Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46778 * 2 1 4 4 C 1.50698 * 109.46769 * 119.99674 * 2 1 3 5 5 H 1.07998 * 119.99972 * 120.00217 * 4 2 1 6 6 C 1.37879 * 120.00032 * 300.00111 * 4 2 1 7 7 N 1.31513 * 120.00062 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47251 * 119.99970 * 8 6 4 11 11 H 1.48501 * 109.47274 * 239.99675 * 8 6 4 12 12 C 1.50701 * 109.47310 * 239.99936 * 2 1 3 13 13 O 1.21282 * 119.99830 * 240.00304 * 12 2 1 14 14 N 1.34776 * 120.00077 * 59.99902 * 12 2 1 15 15 C 1.47778 * 118.54649 * 0.02562 * 14 12 2 16 16 C 1.54023 * 111.55393 * 138.11333 * 15 14 12 17 17 N 1.44762 * 109.68041 * 319.99666 * 16 15 14 18 18 C 1.46899 * 111.00219 * 217.86048 * 17 16 15 19 19 C 1.46266 * 110.64096 * 94.16945 * 17 16 15 20 20 C 1.47543 * 114.37025 * 272.25186 * 19 17 16 21 21 H 1.09001 * 109.42995 * 302.13388 * 20 19 17 22 22 C 1.50708 * 109.42494 * 182.29293 * 20 19 17 23 23 O 1.20820 * 119.99847 * 239.99951 * 22 20 19 24 24 O 1.34227 * 119.99531 * 60.00596 * 22 20 19 25 25 C 1.44677 * 118.54622 * 179.97438 * 14 12 2 26 26 H 1.09001 * 109.47044 * 60.00185 * 1 2 3 27 27 H 1.08995 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47414 * 300.00657 * 1 2 3 29 29 H 0.97005 * 119.99855 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.06583 * 17.57273 * 15 14 12 31 31 H 1.09003 * 109.00311 * 258.60752 * 15 14 12 32 32 H 1.08996 * 109.43708 * 199.93113 * 16 15 14 33 33 H 1.09004 * 109.40632 * 80.03549 * 16 15 14 34 34 H 1.08996 * 109.47280 * 296.51640 * 18 17 16 35 35 H 1.09002 * 109.47071 * 56.51069 * 18 17 16 36 36 H 1.08999 * 109.47464 * 176.50907 * 18 17 16 37 37 H 1.08998 * 108.50162 * 33.51346 * 19 17 16 38 38 H 1.08991 * 108.50602 * 150.98555 * 19 17 16 39 39 H 0.96706 * 116.99599 * 180.02562 * 24 22 20 40 40 H 1.08991 * 109.46389 * 29.09171 * 25 14 12 41 41 H 1.08992 * 109.46192 * 149.07789 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3223 -1.1194 4.0080 9 1 3.1472 -2.2862 3.6039 10 1 3.1470 -0.1856 4.8161 11 1 1.1676 -1.5864 4.8166 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 0.8560 0.9542 -2.5528 16 6 1.3521 1.9092 -3.6548 17 7 2.7987 1.9606 -3.6403 18 6 3.2800 3.3205 -3.9180 19 6 3.3582 1.0020 -4.5929 20 6 3.5662 -0.3514 -4.0435 21 1 4.2267 -0.2940 -3.1783 22 6 4.1951 -1.2282 -5.0957 23 8 3.6249 -2.2251 -5.4711 24 8 5.3887 -0.9017 -5.6155 25 6 2.2068 -0.9560 -3.6143 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7088 1.1616 3.4844 30 1 0.8674 1.4773 -1.5966 31 1 -0.1657 0.6494 -2.7794 32 1 0.9519 2.9073 -3.4769 33 1 1.0117 1.5497 -4.6259 34 1 2.9813 3.6132 -4.9245 35 1 2.8487 4.0132 -3.1952 36 1 4.3669 3.3443 -3.8401 37 1 2.6843 0.9291 -5.4465 38 1 4.3166 1.3834 -4.9450 39 1 5.7518 -1.4946 -6.2878 40 1 2.3402 -2.0094 -3.3685 41 1 1.4931 -0.8614 -4.4325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -103.247923 kcal Electronic energy + Delta-G solvation = -24071.523270 eV Core-core repulsion = 20566.234322 eV Total energy + Delta-G solvation = -3505.288949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78314 -39.45282 -37.82919 -36.24464 -34.48368 -34.10815 -33.05967 -30.35590 -29.04564 -26.36007 -25.64598 -24.97839 -23.70107 -22.16444 -20.86261 -20.43502 -18.47596 -18.05368 -17.02498 -16.43761 -16.27289 -15.93727 -15.26449 -15.10337 -14.76064 -14.48327 -14.10873 -13.91439 -13.50413 -13.34840 -12.91473 -12.69672 -12.62656 -12.18111 -12.03447 -11.80554 -11.59859 -11.19097 -11.12175 -10.95527 -10.91955 -10.88869 -10.61296 -10.51945 -10.31115 -10.16136 -9.89787 -8.88221 -8.56956 -8.40278 -8.20268 -8.03701 -5.97507 -3.99326 2.14112 2.81226 3.36129 3.43558 3.52357 3.74925 3.77857 3.91243 4.52141 4.61186 4.87698 4.92791 5.06339 5.19605 5.28115 5.33147 5.36277 5.40914 5.48385 5.59136 5.61886 5.82100 5.85722 5.89238 6.08803 6.14477 6.32328 6.41742 6.68552 6.90037 6.95586 6.99384 7.04541 7.25893 7.54457 7.81006 7.81724 8.02378 8.15855 8.45278 9.09565 9.30004 9.65719 11.10216 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.005246 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.512144 B = 5336.545854 C = 5993.309333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.032 3.968 3 H 0.055 0.945 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.610 5.610 15 C 0.116 3.884 16 C 0.039 3.961 17 N -0.531 5.531 18 C 0.031 3.969 19 C 0.071 3.929 20 C -0.097 4.097 21 H 0.122 0.878 22 C 0.493 3.507 23 O -0.511 6.511 24 O -0.517 6.517 25 C 0.140 3.860 26 H 0.024 0.976 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.259 0.741 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.407 0.593 40 H 0.092 0.908 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.217 5.676 -16.952 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.073 0.927 4 C -0.535 4.535 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.313 3.687 13 O -0.421 6.421 14 N -0.344 5.344 15 C -0.008 4.008 16 C -0.091 4.091 17 N -0.254 5.254 18 C -0.117 4.117 19 C -0.058 4.058 20 C -0.118 4.118 21 H 0.140 0.860 22 C 0.334 3.666 23 O -0.399 6.399 24 O -0.328 6.328 25 C 0.015 3.985 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.266 0.734 40 H 0.110 0.890 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.334 5.120 -16.082 17.038 hybrid contribution 0.330 -0.503 -0.480 0.770 sum 2.664 4.617 -16.562 17.399 Atomic orbital electron populations 1.22038 0.96735 1.00005 1.01492 1.18831 0.94030 0.96807 0.89263 0.92734 1.21205 1.30591 1.12645 0.89066 0.90864 1.24925 0.95202 0.95090 0.99013 1.69878 1.37385 1.23172 1.23267 0.86438 0.78601 0.79813 0.82641 1.19620 1.21119 1.21135 1.22066 0.78137 0.83959 0.84550 1.90528 1.38078 1.27106 1.86358 1.47761 1.52408 1.28639 1.05583 1.22320 0.92203 0.85497 1.00761 1.22549 0.87529 1.00512 0.98478 1.60626 1.07986 1.05616 1.51197 1.22465 1.01246 0.88756 0.99204 1.20789 1.00696 0.91644 0.92625 1.20907 1.00206 0.94174 0.96514 0.85974 1.23324 0.78373 0.84457 0.80457 1.90715 1.62858 1.27115 1.59185 1.84561 1.35909 1.56460 1.55909 1.20975 0.90942 0.97684 0.88913 0.95683 0.95213 0.88989 0.93147 0.87689 0.91931 0.89942 0.93957 0.95849 0.90757 0.91232 0.94392 0.90480 0.73419 0.88953 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.48 37.16 0.31 -2.97 16 2 C 0.03 0.78 1.81 -92.92 -0.17 0.62 16 3 H 0.06 1.41 7.40 -51.93 -0.38 1.03 16 4 C -0.50 -14.20 8.37 -34.44 -0.29 -14.49 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.52 12.07 7.02 -10.98 -0.08 11.99 16 13 O -0.54 -14.45 14.86 5.56 0.08 -14.37 16 14 N -0.61 -10.98 2.54 -172.29 -0.44 -11.42 16 15 C 0.12 1.69 4.77 -2.81 -0.01 1.68 16 16 C 0.04 0.44 5.52 -4.44 -0.02 0.42 16 17 N -0.53 -6.61 4.41 -247.93 -1.09 -7.71 16 18 C 0.03 0.30 9.17 60.06 0.55 0.85 16 19 C 0.07 0.84 4.17 -6.80 -0.03 0.81 16 20 C -0.10 -1.39 2.78 -93.43 -0.26 -1.65 16 21 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 22 C 0.49 6.61 7.60 36.01 0.27 6.89 16 23 O -0.51 -8.19 16.59 -18.74 -0.31 -8.50 16 24 O -0.52 -5.24 13.13 -39.25 -0.52 -5.75 16 25 C 0.14 2.28 4.17 -4.04 -0.02 2.27 16 26 H 0.02 0.46 4.59 -51.93 -0.24 0.22 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.11 1.73 4.90 -51.93 -0.25 1.47 16 31 H 0.06 0.82 7.55 -51.93 -0.39 0.43 16 32 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 33 H 0.04 0.44 7.14 -51.93 -0.37 0.07 16 34 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.69 7.97 -51.93 -0.41 0.28 16 36 H 0.07 0.65 8.03 -51.93 -0.42 0.24 16 37 H 0.04 0.41 7.18 -51.93 -0.37 0.04 16 38 H 0.08 0.83 7.35 -51.93 -0.38 0.45 16 39 H 0.41 2.28 9.10 45.56 0.41 2.69 16 40 H 0.09 1.76 6.91 -51.93 -0.36 1.40 16 41 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -33.70 322.20 -6.70 -40.39 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.05 Total: 2.04 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.17 Total: 7.94 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.90 Total: -43.60 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.74 Total: -28.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.70 -6.70 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.853 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds