15.51185 -14.80455 -14.34995 -14.23525 -13.95799 -13.85643 -13.51983 -13.22944 -12.79281 -12.68359 -12.44970 -12.14417 -11.91240 -11.74904 -11.56614 -11.29542 -11.16606 -11.01970 -10.93448 -10.76716 -10.71545 -10.36759 -10.15010 -10.05893 -9.41323 -8.83962 -8.70066 -8.48597 -7.30514 -6.04212 -4.09926 1.83075 2.62070 2.90639 2.98978 3.29635 3.37560 3.43385 4.18114 4.27269 4.40645 4.53707 4.67539 4.83342 4.97789 4.99520 5.17472 5.25693 5.29069 5.33820 5.38980 5.49005 5.53007 5.69960 5.77771 5.83169 5.86938 5.92908 6.13344 6.48061 6.81773 7.09200 7.17040 7.36389 7.48850 7.51923 7.78544 7.86212 8.24794 8.35446 8.42142 8.64673 9.00491 9.56226 11.02341 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.003129 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.949279 B = 8947.341696 C = 9116.182219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.673 5.673 13 C 0.045 3.955 14 C 0.517 3.483 15 O -0.522 6.522 16 N -0.625 5.625 17 C 0.109 3.891 18 C -0.128 4.128 19 C -0.078 4.078 20 C 0.483 3.517 21 O -0.514 6.514 22 O -0.516 6.516 23 C -0.119 4.119 24 C 0.114 3.886 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.003 0.997 28 H 0.260 0.740 29 H 0.341 0.659 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.410 0.590 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 7.319 20.874 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.306 5.306 13 C -0.088 4.088 14 C 0.306 3.694 15 O -0.396 6.396 16 N -0.362 5.362 17 C -0.014 4.014 18 C -0.167 4.167 19 C -0.097 4.097 20 C 0.325 3.675 21 O -0.401 6.401 22 O -0.328 6.328 23 C -0.158 4.158 24 C -0.009 4.009 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.268 0.732 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.548 6.164 20.696 21.884 hybrid contribution 1.587 0.647 -0.675 1.841 sum 5.134 6.811 20.022 21.763 Atomic orbital electron populations 1.21737 0.97743 0.99581 0.99309 1.19159 0.92730 0.92256 0.85358 0.98060 1.21302 1.31383 1.12585 0.90293 0.91971 1.24908 0.95011 0.95005 0.99062 1.69897 1.36730 1.22983 1.23400 0.86445 0.78631 0.79673 0.82710 1.19663 1.20950 1.21099 1.60514 1.33448 1.31720 1.04943 1.21846 1.01047 0.94939 0.90940 1.21117 0.76804 0.87666 0.83828 1.90671 1.48913 1.15961 1.84015 1.48225 1.67412 1.10400 1.10119 1.21631 0.96384 0.80378 1.02992 1.21893 0.99799 1.00155 0.94806 1.21083 0.95025 0.95035 0.98588 1.23561 0.89569 0.80050 0.74344 1.90739 1.30112 1.68849 1.50419 1.84537 1.46924 1.25578 1.75745 1.21862 0.99055 0.92144 1.02720 1.21504 0.95071 0.97446 0.86895 0.94769 0.89945 0.97803 0.92972 0.84061 0.93428 0.88900 0.88507 0.90832 0.89035 0.90619 0.86983 0.73166 0.89807 0.90388 0.91472 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.73 7.62 -52.49 -0.40 1.33 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.67 -14.99 5.93 -109.22 -0.65 -15.63 16 13 C 0.05 0.79 4.31 -4.98 -0.02 0.76 16 14 C 0.52 8.53 7.74 -10.99 -0.08 8.45 16 15 O -0.52 -10.61 15.61 5.56 0.09 -10.52 16 16 N -0.62 -7.49 2.98 -173.06 -0.52 -8.00 16 17 C 0.11 0.94 6.31 -3.93 -0.02 0.91 16 18 C -0.13 -0.95 5.28 -26.83 -0.14 -1.09 16 19 C -0.08 -0.58 2.59 -91.73 -0.24 -0.82 16 20 C 0.48 4.19 7.63 36.00 0.27 4.46 16 21 O -0.51 -6.20 16.74 -18.76 -0.31 -6.51 16 22 O -0.52 -3.22 13.30 -39.25 -0.52 -3.74 16 23 C -0.12 -1.08 4.65 -26.63 -0.12 -1.21 16 24 C 0.11 1.17 6.43 -3.73 -0.02 1.14 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 27 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.34 7.83 7.92 -39.29 -0.31 7.51 16 30 H 0.05 0.78 7.60 -51.93 -0.39 0.38 16 31 H 0.09 1.52 7.25 -51.93 -0.38 1.14 16 32 H 0.10 0.85 5.93 -51.93 -0.31 0.54 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.11 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.41 1.00 9.10 45.56 0.41 1.42 16 38 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 39 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.22 7.00 -51.93 -0.36 0.86 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -34.05 334.41 -7.23 -41.28 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.36 Total: 4.27 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.61 Total: 2.02 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.54 Total: -48.21 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.75 Total: -20.78 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.05 -7.23 -41.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.650 kcal (2) G-P(sol) polarization free energy of solvation -34.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds