Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99762 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00043 * 180.02562 * 14 13 12 17 17 C 1.46921 * 120.63201 * 359.71207 * 16 14 13 18 18 C 1.52762 * 109.01165 * 233.58889 * 17 16 14 19 19 C 1.53043 * 109.38400 * 305.59147 * 18 17 16 20 20 C 1.50690 * 109.45003 * 181.25384 * 19 18 17 21 21 O 1.20833 * 119.99888 * 239.93711 * 20 19 18 22 22 O 1.34228 * 120.00462 * 59.93377 * 20 19 18 23 23 C 1.53042 * 109.53732 * 61.23520 * 19 18 17 24 24 C 1.46926 * 120.63150 * 180.02562 * 16 14 13 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.00902 * 110.99927 * 151.04624 * 12 2 1 30 30 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 31 31 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 32 32 H 1.09001 * 109.58605 * 353.42305 * 17 16 14 33 33 H 1.08999 * 109.58710 * 113.84951 * 17 16 14 34 34 H 1.08994 * 109.56886 * 185.55202 * 18 17 16 35 35 H 1.09005 * 109.38466 * 65.51245 * 18 17 16 36 36 H 1.09008 * 109.45501 * 301.21794 * 19 18 17 37 37 H 0.96702 * 117.00429 * 179.97438 * 22 20 19 38 38 H 1.09000 * 109.49532 * 178.68947 * 23 19 18 39 39 H 1.08991 * 109.52416 * 58.60411 * 23 19 18 40 40 H 1.09001 * 109.58799 * 246.15178 * 24 16 14 41 41 H 1.09002 * 109.58441 * 6.42857 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5885 -0.5214 3.5558 15 8 2.8688 -1.6983 3.4700 16 7 2.7286 0.1207 4.7324 17 6 2.3981 1.5474 4.8507 18 6 3.5973 2.2889 5.4385 19 6 4.0078 1.6271 6.7560 20 6 5.1712 2.3762 7.3527 21 8 6.2193 1.8077 7.5485 22 8 5.0434 3.6750 7.6667 23 6 4.4161 0.1756 6.4942 24 6 3.2213 -0.5910 5.9196 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 2.9173 -1.1204 1.0288 30 1 2.7588 1.0463 2.1182 31 1 1.0870 0.6164 2.5525 32 1 2.1674 1.9519 3.8651 33 1 1.5379 1.6699 5.5088 34 1 3.3291 3.3293 5.6221 35 1 4.4292 2.2463 4.7354 36 1 3.1676 1.6485 7.4502 37 1 5.8170 4.1129 8.0473 38 1 4.7304 -0.2881 7.4292 39 1 5.2401 0.1520 5.7813 40 1 2.4297 -0.6469 6.6669 41 1 3.5311 -1.5979 5.6396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060506.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -155.465279 kcal Electronic energy + Delta-G solvation = -22647.850164 eV Core-core repulsion = 19140.296901 eV Total energy + Delta-G solvation = -3507.553263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.72309 -40.85700 -38.45226 -37.36140 -37.10144 -34.55832 -34.11035 -32.36126 -30.86760 -28.11862 -27.34696 -26.34851 -24.18092 -23.46914 -21.88084 -21.35782 -20.04809 -19.04926 -18.79978 -18.12377 -17.46911 -17.05688 -16.85676 -16.55862 -16.51504 -15.57235 -15.31996 -15.05552 -14.89572 -14.61052 -14.46422 -14.18671 -13.98637 -13.44686 -13.37080 -13.07284 -12.92340 -12.83448 -12.66510 -12.55809 -12.30232 -12.26407 -12.19236 -11.99351 -11.87622 -11.71791 -11.49824 -10.93538 -10.72573 -10.55346 -9.69242 -9.07341 -8.14411 -6.27312 1.18062 1.40771 1.43273 1.55105 1.62304 1.93076 2.12647 2.42348 3.14271 3.44978 3.59135 3.65433 3.77518 3.94050 4.02848 4.28658 4.36780 4.40051 4.42122 4.46044 4.67167 4.71633 4.77547 4.84519 4.84982 4.99326 5.05356 5.09302 5.20243 5.22084 5.45068 5.57779 5.62447 5.66710 5.85072 6.22357 6.30997 6.43561 6.73593 6.93359 6.98695 7.22012 7.42717 8.91274 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.003129 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.949279 B = 8947.341696 C = 9116.182219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.218 3.782 3 H -0.017 1.017 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.683 5.683 13 C 0.046 3.954 14 C 0.516 3.484 15 O -0.571 6.571 16 N -0.614 5.614 17 C 0.102 3.898 18 C -0.121 4.121 19 C -0.075 4.075 20 C 0.489 3.511 21 O -0.555 6.555 22 O -0.508 6.508 23 C -0.112 4.112 24 C 0.113 3.887 25 H 0.022 0.978 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.427 0.573 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 8.717 22.278 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 H 0.001 0.999 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.086 4.086 14 C 0.305 3.695 15 O -0.449 6.449 16 N -0.349 5.349 17 C -0.020 4.020 18 C -0.159 4.159 19 C -0.094 4.094 20 C 0.333 3.667 21 O -0.446 6.446 22 O -0.321 6.321 23 C -0.150 4.150 24 C -0.009 4.009 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.288 0.712 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.920 7.636 22.154 23.614 hybrid contribution 1.792 0.317 -1.003 2.078 sum 4.712 7.953 21.151 23.083 Atomic orbital electron populations 1.21565 0.97305 0.98816 0.99595 1.18968 0.92985 0.91080 0.85972 0.99903 1.21596 1.31833 1.12698 0.91912 0.93050 1.25637 0.95112 0.95683 1.01704 1.69989 1.37180 1.23800 1.24214 0.85485 0.78185 0.78582 0.79233 1.19742 1.20398 1.20244 1.60401 1.33070 1.32781 1.05197 1.21893 1.02400 0.94484 0.89805 1.20902 0.76750 0.87002 0.84821 1.90653 1.51477 1.17907 1.84913 1.48241 1.65653 1.11883 1.09082 1.21964 0.98040 0.77976 1.03986 1.21849 0.98573 1.01351 0.94155 1.21103 0.95583 0.93426 0.99275 1.23697 0.89045 0.80525 0.73451 1.90738 1.31694 1.69833 1.52346 1.84491 1.47947 1.24355 1.75315 1.21737 0.97496 0.93650 1.02164 1.21623 0.96443 0.96189 0.86609 0.95900 0.92052 0.95028 0.92669 0.85002 0.92083 0.87360 0.88629 0.87535 0.86495 0.92516 0.83770 0.71163 0.88997 0.93150 0.88381 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.62 9.19 71.98 0.66 -4.96 16 2 C 0.22 11.10 2.60 44.17 0.11 11.22 16 3 H -0.02 -0.89 7.80 -2.39 -0.02 -0.91 16 4 C -0.54 -30.52 8.59 25.60 0.22 -30.30 16 5 H 0.05 2.93 7.62 -2.91 -0.02 2.91 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -51.73 11.32 21.45 0.24 -51.49 16 8 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 N -0.68 -30.76 5.93 -499.47 -2.96 -33.72 16 13 C 0.05 1.59 4.31 85.56 0.37 1.96 16 14 C 0.52 16.91 7.74 87.66 0.68 17.59 16 15 O -0.57 -23.83 15.61 -3.03 -0.05 -23.87 16 16 N -0.61 -13.75 2.98 -819.84 -2.44 -16.19 16 17 C 0.10 1.43 6.31 86.22 0.54 1.97 16 18 C -0.12 -1.44 5.28 30.53 0.16 -1.28 16 19 C -0.08 -0.90 2.59 -11.51 -0.03 -0.93 16 20 C 0.49 7.40 7.63 71.23 0.54 7.95 16 21 O -0.56 -12.92 16.74 21.94 0.37 -12.55 16 22 O -0.51 -4.80 13.30 -51.40 -0.68 -5.48 16 23 C -0.11 -1.89 4.65 30.66 0.14 -1.75 16 24 C 0.11 2.17 6.43 86.35 0.56 2.73 16 25 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 27 H 0.03 1.32 7.45 -2.38 -0.02 1.30 16 28 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 29 H 0.33 15.77 7.92 -89.69 -0.71 15.05 16 30 H 0.06 1.94 7.60 -2.39 -0.02 1.92 16 31 H 0.11 3.33 7.25 -2.39 -0.02 3.32 16 32 H 0.10 1.41 5.93 -2.39 -0.01 1.39 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.12 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.14 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.43 0.96 9.10 -74.06 -0.67 0.29 16 38 H 0.09 1.42 8.07 -2.39 -0.02 1.40 16 39 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.83 7.00 -2.39 -0.02 1.81 16 Total: -1.00 -75.13 334.41 0.58 -74.55 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -0.33 Total: 17.04 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.41 Total: 5.65 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -5.16 Total: -101.40 kcal Atomic # 8 Polarization: -41.54 SS G_CDS: -0.36 Total: -41.90 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.13 0.58 -74.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060506.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.918 kcal (2) G-P(sol) polarization free energy of solvation -75.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds