Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47625 * 2 1 4 4 C 1.50696 * 109.47385 * 120.00348 * 2 1 3 5 5 H 1.07998 * 120.00488 * 114.19719 * 4 2 1 6 6 C 1.37880 * 119.99675 * 294.19433 * 4 2 1 7 7 N 1.31514 * 120.00034 * 359.45355 * 6 4 2 8 8 Si 1.86802 * 120.00008 * 179.45734 * 6 4 2 9 9 H 1.48497 * 109.47001 * 265.01398 * 8 6 4 10 10 H 1.48504 * 109.46856 * 145.01368 * 8 6 4 11 11 H 1.48499 * 109.47341 * 25.01580 * 8 6 4 12 12 C 1.50702 * 109.46878 * 240.00130 * 2 1 3 13 13 O 1.21288 * 119.99951 * 245.78089 * 12 2 1 14 14 N 1.34770 * 120.00277 * 65.78392 * 12 2 1 15 15 C 1.47786 * 118.54807 * 3.85104 * 14 12 2 16 16 C 1.54022 * 111.55758 * 221.89391 * 15 14 12 17 17 N 1.44763 * 109.68557 * 39.99553 * 16 15 14 18 18 C 1.46898 * 111.00408 * 142.14521 * 17 16 15 19 19 C 1.46261 * 110.62742 * 265.83934 * 17 16 15 20 20 C 1.47539 * 114.37984 * 87.75827 * 19 17 16 21 21 H 1.08999 * 109.43235 * 57.85319 * 20 19 17 22 22 C 1.50705 * 109.42648 * 177.74618 * 20 19 17 23 23 O 1.20830 * 120.00141 * 119.99983 * 22 20 19 24 24 O 1.34229 * 119.99920 * 299.99761 * 22 20 19 25 25 C 1.44674 * 118.55054 * 183.58632 * 14 12 2 26 26 H 1.08999 * 109.47518 * 184.28257 * 1 2 3 27 27 H 1.09006 * 109.46836 * 304.28173 * 1 2 3 28 28 H 1.09003 * 109.47156 * 64.27652 * 1 2 3 29 29 H 0.97004 * 120.00259 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.05922 * 342.42717 * 15 14 12 31 31 H 1.09001 * 109.06224 * 101.35381 * 15 14 12 32 32 H 1.09006 * 109.43589 * 160.06013 * 16 15 14 33 33 H 1.09005 * 109.43672 * 279.96795 * 16 15 14 34 34 H 1.09004 * 109.46693 * 56.04419 * 18 17 16 35 35 H 1.08993 * 109.46678 * 176.04750 * 18 17 16 36 36 H 1.08999 * 109.46761 * 296.04502 * 18 17 16 37 37 H 1.09010 * 108.49934 * 209.02508 * 19 17 16 38 38 H 1.08995 * 108.50618 * 326.48646 * 19 17 16 39 39 H 0.96703 * 117.00292 * 180.02562 * 24 22 20 40 40 H 1.09004 * 109.46587 * 210.94056 * 25 14 12 41 41 H 1.09002 * 109.46488 * 330.90991 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5738 -1.6399 1.1341 6 6 1.8007 -0.1738 2.4791 7 7 1.1508 0.9636 2.5958 8 14 2.4102 -1.0621 4.0052 9 1 1.3194 -1.9062 4.5553 10 1 2.8272 -0.0658 5.0245 11 1 3.5686 -1.9202 3.6490 12 6 2.0322 -0.7104 -1.2305 13 8 2.6406 -1.7541 -1.1223 14 7 1.8055 -0.1860 -2.4511 15 6 1.1373 1.1290 -2.5419 16 6 0.0879 1.1541 -3.6690 17 7 -0.6303 -0.1026 -3.6946 18 6 -2.0509 0.1089 -4.0028 19 6 -0.0186 -1.0262 -4.6496 20 6 1.0695 -1.8499 -4.0888 21 1 0.6909 -2.4236 -3.2428 22 6 1.5794 -2.7944 -5.1467 23 8 2.7361 -2.7460 -5.4930 24 8 0.7488 -3.6893 -5.7043 25 6 2.2321 -0.9326 -3.6146 26 1 -0.3634 -1.0248 0.0767 27 1 -0.3633 0.5789 0.8492 28 1 -0.3633 0.4460 -0.9258 29 1 0.9875 1.3410 3.4744 30 1 0.6460 1.3448 -1.5931 31 1 1.8867 1.8965 -2.7359 32 1 -0.6140 1.9693 -3.4931 33 1 0.5871 1.3055 -4.6261 34 1 -2.1417 0.6474 -4.9462 35 1 -2.5523 -0.8553 -4.0850 36 1 -2.5126 0.6918 -3.2058 37 1 -0.7932 -1.6907 -5.0328 38 1 0.3797 -0.4482 -5.4834 39 1 1.1217 -4.2741 -6.3782 40 1 2.4984 -0.2401 -4.4131 41 1 3.0992 -1.5412 -3.3577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -103.508311 kcal Electronic energy + Delta-G solvation = -24179.461912 eV Core-core repulsion = 20674.161672 eV Total energy + Delta-G solvation = -3505.300240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76854 -39.45004 -37.80603 -36.24102 -34.45843 -34.04625 -33.02474 -30.39891 -29.03618 -26.37102 -25.59340 -24.99488 -23.62941 -22.13061 -20.91171 -20.48792 -18.38490 -18.03313 -17.02619 -16.51161 -16.21230 -15.92072 -15.24330 -15.05552 -14.68091 -14.59945 -14.11051 -13.94810 -13.50453 -13.31193 -12.93823 -12.62852 -12.56554 -12.27871 -11.99070 -11.67833 -11.60343 -11.47558 -11.03585 -10.97638 -10.92240 -10.75342 -10.65140 -10.53347 -10.24849 -10.13695 -9.88222 -8.88043 -8.53235 -8.40268 -8.22540 -8.00447 -5.98235 -3.98281 2.14192 2.81620 3.37595 3.43671 3.51509 3.74857 3.77875 3.92487 4.52672 4.60104 4.88967 4.93493 5.06089 5.20748 5.28527 5.33629 5.37512 5.41159 5.48610 5.59669 5.62886 5.82478 5.84948 5.90406 6.09141 6.14738 6.33524 6.41955 6.76222 6.96365 6.97455 7.03033 7.06353 7.25220 7.53733 7.80062 7.81704 8.03289 8.11071 8.45863 9.10481 9.30383 9.66366 11.11500 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.005336 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.585142 B = 5245.882332 C = 6013.315299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.610 5.610 15 C 0.102 3.898 16 C 0.042 3.958 17 N -0.529 5.529 18 C 0.031 3.969 19 C 0.071 3.929 20 C -0.096 4.096 21 H 0.122 0.878 22 C 0.492 3.508 23 O -0.511 6.511 24 O -0.517 6.517 25 C 0.140 3.860 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.114 0.886 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.407 0.593 40 H 0.069 0.931 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 0.456 -17.120 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.537 4.537 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.421 6.421 14 N -0.344 5.344 15 C -0.021 4.021 16 C -0.087 4.087 17 N -0.252 5.252 18 C -0.117 4.117 19 C -0.058 4.058 20 C -0.118 4.118 21 H 0.139 0.861 22 C 0.333 3.667 23 O -0.399 6.399 24 O -0.329 6.329 25 C 0.015 3.985 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.266 0.734 40 H 0.087 0.913 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.074 0.108 -16.246 17.345 hybrid contribution 0.392 -0.479 -0.474 0.779 sum -5.683 -0.370 -16.720 17.663 Atomic orbital electron populations 1.21852 0.96302 1.00521 1.00258 1.18849 0.94135 0.96828 0.89256 0.92994 1.21161 1.34833 1.08397 0.89324 0.90957 1.24926 0.95273 0.94957 0.98988 1.69915 1.41653 1.18558 1.23580 0.86493 0.79223 0.79381 0.82454 1.20810 1.21358 1.19755 1.22073 0.76988 0.85072 0.84590 1.90529 1.40760 1.24429 1.86356 1.47746 1.60610 1.20441 1.05599 1.22384 0.94044 0.84108 1.01562 1.22466 0.96596 0.91298 0.98323 1.60618 1.02378 1.11723 1.50476 1.22467 0.87815 1.01867 0.99518 1.20795 0.96503 0.95857 0.92602 1.21025 0.99069 0.95512 0.96146 0.86052 1.23353 0.83776 0.79073 0.80470 1.90718 1.19105 1.69465 1.60583 1.84561 1.46216 1.47224 1.54868 1.21114 0.94766 0.93990 0.88673 0.94891 0.90529 0.94653 0.93118 0.86788 0.92325 0.89981 0.93976 0.95838 0.91330 0.90716 0.90498 0.94441 0.73433 0.91282 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.47 37.15 0.31 -2.65 16 2 C 0.03 0.75 1.67 -92.93 -0.16 0.60 16 3 H 0.05 1.33 7.57 -51.93 -0.39 0.94 16 4 C -0.50 -14.25 8.30 -34.44 -0.29 -14.54 16 5 H 0.07 2.20 6.77 -52.49 -0.36 1.85 16 6 C 0.06 1.65 5.33 -17.82 -0.09 1.56 16 7 N -0.90 -25.22 11.82 55.43 0.66 -24.56 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 12.03 6.94 -10.99 -0.08 11.96 16 13 O -0.54 -14.45 14.86 5.55 0.08 -14.36 16 14 N -0.61 -10.95 2.52 -171.85 -0.43 -11.38 16 15 C 0.10 1.50 5.56 -2.80 -0.02 1.48 16 16 C 0.04 0.48 5.52 -4.44 -0.02 0.46 16 17 N -0.53 -6.42 4.41 -247.92 -1.09 -7.52 16 18 C 0.03 0.29 9.20 60.06 0.55 0.85 16 19 C 0.07 0.83 4.17 -6.81 -0.03 0.80 16 20 C -0.10 -1.37 2.80 -93.07 -0.26 -1.63 16 21 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 22 C 0.49 6.58 7.60 36.01 0.27 6.85 16 23 O -0.51 -8.18 16.60 -18.75 -0.31 -8.50 16 24 O -0.52 -5.21 13.13 -39.26 -0.52 -5.73 16 25 C 0.14 2.27 4.24 -3.69 -0.02 2.26 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.88 6.67 -51.93 -0.35 1.53 16 28 H 0.03 0.67 5.35 -51.93 -0.28 0.39 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.11 1.87 3.81 -51.93 -0.20 1.67 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.78 7.63 -51.93 -0.40 0.39 16 33 H 0.04 0.44 7.14 -51.93 -0.37 0.07 16 34 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 35 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 36 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.08 0.81 7.22 -51.92 -0.38 0.44 16 38 H 0.04 0.41 7.18 -51.93 -0.37 0.03 16 39 H 0.41 2.27 9.10 45.56 0.41 2.68 16 40 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.09 1.78 6.88 -51.93 -0.36 1.43 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -33.72 324.25 -6.67 -40.39 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.10 Total: 1.76 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 0.18 Total: 7.99 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.87 Total: -43.46 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.74 Total: -28.59 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.72 -6.67 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.117 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds