Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47598 * 2 1 4 4 C 1.50706 * 109.46748 * 240.00268 * 2 1 3 5 5 H 1.08004 * 119.99605 * 240.00173 * 4 2 1 6 6 C 1.37872 * 120.00250 * 60.00205 * 4 2 1 7 7 N 1.31519 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00290 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47161 * 89.99543 * 8 6 4 10 10 H 1.48498 * 109.47575 * 210.00058 * 8 6 4 11 11 H 1.48504 * 109.46713 * 330.00172 * 8 6 4 12 12 C 1.50704 * 109.47255 * 120.00406 * 2 1 3 13 13 O 1.21282 * 120.00045 * 107.73101 * 12 2 1 14 14 N 1.34773 * 119.99670 * 287.73013 * 12 2 1 15 15 C 1.47781 * 118.54857 * 353.40039 * 14 12 2 16 16 C 1.54037 * 111.55026 * 138.11585 * 15 14 12 17 17 N 1.44760 * 109.68673 * 320.00432 * 16 15 14 18 18 C 1.46893 * 111.00120 * 217.86466 * 17 16 15 19 19 C 1.46261 * 110.64403 * 94.15987 * 17 16 15 20 20 C 1.47603 * 114.38122 * 272.26900 * 19 17 16 21 21 H 1.09001 * 109.42182 * 302.13206 * 20 19 17 22 22 C 1.50702 * 109.44433 * 182.28770 * 20 19 17 23 23 O 1.20821 * 120.00065 * 239.73692 * 22 20 19 24 24 O 1.34230 * 119.99760 * 59.73169 * 22 20 19 25 25 C 1.44679 * 118.54705 * 173.42445 * 14 12 2 26 26 H 1.08994 * 109.47097 * 174.29044 * 1 2 3 27 27 H 1.09004 * 109.46560 * 294.29561 * 1 2 3 28 28 H 1.08999 * 109.46536 * 54.28930 * 1 2 3 29 29 H 0.96990 * 119.99876 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.06621 * 258.64917 * 15 14 12 31 31 H 1.08996 * 109.06345 * 17.65473 * 15 14 12 32 32 H 1.08994 * 109.43457 * 80.07603 * 16 15 14 33 33 H 1.09000 * 109.43456 * 199.93937 * 16 15 14 34 34 H 1.08996 * 109.47329 * 56.04519 * 18 17 16 35 35 H 1.09001 * 109.47249 * 176.04452 * 18 17 16 36 36 H 1.08996 * 109.47029 * 296.04404 * 18 17 16 37 37 H 1.09000 * 108.50300 * 33.52361 * 19 17 16 38 38 H 1.09000 * 108.50538 * 150.98809 * 19 17 16 39 39 H 0.96701 * 116.99765 * 180.02562 * 24 22 20 40 40 H 1.09003 * 109.45859 * 29.09301 * 25 14 12 41 41 H 1.08996 * 109.46398 * 149.06711 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.3446 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 6 2.0324 -0.7105 1.2304 13 8 2.5361 -1.8094 1.1329 14 7 1.9219 -0.1246 2.4391 15 6 1.4406 1.2710 2.5061 16 6 0.4449 1.4711 3.6643 17 7 -0.4344 0.3248 3.7551 18 6 -1.8017 0.7361 4.1002 19 6 0.0808 -0.6452 4.7210 20 6 1.0281 -1.6251 4.1543 21 1 0.5459 -2.1664 3.3403 22 6 1.4431 -2.5996 5.2263 23 8 2.6076 -2.7022 5.5315 24 8 0.5189 -3.3534 5.8422 25 6 2.2802 -0.8897 3.6136 26 1 -0.3633 -1.0225 -0.1022 27 1 -0.3632 0.4229 0.9367 28 1 -0.3632 0.5999 -0.8345 29 1 0.7088 1.1614 -3.4843 30 1 2.2928 1.9350 2.6506 31 1 0.9481 1.5232 1.5671 32 1 0.9939 1.5821 4.5994 33 1 -0.1466 2.3685 3.4831 34 1 -2.1574 1.4635 3.3706 35 1 -2.4561 -0.1355 4.0931 36 1 -1.8061 1.1856 5.0932 37 1 0.5828 -0.1025 5.5220 38 1 -0.7619 -1.1870 5.1503 39 1 0.8330 -3.9637 6.5234 40 1 3.0456 -1.6203 3.3515 41 1 2.6665 -0.2183 4.3805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -107.598644 kcal Electronic energy + Delta-G solvation = -24175.223828 eV Core-core repulsion = 20669.746218 eV Total energy + Delta-G solvation = -3505.477610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77730 -39.43397 -37.81172 -36.24726 -34.46899 -33.99310 -33.06903 -30.33060 -29.02201 -26.38873 -25.57172 -25.03182 -23.60035 -22.12421 -20.95168 -20.46029 -18.35474 -18.01095 -17.03295 -16.51827 -16.23278 -15.93585 -15.23786 -15.05502 -14.67778 -14.60317 -14.10815 -13.95717 -13.50912 -13.25813 -12.87183 -12.62799 -12.56372 -12.30214 -11.98627 -11.64426 -11.60513 -11.43194 -11.03819 -10.95044 -10.90821 -10.75950 -10.60290 -10.53807 -10.39894 -10.16237 -9.89969 -8.86320 -8.55773 -8.40690 -8.21251 -7.99863 -5.96793 -3.98478 2.13706 2.80834 3.38011 3.43494 3.50506 3.74368 3.77730 3.92157 4.52366 4.61083 4.87898 4.93177 5.07146 5.20121 5.28466 5.33850 5.37069 5.41037 5.49113 5.59634 5.62420 5.83275 5.85294 5.89941 6.09877 6.15993 6.33773 6.41685 6.81578 6.96301 7.01876 7.04296 7.09428 7.26485 7.56320 7.81195 7.85352 8.03376 8.15634 8.45954 9.08866 9.29983 9.66231 11.11088 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.005328 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.755604 B = 5254.464491 C = 6018.442119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.499 4.499 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.522 3.478 13 O -0.545 6.545 14 N -0.611 5.611 15 C 0.111 3.889 16 C 0.042 3.958 17 N -0.529 5.529 18 C 0.031 3.969 19 C 0.071 3.929 20 C -0.096 4.096 21 H 0.121 0.879 22 C 0.493 3.507 23 O -0.511 6.511 24 O -0.517 6.517 25 C 0.139 3.861 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.407 0.593 40 H 0.093 0.907 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.478 1.926 17.257 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.538 4.538 5 H 0.089 0.911 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.314 3.686 13 O -0.421 6.421 14 N -0.345 5.345 15 C -0.013 4.013 16 C -0.087 4.087 17 N -0.252 5.252 18 C -0.116 4.116 19 C -0.057 4.057 20 C -0.118 4.118 21 H 0.139 0.861 22 C 0.333 3.667 23 O -0.398 6.398 24 O -0.328 6.328 25 C 0.014 3.986 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.266 0.734 40 H 0.112 0.888 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.108 1.492 16.377 17.220 hybrid contribution 0.411 -0.482 0.476 0.792 sum -4.697 1.010 16.853 17.525 Atomic orbital electron populations 1.21739 0.95839 1.00767 1.00382 1.18856 0.94470 0.96451 0.89173 0.93544 1.21162 1.30881 1.12548 0.89192 0.91088 1.24915 0.95180 0.95059 0.98965 1.69885 1.37283 1.23119 1.23350 0.86495 0.79439 0.79270 0.82246 1.20734 1.21376 1.19844 1.22082 0.75877 0.86073 0.84607 1.90527 1.43647 1.21749 1.86147 1.47740 1.67453 1.13490 1.05806 1.22187 0.96088 0.82204 1.00773 1.22477 0.95023 0.92958 0.98284 1.60606 1.02348 1.13156 1.49077 1.22459 0.88993 1.01227 0.98953 1.20794 0.97929 0.94485 0.92522 1.20936 1.00408 0.94739 0.95685 0.86086 1.23327 0.83419 0.79304 0.80600 1.90717 1.19951 1.66376 1.62795 1.84560 1.43233 1.52333 1.52723 1.20997 0.93778 0.95610 0.88243 0.95108 0.95232 0.89645 0.93112 0.92233 0.87593 0.93979 0.89970 0.90752 0.91247 0.95895 0.94411 0.90489 0.73417 0.88825 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.42 37.16 0.31 -2.68 16 2 C 0.03 0.78 1.76 -92.92 -0.16 0.62 16 3 H 0.05 1.17 7.06 -51.93 -0.37 0.81 16 4 C -0.50 -14.29 8.36 -34.44 -0.29 -14.58 16 5 H 0.07 2.16 6.82 -52.48 -0.36 1.80 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.11 11.38 55.43 0.63 -24.48 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 12.08 6.84 -10.99 -0.08 12.01 16 13 O -0.54 -14.48 14.92 5.56 0.08 -14.40 16 14 N -0.61 -10.99 2.53 -172.21 -0.44 -11.43 16 15 C 0.11 1.63 5.66 -2.80 -0.02 1.61 16 16 C 0.04 0.48 5.52 -4.43 -0.02 0.45 16 17 N -0.53 -6.44 4.41 -247.89 -1.09 -7.54 16 18 C 0.03 0.30 9.17 60.06 0.55 0.85 16 19 C 0.07 0.83 4.17 -6.78 -0.03 0.80 16 20 C -0.10 -1.37 2.79 -93.35 -0.26 -1.63 16 21 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 22 C 0.49 6.57 7.60 36.01 0.27 6.84 16 23 O -0.51 -8.17 16.59 -18.75 -0.31 -8.48 16 24 O -0.52 -5.20 13.13 -39.26 -0.52 -5.71 16 25 C 0.14 2.26 4.23 -3.99 -0.02 2.24 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.58 6.33 -51.93 -0.33 0.25 16 28 H 0.08 2.14 6.24 -51.93 -0.32 1.82 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.11 1.74 4.33 -51.93 -0.22 1.52 16 32 H 0.04 0.43 7.14 -51.93 -0.37 0.06 16 33 H 0.08 0.79 7.52 -51.93 -0.39 0.39 16 34 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 35 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 36 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.04 0.41 7.18 -51.93 -0.37 0.03 16 38 H 0.08 0.82 7.35 -51.93 -0.38 0.43 16 39 H 0.41 2.26 9.10 45.56 0.41 2.67 16 40 H 0.09 1.79 6.83 -51.93 -0.35 1.44 16 41 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -33.71 324.54 -6.74 -40.45 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.13 Total: 1.57 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 0.17 Total: 8.10 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.90 Total: -43.44 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.74 Total: -28.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.71 -6.74 -40.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.147 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds