Wall clock time and date at job start Tue Mar 31 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46778 * 2 1 4 4 C 1.50698 * 109.46769 * 119.99674 * 2 1 3 5 5 H 1.07998 * 119.99972 * 120.00217 * 4 2 1 6 6 C 1.37879 * 120.00032 * 300.00111 * 4 2 1 7 7 N 1.31513 * 120.00062 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99765 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47225 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47251 * 119.99970 * 8 6 4 11 11 H 1.48501 * 109.47274 * 239.99675 * 8 6 4 12 12 C 1.50701 * 109.47310 * 239.99936 * 2 1 3 13 13 O 1.21282 * 119.99830 * 240.00304 * 12 2 1 14 14 N 1.34776 * 120.00077 * 59.99902 * 12 2 1 15 15 C 1.47778 * 118.54649 * 0.02562 * 14 12 2 16 16 C 1.54023 * 111.55393 * 138.11333 * 15 14 12 17 17 N 1.44762 * 109.68041 * 319.99666 * 16 15 14 18 18 C 1.46899 * 111.00219 * 217.86048 * 17 16 15 19 19 C 1.46266 * 110.64096 * 94.16945 * 17 16 15 20 20 C 1.47543 * 114.37025 * 272.25186 * 19 17 16 21 21 H 1.09001 * 109.42995 * 302.13388 * 20 19 17 22 22 C 1.50708 * 109.42494 * 182.29293 * 20 19 17 23 23 O 1.20820 * 119.99847 * 239.99951 * 22 20 19 24 24 O 1.34227 * 119.99531 * 60.00596 * 22 20 19 25 25 C 1.44677 * 118.54622 * 179.97438 * 14 12 2 26 26 H 1.09001 * 109.47044 * 60.00185 * 1 2 3 27 27 H 1.08995 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47414 * 300.00657 * 1 2 3 29 29 H 0.97005 * 119.99855 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.06583 * 17.57273 * 15 14 12 31 31 H 1.09003 * 109.00311 * 258.60752 * 15 14 12 32 32 H 1.08996 * 109.43708 * 199.93113 * 16 15 14 33 33 H 1.09004 * 109.40632 * 80.03549 * 16 15 14 34 34 H 1.08996 * 109.47280 * 296.51640 * 18 17 16 35 35 H 1.09002 * 109.47071 * 56.51069 * 18 17 16 36 36 H 1.08999 * 109.47464 * 176.50907 * 18 17 16 37 37 H 1.08998 * 108.50162 * 33.51346 * 19 17 16 38 38 H 1.08991 * 108.50602 * 150.98555 * 19 17 16 39 39 H 0.96706 * 116.99599 * 180.02562 * 24 22 20 40 40 H 1.08991 * 109.46389 * 29.09171 * 25 14 12 41 41 H 1.08992 * 109.46192 * 149.07789 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9435 0.8304 2.6033 8 14 2.3223 -1.1194 4.0080 9 1 3.1472 -2.2862 3.6039 10 1 3.1470 -0.1856 4.8161 11 1 1.1676 -1.5864 4.8166 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 0.8560 0.9542 -2.5528 16 6 1.3521 1.9092 -3.6548 17 7 2.7987 1.9606 -3.6403 18 6 3.2800 3.3205 -3.9180 19 6 3.3582 1.0020 -4.5929 20 6 3.5662 -0.3514 -4.0435 21 1 4.2267 -0.2940 -3.1783 22 6 4.1951 -1.2282 -5.0957 23 8 3.6249 -2.2251 -5.4711 24 8 5.3887 -0.9017 -5.6155 25 6 2.2068 -0.9560 -3.6143 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7088 1.1616 3.4844 30 1 0.8674 1.4773 -1.5966 31 1 -0.1657 0.6494 -2.7794 32 1 0.9519 2.9073 -3.4769 33 1 1.0117 1.5497 -4.6259 34 1 2.9813 3.6132 -4.9245 35 1 2.8487 4.0132 -3.1952 36 1 4.3669 3.3443 -3.8401 37 1 2.6843 0.9291 -5.4465 38 1 4.3166 1.3834 -4.9450 39 1 5.7518 -1.4946 -6.2878 40 1 2.3402 -2.0094 -3.3685 41 1 1.4931 -0.8614 -4.4325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:35 Heat of formation + Delta-G solvation = -128.675322 kcal Electronic energy + Delta-G solvation = -24072.625885 eV Core-core repulsion = 20566.234322 eV Total energy + Delta-G solvation = -3506.391563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94262 -40.83154 -39.10186 -37.23735 -36.02483 -35.85243 -34.45901 -32.28798 -30.12754 -27.63802 -27.21844 -26.44168 -25.03892 -23.63482 -22.08301 -21.58391 -19.95493 -19.15624 -18.34931 -18.11514 -17.80904 -17.11437 -16.79995 -16.51844 -16.09763 -15.89935 -15.39406 -15.23361 -14.73398 -14.57817 -14.47120 -13.97980 -13.90766 -13.63233 -13.40774 -12.93935 -12.84706 -12.68925 -12.68004 -12.60747 -12.30203 -12.27104 -12.15878 -12.04834 -11.91258 -11.66210 -11.63372 -10.96384 -10.56248 -10.21992 -9.53595 -9.22989 -8.12058 -6.21163 1.07625 1.39387 1.41339 1.54750 1.72273 2.01261 2.38203 2.52188 2.99369 3.17195 3.51067 3.76793 3.98217 4.05824 4.13759 4.29071 4.35072 4.39302 4.47538 4.64293 4.67555 4.79880 4.80759 4.81843 4.85148 4.91593 4.97848 5.02875 5.09615 5.12838 5.51147 5.54251 5.76194 5.82204 5.99998 6.12014 6.19491 6.26393 6.61095 6.86706 6.91679 7.43909 7.55846 8.93785 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019596 B = 0.005246 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.512144 B = 5336.545854 C = 5993.309333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.042 0.958 4 C -0.528 4.528 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.592 6.592 14 N -0.596 5.596 15 C 0.104 3.896 16 C 0.046 3.954 17 N -0.561 5.561 18 C 0.033 3.967 19 C 0.075 3.925 20 C -0.091 4.091 21 H 0.092 0.908 22 C 0.504 3.496 23 O -0.541 6.541 24 O -0.505 6.505 25 C 0.139 3.861 26 H 0.068 0.932 27 H 0.015 0.985 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.430 0.570 40 H 0.058 0.942 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 7.285 -18.735 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.060 0.940 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.309 3.691 13 O -0.472 6.472 14 N -0.328 5.328 15 C -0.018 4.018 16 C -0.083 4.083 17 N -0.285 5.285 18 C -0.113 4.113 19 C -0.053 4.053 20 C -0.112 4.112 21 H 0.110 0.890 22 C 0.346 3.654 23 O -0.431 6.431 24 O -0.319 6.319 25 C 0.015 3.985 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.292 0.708 40 H 0.076 0.924 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.936 6.787 -17.917 19.256 hybrid contribution 0.499 -0.971 0.026 1.092 sum 2.435 5.815 -17.891 18.969 Atomic orbital electron populations 1.21865 0.95076 0.99308 1.02528 1.18694 0.95283 0.95641 0.89196 0.94022 1.21324 1.31376 1.12538 0.91402 0.93920 1.25527 0.95260 0.95769 1.01148 1.69944 1.37238 1.23443 1.24114 0.85609 0.78372 0.78580 0.79700 1.20856 1.19849 1.19869 1.21737 0.77973 0.83433 0.85912 1.90497 1.40311 1.29120 1.87288 1.47640 1.51587 1.29169 1.04391 1.22603 0.92960 0.84655 1.01571 1.22501 0.87210 1.00709 0.97860 1.60521 1.08663 1.07101 1.52214 1.22467 1.01196 0.87193 1.00485 1.20745 1.02002 0.89890 0.92708 1.20740 0.98329 0.96102 0.96064 0.88986 1.22994 0.78916 0.83536 0.79988 1.90715 1.63915 1.28116 1.60331 1.84495 1.34185 1.56820 1.56361 1.21036 0.93054 0.95780 0.88651 0.91388 0.96572 0.91139 0.92645 0.89662 0.89675 0.87555 0.91821 0.93666 0.90608 0.91338 0.92435 0.89106 0.70761 0.92390 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.95 8.48 71.98 0.61 -5.34 16 2 C 0.03 1.69 1.81 -12.29 -0.02 1.66 16 3 H 0.04 2.23 7.40 -2.39 -0.02 2.21 16 4 C -0.53 -31.41 8.37 25.60 0.21 -31.20 16 5 H 0.04 2.75 6.75 -2.91 -0.02 2.73 16 6 C 0.02 1.26 5.30 84.66 0.45 1.70 16 7 N -0.91 -51.09 11.32 21.45 0.24 -50.84 16 8 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 9 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.52 24.85 7.02 87.66 0.62 25.47 16 13 O -0.59 -33.21 14.86 -3.04 -0.05 -33.25 16 14 N -0.60 -21.33 2.54 -817.40 -2.07 -23.40 16 15 C 0.10 2.84 4.77 86.48 0.41 3.25 16 16 C 0.05 0.90 5.52 87.05 0.48 1.38 16 17 N -0.56 -12.50 4.41 -938.30 -4.14 -16.64 16 18 C 0.03 0.55 9.17 127.69 1.17 1.72 16 19 C 0.07 1.57 4.17 84.72 0.35 1.92 16 20 C -0.09 -2.54 2.78 -12.61 -0.04 -2.57 16 21 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 22 C 0.50 12.91 7.60 71.24 0.54 13.45 16 23 O -0.54 -16.92 16.59 21.98 0.36 -16.55 16 24 O -0.50 -9.11 13.13 -51.38 -0.67 -9.79 16 25 C 0.14 4.49 4.17 87.35 0.36 4.85 16 26 H 0.07 2.45 4.59 -2.39 -0.01 2.44 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 29 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 30 H 0.09 2.70 4.90 -2.39 -0.01 2.69 16 31 H 0.09 1.96 7.55 -2.39 -0.02 1.95 16 32 H 0.11 1.60 7.53 -2.39 -0.02 1.58 16 33 H 0.06 1.01 7.14 -2.39 -0.02 0.99 16 34 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 1.21 7.97 -2.39 -0.02 1.19 16 36 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 37 H 0.06 1.01 7.18 -2.39 -0.02 0.99 16 38 H 0.09 1.67 7.35 -2.39 -0.02 1.65 16 39 H 0.43 3.68 9.10 -74.05 -0.67 3.01 16 40 H 0.06 2.29 6.91 -2.39 -0.02 2.27 16 41 H 0.10 2.58 8.09 -2.39 -0.02 2.57 16 Total: -1.00 -76.16 322.20 1.24 -74.93 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.38 Total: 11.41 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.16 Total: 16.30 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -5.97 Total: -90.88 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -0.36 Total: -59.60 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -76.16 1.24 -74.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.749 kcal (2) G-P(sol) polarization free energy of solvation -76.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds