Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 O 1.21283 * 120.00011 * 120.00264 * 12 2 1 14 14 N 1.34775 * 120.00072 * 299.99711 * 12 2 1 15 15 C 1.47779 * 118.54765 * 0.02562 * 14 12 2 16 16 C 1.54022 * 111.55907 * 221.88952 * 15 14 12 17 17 N 1.44754 * 109.68322 * 39.99419 * 16 15 14 18 18 C 1.46898 * 111.00453 * 142.14749 * 17 16 15 19 19 C 1.46258 * 110.63554 * 265.83949 * 17 16 15 20 20 C 1.47549 * 114.38044 * 87.75693 * 19 17 16 21 21 H 1.08998 * 109.42808 * 57.85676 * 20 19 17 22 22 C 1.50694 * 109.42951 * 177.75081 * 20 19 17 23 23 O 1.20836 * 120.00049 * 119.99742 * 22 20 19 24 24 O 1.34225 * 120.00140 * 300.00087 * 22 20 19 25 25 C 1.44677 * 118.54739 * 179.73521 * 14 12 2 26 26 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 27 27 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.06517 * 342.42529 * 15 14 12 31 31 H 1.09009 * 109.06240 * 101.35633 * 15 14 12 32 32 H 1.09004 * 109.43943 * 160.06467 * 16 15 14 33 33 H 1.09003 * 109.43599 * 279.97059 * 16 15 14 34 34 H 1.09001 * 109.46883 * 56.04676 * 18 17 16 35 35 H 1.09003 * 109.47413 * 176.04829 * 18 17 16 36 36 H 1.09003 * 109.46908 * 296.04741 * 18 17 16 37 37 H 1.09000 * 108.50658 * 209.02625 * 19 17 16 38 38 H 1.08999 * 108.50289 * 326.49079 * 19 17 16 39 39 H 0.96708 * 117.00397 * 179.97438 * 24 22 20 40 40 H 1.09004 * 109.46547 * 210.94595 * 25 14 12 41 41 H 1.09004 * 109.46187 * 330.91600 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 0.8550 0.9539 2.5527 16 6 1.3506 1.9097 3.6542 17 7 2.7971 1.9621 3.6395 18 6 3.2776 3.3223 3.9167 19 6 3.3573 1.0041 4.5923 20 6 3.5663 -0.3495 4.0434 21 1 4.2267 -0.2918 3.1782 22 6 4.1947 -1.2257 5.0961 23 8 3.6246 -2.2228 5.4714 24 8 5.3878 -0.8985 5.6170 25 6 2.2012 -0.9594 3.6144 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7173 1.1669 -3.4844 30 1 0.8659 1.4767 1.5963 31 1 -0.1670 0.6494 2.7790 32 1 0.9497 2.9075 3.4760 33 1 1.0111 1.5506 4.6257 34 1 2.8689 3.6653 4.8672 35 1 4.3664 3.3195 3.9692 36 1 2.9540 3.9914 3.1194 37 1 4.3154 1.3863 4.9444 38 1 2.6834 0.9309 5.4459 39 1 5.7506 -1.4911 6.2897 40 1 1.4862 -0.8627 4.4315 41 1 2.3302 -2.0132 3.3677 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -128.493803 kcal Electronic energy + Delta-G solvation = -24070.907255 eV Core-core repulsion = 20564.523563 eV Total energy + Delta-G solvation = -3506.383692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92348 -40.82820 -39.09696 -37.23115 -36.02374 -35.84387 -34.43094 -32.28847 -30.12884 -27.62835 -27.21331 -26.44157 -25.03865 -23.62926 -22.08357 -21.58008 -19.95559 -19.15332 -18.34655 -18.10724 -17.80173 -17.10905 -16.79349 -16.51247 -16.09812 -15.89052 -15.39719 -15.24380 -14.73347 -14.55804 -14.46703 -13.98099 -13.90698 -13.63310 -13.40646 -12.93687 -12.83197 -12.68827 -12.68290 -12.60470 -12.31461 -12.26589 -12.16426 -12.04038 -11.91072 -11.66021 -11.62918 -10.97302 -10.56115 -10.21794 -9.53247 -9.22791 -8.11792 -6.21038 1.07876 1.40811 1.41426 1.53280 1.72968 2.01257 2.38162 2.52175 2.99435 3.17473 3.49611 3.77517 3.98233 4.05606 4.13854 4.29263 4.35417 4.39373 4.46777 4.64773 4.67927 4.79582 4.80703 4.81718 4.84927 4.91662 4.97970 5.02844 5.09596 5.12965 5.51384 5.54193 5.76162 5.82218 6.00059 6.12533 6.19428 6.26423 6.61130 6.86574 6.91897 7.43948 7.55938 8.93879 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.005247 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.868294 B = 5335.499131 C = 5990.482440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.518 3.482 13 O -0.592 6.592 14 N -0.596 5.596 15 C 0.104 3.896 16 C 0.047 3.953 17 N -0.561 5.561 18 C 0.033 3.967 19 C 0.075 3.925 20 C -0.091 4.091 21 H 0.092 0.908 22 C 0.503 3.497 23 O -0.541 6.541 24 O -0.505 6.505 25 C 0.140 3.860 26 H 0.070 0.930 27 H 0.015 0.985 28 H 0.068 0.932 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.430 0.570 40 H 0.098 0.902 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 7.246 18.752 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.060 0.940 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.309 3.691 13 O -0.472 6.472 14 N -0.328 5.328 15 C -0.018 4.018 16 C -0.082 4.082 17 N -0.285 5.285 18 C -0.114 4.114 19 C -0.054 4.054 20 C -0.112 4.112 21 H 0.110 0.890 22 C 0.345 3.655 23 O -0.431 6.431 24 O -0.319 6.319 25 C 0.015 3.985 26 H 0.088 0.912 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.292 0.708 40 H 0.117 0.883 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.936 6.754 17.932 19.259 hybrid contribution 0.496 -0.974 -0.027 1.093 sum 2.432 5.780 17.905 18.971 Atomic orbital electron populations 1.21866 0.95085 0.99304 1.02515 1.18690 0.95270 0.95632 0.89192 0.94042 1.21296 1.31532 1.12510 0.91410 0.93892 1.25524 0.95280 0.95738 1.01136 1.69934 1.37252 1.23358 1.24174 0.85665 0.78536 0.78621 0.79452 1.20069 1.19763 1.20719 1.21735 0.77982 0.83427 0.85912 1.90496 1.40292 1.29125 1.87292 1.47639 1.51684 1.29068 1.04419 1.22597 0.92947 0.84678 1.01569 1.22493 0.87200 1.00674 0.97869 1.60514 1.08680 1.07099 1.52206 1.22472 1.00994 0.87201 1.00686 1.20755 1.01988 0.89913 0.92703 1.20869 0.98281 0.96075 0.96005 0.88990 1.23014 0.78896 0.83549 0.80004 1.90718 1.63898 1.28102 1.60378 1.84494 1.34259 1.56820 1.56309 1.21187 0.92996 0.95698 0.88595 0.91166 0.96570 0.91382 0.92637 0.89669 0.89675 0.87598 0.91800 0.93589 0.91161 0.90857 0.89079 0.92466 0.70773 0.88338 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.48 71.98 0.61 -5.33 16 2 C 0.03 1.70 1.81 -12.28 -0.02 1.68 16 3 H 0.04 2.22 7.41 -2.39 -0.02 2.20 16 4 C -0.53 -31.46 8.37 25.60 0.21 -31.25 16 5 H 0.04 2.76 6.75 -2.91 -0.02 2.74 16 6 C 0.02 1.27 5.31 84.65 0.45 1.72 16 7 N -0.91 -51.11 11.33 21.45 0.24 -50.86 16 8 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 9 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 12 C 0.52 24.83 7.02 87.66 0.62 25.45 16 13 O -0.59 -33.16 14.86 -3.04 -0.05 -33.20 16 14 N -0.60 -21.32 2.52 -815.90 -2.06 -23.38 16 15 C 0.10 2.84 4.77 86.48 0.41 3.25 16 16 C 0.05 0.91 5.52 87.05 0.48 1.39 16 17 N -0.56 -12.50 4.41 -938.30 -4.14 -16.64 16 18 C 0.03 0.55 9.20 127.69 1.18 1.72 16 19 C 0.07 1.56 4.17 84.72 0.35 1.91 16 20 C -0.09 -2.53 2.80 -12.37 -0.03 -2.57 16 21 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 22 C 0.50 12.89 7.60 71.23 0.54 13.43 16 23 O -0.54 -16.92 16.60 21.93 0.36 -16.55 16 24 O -0.51 -9.12 13.13 -51.37 -0.67 -9.79 16 25 C 0.14 4.50 4.21 87.60 0.37 4.87 16 26 H 0.07 3.53 6.08 -2.38 -0.01 3.51 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 2.45 4.59 -2.39 -0.01 2.44 16 29 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 30 H 0.09 2.70 4.90 -2.39 -0.01 2.69 16 31 H 0.09 1.96 7.55 -2.38 -0.02 1.94 16 32 H 0.11 1.60 7.63 -2.38 -0.02 1.59 16 33 H 0.06 1.01 7.14 -2.39 -0.02 0.99 16 34 H 0.05 0.56 8.13 -2.39 -0.02 0.54 16 35 H 0.07 1.11 7.83 -2.39 -0.02 1.10 16 36 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 37 H 0.09 1.67 7.22 -2.39 -0.02 1.65 16 38 H 0.06 1.00 7.19 -2.39 -0.02 0.99 16 39 H 0.43 3.69 9.10 -74.05 -0.67 3.01 16 40 H 0.10 2.58 8.10 -2.38 -0.02 2.57 16 41 H 0.06 2.31 6.93 -2.38 -0.02 2.29 16 Total: -1.00 -76.03 322.25 1.26 -74.77 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.38 Total: 11.55 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: 5.16 Total: 16.28 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.96 Total: -90.89 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -0.36 Total: -59.55 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.03 1.26 -74.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.724 kcal (2) G-P(sol) polarization free energy of solvation -76.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds