Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47625 * 2 1 4 4 C 1.50696 * 109.47385 * 120.00348 * 2 1 3 5 5 H 1.07998 * 120.00488 * 114.19719 * 4 2 1 6 6 C 1.37880 * 119.99675 * 294.19433 * 4 2 1 7 7 N 1.31514 * 120.00034 * 359.45355 * 6 4 2 8 8 Si 1.86802 * 120.00008 * 179.45734 * 6 4 2 9 9 H 1.48497 * 109.47001 * 265.01398 * 8 6 4 10 10 H 1.48504 * 109.46856 * 145.01368 * 8 6 4 11 11 H 1.48499 * 109.47341 * 25.01580 * 8 6 4 12 12 C 1.50702 * 109.46878 * 240.00130 * 2 1 3 13 13 O 1.21288 * 119.99951 * 245.78089 * 12 2 1 14 14 N 1.34770 * 120.00277 * 65.78392 * 12 2 1 15 15 C 1.47786 * 118.54807 * 3.85104 * 14 12 2 16 16 C 1.54022 * 111.55758 * 221.89391 * 15 14 12 17 17 N 1.44763 * 109.68557 * 39.99553 * 16 15 14 18 18 C 1.46898 * 111.00408 * 142.14521 * 17 16 15 19 19 C 1.46261 * 110.62742 * 265.83934 * 17 16 15 20 20 C 1.47539 * 114.37984 * 87.75827 * 19 17 16 21 21 H 1.08999 * 109.43235 * 57.85319 * 20 19 17 22 22 C 1.50705 * 109.42648 * 177.74618 * 20 19 17 23 23 O 1.20830 * 120.00141 * 119.99983 * 22 20 19 24 24 O 1.34229 * 119.99920 * 299.99761 * 22 20 19 25 25 C 1.44674 * 118.55054 * 183.58632 * 14 12 2 26 26 H 1.08999 * 109.47518 * 184.28257 * 1 2 3 27 27 H 1.09006 * 109.46836 * 304.28173 * 1 2 3 28 28 H 1.09003 * 109.47156 * 64.27652 * 1 2 3 29 29 H 0.97004 * 120.00259 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.05922 * 342.42717 * 15 14 12 31 31 H 1.09001 * 109.06224 * 101.35381 * 15 14 12 32 32 H 1.09006 * 109.43589 * 160.06013 * 16 15 14 33 33 H 1.09005 * 109.43672 * 279.96795 * 16 15 14 34 34 H 1.09004 * 109.46693 * 56.04419 * 18 17 16 35 35 H 1.08993 * 109.46678 * 176.04750 * 18 17 16 36 36 H 1.08999 * 109.46761 * 296.04502 * 18 17 16 37 37 H 1.09010 * 108.49934 * 209.02508 * 19 17 16 38 38 H 1.08995 * 108.50618 * 326.48646 * 19 17 16 39 39 H 0.96703 * 117.00292 * 180.02562 * 24 22 20 40 40 H 1.09004 * 109.46587 * 210.94056 * 25 14 12 41 41 H 1.09002 * 109.46488 * 330.90991 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5738 -1.6399 1.1341 6 6 1.8007 -0.1738 2.4791 7 7 1.1508 0.9636 2.5958 8 14 2.4102 -1.0621 4.0052 9 1 1.3194 -1.9062 4.5553 10 1 2.8272 -0.0658 5.0245 11 1 3.5686 -1.9202 3.6490 12 6 2.0322 -0.7104 -1.2305 13 8 2.6406 -1.7541 -1.1223 14 7 1.8055 -0.1860 -2.4511 15 6 1.1373 1.1290 -2.5419 16 6 0.0879 1.1541 -3.6690 17 7 -0.6303 -0.1026 -3.6946 18 6 -2.0509 0.1089 -4.0028 19 6 -0.0186 -1.0262 -4.6496 20 6 1.0695 -1.8499 -4.0888 21 1 0.6909 -2.4236 -3.2428 22 6 1.5794 -2.7944 -5.1467 23 8 2.7361 -2.7460 -5.4930 24 8 0.7488 -3.6893 -5.7043 25 6 2.2321 -0.9326 -3.6146 26 1 -0.3634 -1.0248 0.0767 27 1 -0.3633 0.5789 0.8492 28 1 -0.3633 0.4460 -0.9258 29 1 0.9875 1.3410 3.4744 30 1 0.6460 1.3448 -1.5931 31 1 1.8867 1.8965 -2.7359 32 1 -0.6140 1.9693 -3.4931 33 1 0.5871 1.3055 -4.6261 34 1 -2.1417 0.6474 -4.9462 35 1 -2.5523 -0.8553 -4.0850 36 1 -2.5126 0.6918 -3.2058 37 1 -0.7932 -1.6907 -5.0328 38 1 0.3797 -0.4482 -5.4834 39 1 1.1217 -4.2741 -6.3782 40 1 2.4984 -0.2401 -4.4131 41 1 3.0992 -1.5412 -3.3577 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -128.850968 kcal Electronic energy + Delta-G solvation = -24180.560852 eV Core-core repulsion = 20674.161672 eV Total energy + Delta-G solvation = -3506.399180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92178 -40.82286 -39.07467 -37.22733 -35.93555 -35.84808 -34.41929 -32.34150 -30.10516 -27.61165 -27.19136 -26.46938 -24.90680 -23.66118 -22.14162 -21.57397 -19.84764 -19.14436 -18.37431 -18.00153 -17.91814 -17.07554 -16.80920 -16.46728 -15.97920 -15.88289 -15.65305 -15.08689 -14.79949 -14.54099 -14.27112 -14.20570 -13.84942 -13.58826 -13.32636 -12.93455 -12.81339 -12.75142 -12.63892 -12.59790 -12.44912 -12.24492 -12.17369 -11.96489 -11.85038 -11.62661 -11.60892 -10.96994 -10.54218 -10.23685 -9.50737 -9.20813 -8.13704 -6.20600 1.08513 1.40439 1.41333 1.53692 1.72706 2.02004 2.38638 2.52426 3.01084 3.18056 3.50304 3.78523 3.99947 4.06596 4.15418 4.30666 4.37315 4.39979 4.48871 4.65742 4.70004 4.79024 4.83320 4.84261 4.86450 4.91483 4.97330 5.06605 5.16456 5.24547 5.51945 5.53336 5.76114 5.81307 5.98123 6.14287 6.20125 6.25084 6.61651 6.87452 6.92333 7.44029 7.56185 8.94441 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020409 B = 0.005336 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.585142 B = 5245.882332 C = 6013.315299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.031 3.969 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.282 1.282 12 C 0.518 3.482 13 O -0.592 6.592 14 N -0.596 5.596 15 C 0.093 3.907 16 C 0.050 3.950 17 N -0.556 5.556 18 C 0.033 3.967 19 C 0.075 3.925 20 C -0.089 4.089 21 H 0.093 0.907 22 C 0.503 3.497 23 O -0.542 6.542 24 O -0.505 6.505 25 C 0.139 3.861 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.264 0.736 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.430 0.570 40 H 0.097 0.903 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.027 1.357 -18.895 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.010 3.990 3 H 0.060 0.940 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.208 1.208 12 C 0.309 3.691 13 O -0.472 6.472 14 N -0.328 5.328 15 C -0.029 4.029 16 C -0.079 4.079 17 N -0.280 5.280 18 C -0.114 4.114 19 C -0.054 4.054 20 C -0.111 4.111 21 H 0.112 0.888 22 C 0.345 3.655 23 O -0.432 6.432 24 O -0.318 6.318 25 C 0.014 3.986 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.292 0.708 40 H 0.115 0.885 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.623 1.035 -18.074 19.643 hybrid contribution 0.848 -0.764 0.023 1.142 sum -6.775 0.270 -18.052 19.283 Atomic orbital electron populations 1.21626 0.94634 0.99255 1.01309 1.18735 0.95363 0.95765 0.89181 0.94038 1.21294 1.35742 1.08074 0.91629 0.93923 1.25528 0.95300 0.95681 1.01153 1.69973 1.41555 1.18949 1.24408 0.85663 0.78523 0.78589 0.79583 1.19930 1.19853 1.20772 1.21741 0.76889 0.84489 0.85933 1.90499 1.43049 1.26405 1.87277 1.47628 1.59446 1.21285 1.04438 1.22660 0.95454 0.82431 1.02379 1.22429 0.96101 0.91875 0.97515 1.60514 1.03877 1.12187 1.51442 1.22476 0.85946 1.02379 1.00562 1.20751 0.95937 0.96032 0.92633 1.20851 0.98864 0.95587 0.95790 0.88848 1.23042 0.83287 0.79136 0.80051 1.90719 1.20295 1.70436 1.61739 1.84494 1.45324 1.46753 1.55278 1.21168 0.94634 0.94420 0.88345 0.96624 0.92543 0.90904 0.92649 0.88747 0.90428 0.87517 0.91975 0.93733 0.91127 0.90693 0.88999 0.92605 0.70794 0.88533 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.05 8.47 71.98 0.61 -4.44 16 2 C 0.03 1.57 1.67 -12.29 -0.02 1.55 16 3 H 0.04 2.19 7.57 -2.38 -0.02 2.17 16 4 C -0.53 -31.41 8.30 25.60 0.21 -31.20 16 5 H 0.04 2.74 6.77 -2.91 -0.02 2.72 16 6 C 0.02 1.29 5.33 84.66 0.45 1.74 16 7 N -0.91 -51.39 11.82 21.45 0.25 -51.14 16 8 Si 0.95 45.83 29.54 68.60 2.03 47.85 16 9 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 12 C 0.52 24.78 6.94 87.66 0.61 25.39 16 13 O -0.59 -33.16 14.86 -3.06 -0.05 -33.21 16 14 N -0.60 -21.31 2.52 -816.00 -2.06 -23.37 16 15 C 0.09 2.54 5.56 86.48 0.48 3.02 16 16 C 0.05 0.95 5.52 87.05 0.48 1.43 16 17 N -0.56 -11.80 4.41 -938.29 -4.14 -15.94 16 18 C 0.03 0.51 9.20 127.69 1.18 1.69 16 19 C 0.07 1.52 4.17 84.72 0.35 1.87 16 20 C -0.09 -2.45 2.80 -12.38 -0.03 -2.49 16 21 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 22 C 0.50 12.77 7.60 71.24 0.54 13.31 16 23 O -0.54 -16.95 16.60 21.95 0.36 -16.59 16 24 O -0.50 -8.97 13.13 -51.41 -0.68 -9.64 16 25 C 0.14 4.47 4.24 87.58 0.37 4.84 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 2.79 6.67 -2.38 -0.02 2.78 16 28 H 0.07 2.72 5.35 -2.39 -0.01 2.71 16 29 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 30 H 0.09 2.98 3.81 -2.39 -0.01 2.97 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.56 7.63 -2.38 -0.02 1.54 16 33 H 0.06 0.98 7.14 -2.38 -0.02 0.96 16 34 H 0.04 0.51 8.13 -2.38 -0.02 0.49 16 35 H 0.07 1.05 7.83 -2.39 -0.02 1.03 16 36 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 37 H 0.09 1.62 7.22 -2.38 -0.02 1.60 16 38 H 0.06 0.96 7.18 -2.39 -0.02 0.94 16 39 H 0.43 3.61 9.10 -74.05 -0.67 2.94 16 40 H 0.10 2.57 8.10 -2.38 -0.02 2.55 16 41 H 0.06 2.30 6.88 -2.39 -0.02 2.29 16 Total: -1.00 -75.97 324.25 1.33 -74.64 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.38 Total: 10.69 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 5.23 Total: 16.71 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -5.95 Total: -90.45 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -0.36 Total: -59.44 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.97 1.33 -74.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.214 kcal (2) G-P(sol) polarization free energy of solvation -75.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds