Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.21283 * 120.00011 * 120.00264 * 12 2 1 14 14 N 1.34775 * 120.00072 * 299.99711 * 12 2 1 15 15 C 1.47779 * 118.54765 * 0.02562 * 14 12 2 16 16 C 1.54022 * 111.55907 * 221.88952 * 15 14 12 17 17 N 1.44754 * 109.68322 * 39.99419 * 16 15 14 18 18 C 1.46898 * 111.00453 * 142.14749 * 17 16 15 19 19 C 1.46258 * 110.63554 * 265.83949 * 17 16 15 20 20 C 1.47549 * 114.38044 * 87.75693 * 19 17 16 21 21 H 1.08998 * 109.42808 * 57.85676 * 20 19 17 22 22 C 1.50694 * 109.42951 * 177.75081 * 20 19 17 23 23 O 1.20836 * 120.00049 * 119.99742 * 22 20 19 24 24 O 1.34225 * 120.00140 * 300.00087 * 22 20 19 25 25 C 1.44677 * 118.54739 * 179.73521 * 14 12 2 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.06517 * 342.42529 * 15 14 12 31 31 H 1.09009 * 109.06240 * 101.35633 * 15 14 12 32 32 H 1.09004 * 109.43943 * 160.06467 * 16 15 14 33 33 H 1.09003 * 109.43599 * 279.97059 * 16 15 14 34 34 H 1.09001 * 109.46883 * 56.04676 * 18 17 16 35 35 H 1.09003 * 109.47413 * 176.04829 * 18 17 16 36 36 H 1.09003 * 109.46908 * 296.04741 * 18 17 16 37 37 H 1.09000 * 108.50658 * 209.02625 * 19 17 16 38 38 H 1.08999 * 108.50289 * 326.49079 * 19 17 16 39 39 H 0.96708 * 117.00397 * 179.97438 * 24 22 20 40 40 H 1.09004 * 109.46547 * 210.94595 * 25 14 12 41 41 H 1.09004 * 109.46187 * 330.91600 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8550 0.9539 2.5527 16 6 1.3506 1.9097 3.6542 17 7 2.7971 1.9621 3.6395 18 6 3.2776 3.3223 3.9167 19 6 3.3573 1.0041 4.5923 20 6 3.5663 -0.3495 4.0434 21 1 4.2267 -0.2918 3.1782 22 6 4.1947 -1.2257 5.0961 23 8 3.6246 -2.2228 5.4714 24 8 5.3878 -0.8985 5.6170 25 6 2.2012 -0.9594 3.6144 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7173 1.1669 -3.4844 30 1 0.8659 1.4767 1.5963 31 1 -0.1670 0.6494 2.7790 32 1 0.9497 2.9075 3.4760 33 1 1.0111 1.5506 4.6257 34 1 2.8689 3.6653 4.8672 35 1 4.3664 3.3195 3.9692 36 1 2.9540 3.9914 3.1194 37 1 4.3154 1.3863 4.9444 38 1 2.6834 0.9309 5.4459 39 1 5.7506 -1.4911 6.2897 40 1 1.4862 -0.8627 4.4315 41 1 2.3302 -2.0132 3.3677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -103.129519 kcal Electronic energy + Delta-G solvation = -24069.807377 eV Core-core repulsion = 20564.523563 eV Total energy + Delta-G solvation = -3505.283814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76439 -39.44809 -37.82740 -36.23789 -34.47931 -34.09328 -33.04122 -30.35752 -29.04712 -26.34363 -25.64632 -24.97772 -23.70178 -22.15849 -20.85919 -20.43688 -18.47304 -18.05408 -17.01700 -16.42941 -16.27062 -15.92969 -15.25821 -15.09697 -14.75638 -14.48718 -14.11115 -13.91860 -13.49255 -13.34746 -12.90978 -12.70569 -12.62546 -12.18040 -12.01682 -11.79878 -11.59482 -11.19000 -11.12254 -10.94688 -10.92044 -10.88874 -10.62788 -10.51853 -10.30163 -10.17191 -9.89583 -8.89319 -8.56548 -8.39899 -8.19998 -8.03618 -5.97232 -3.99205 2.14388 2.81924 3.37827 3.43327 3.50664 3.74563 3.78066 3.91390 4.52120 4.59968 4.88670 4.92931 5.05370 5.20207 5.28159 5.33201 5.36423 5.40949 5.48043 5.59165 5.62391 5.82094 5.85568 5.89152 6.08752 6.14575 6.32355 6.41943 6.68610 6.89991 6.96001 6.99448 7.04545 7.25932 7.54429 7.81122 7.81959 8.02383 8.15852 8.45381 9.09241 9.30030 9.65800 11.10468 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.005247 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.868294 B = 5335.499131 C = 5990.482440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.610 5.610 15 C 0.116 3.884 16 C 0.039 3.961 17 N -0.531 5.531 18 C 0.031 3.969 19 C 0.071 3.929 20 C -0.097 4.097 21 H 0.122 0.878 22 C 0.493 3.507 23 O -0.512 6.512 24 O -0.517 6.517 25 C 0.141 3.859 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.259 0.741 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.407 0.593 40 H 0.069 0.931 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 5.680 16.942 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.536 4.536 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.421 6.421 14 N -0.344 5.344 15 C -0.008 4.008 16 C -0.090 4.090 17 N -0.254 5.254 18 C -0.117 4.117 19 C -0.058 4.058 20 C -0.118 4.118 21 H 0.140 0.860 22 C 0.334 3.666 23 O -0.399 6.399 24 O -0.329 6.329 25 C 0.016 3.984 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.266 0.734 40 H 0.087 0.913 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.323 5.133 16.069 17.028 hybrid contribution 0.329 -0.520 0.486 0.784 sum 2.652 4.613 16.555 17.389 Atomic orbital electron populations 1.22039 0.96743 1.00005 1.01482 1.18826 0.94017 0.96804 0.89243 0.92731 1.21162 1.30762 1.12585 0.89086 0.90923 1.24920 0.95214 0.95062 0.98995 1.69866 1.37388 1.23082 1.23370 0.86488 0.79475 0.79229 0.82220 1.20754 1.21367 1.19812 1.22067 0.78138 0.83953 0.84553 1.90528 1.38068 1.27120 1.86363 1.47763 1.52504 1.28546 1.05612 1.22315 0.92183 0.85515 1.00773 1.22541 0.87507 1.00498 0.98474 1.60622 1.08009 1.05609 1.51174 1.22472 1.00793 0.88790 0.99637 1.20799 1.00670 0.91673 0.92629 1.21037 1.00158 0.94154 0.96459 0.85974 1.23345 0.78353 0.84469 0.80469 1.90718 1.62842 1.27103 1.59235 1.84561 1.35981 1.56461 1.55856 1.21125 0.90873 0.97590 0.88854 0.89010 0.95210 0.95676 0.93090 0.87681 0.91941 0.89946 0.93951 0.95802 0.91308 0.90713 0.90479 0.94423 0.73429 0.91261 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.48 37.16 0.32 -2.97 16 2 C 0.03 0.79 1.81 -92.92 -0.17 0.63 16 3 H 0.06 1.41 7.41 -51.93 -0.38 1.03 16 4 C -0.50 -14.23 8.37 -34.44 -0.29 -14.52 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 7 N -0.90 -25.10 11.33 55.43 0.63 -24.48 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 12.06 7.02 -10.98 -0.08 11.99 16 13 O -0.54 -14.44 14.86 5.56 0.08 -14.36 16 14 N -0.61 -10.98 2.52 -171.82 -0.43 -11.41 16 15 C 0.12 1.69 4.77 -2.81 -0.01 1.68 16 16 C 0.04 0.45 5.52 -4.44 -0.02 0.43 16 17 N -0.53 -6.61 4.41 -247.92 -1.09 -7.71 16 18 C 0.03 0.30 9.20 60.06 0.55 0.85 16 19 C 0.07 0.84 4.17 -6.80 -0.03 0.81 16 20 C -0.10 -1.39 2.80 -93.05 -0.26 -1.65 16 21 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 22 C 0.49 6.62 7.60 36.00 0.27 6.89 16 23 O -0.51 -8.20 16.60 -18.76 -0.31 -8.51 16 24 O -0.52 -5.25 13.13 -39.24 -0.52 -5.76 16 25 C 0.14 2.30 4.21 -3.66 -0.02 2.28 16 26 H 0.09 2.29 6.08 -51.93 -0.32 1.98 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.02 0.46 4.59 -51.93 -0.24 0.22 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.11 1.73 4.90 -51.93 -0.25 1.48 16 31 H 0.06 0.82 7.55 -51.92 -0.39 0.43 16 32 H 0.08 0.80 7.63 -51.93 -0.40 0.40 16 33 H 0.04 0.44 7.14 -51.93 -0.37 0.07 16 34 H 0.02 0.20 8.13 -51.93 -0.42 -0.23 16 35 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 36 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.08 0.83 7.22 -51.93 -0.38 0.45 16 38 H 0.04 0.41 7.19 -51.93 -0.37 0.04 16 39 H 0.41 2.28 9.10 45.56 0.41 2.70 16 40 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.09 1.77 6.93 -51.93 -0.36 1.41 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -33.65 322.25 -6.69 -40.34 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.05 Total: 2.07 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.17 Total: 7.95 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.90 Total: -43.60 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.74 Total: -28.63 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.65 -6.69 -40.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.789 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds