Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47598 * 2 1 4 4 C 1.50706 * 109.46748 * 240.00268 * 2 1 3 5 5 H 1.08004 * 119.99605 * 240.00173 * 4 2 1 6 6 C 1.37872 * 120.00250 * 60.00205 * 4 2 1 7 7 N 1.31519 * 120.00037 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00290 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47161 * 89.99543 * 8 6 4 10 10 H 1.48498 * 109.47575 * 210.00058 * 8 6 4 11 11 H 1.48504 * 109.46713 * 330.00172 * 8 6 4 12 12 C 1.50704 * 109.47255 * 120.00406 * 2 1 3 13 13 O 1.21282 * 120.00045 * 107.73101 * 12 2 1 14 14 N 1.34773 * 119.99670 * 287.73013 * 12 2 1 15 15 C 1.47781 * 118.54857 * 353.40039 * 14 12 2 16 16 C 1.54037 * 111.55026 * 138.11585 * 15 14 12 17 17 N 1.44760 * 109.68673 * 320.00432 * 16 15 14 18 18 C 1.46893 * 111.00120 * 217.86466 * 17 16 15 19 19 C 1.46261 * 110.64403 * 94.15987 * 17 16 15 20 20 C 1.47603 * 114.38122 * 272.26900 * 19 17 16 21 21 H 1.09001 * 109.42182 * 302.13206 * 20 19 17 22 22 C 1.50702 * 109.44433 * 182.28770 * 20 19 17 23 23 O 1.20821 * 120.00065 * 239.73692 * 22 20 19 24 24 O 1.34230 * 119.99760 * 59.73169 * 22 20 19 25 25 C 1.44679 * 118.54705 * 173.42445 * 14 12 2 26 26 H 1.08994 * 109.47097 * 174.29044 * 1 2 3 27 27 H 1.09004 * 109.46560 * 294.29561 * 1 2 3 28 28 H 1.08999 * 109.46536 * 54.28930 * 1 2 3 29 29 H 0.96990 * 119.99876 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.06621 * 258.64917 * 15 14 12 31 31 H 1.08996 * 109.06345 * 17.65473 * 15 14 12 32 32 H 1.08994 * 109.43457 * 80.07603 * 16 15 14 33 33 H 1.09000 * 109.43456 * 199.93937 * 16 15 14 34 34 H 1.08996 * 109.47329 * 56.04519 * 18 17 16 35 35 H 1.09001 * 109.47249 * 176.04452 * 18 17 16 36 36 H 1.08996 * 109.47029 * 296.04404 * 18 17 16 37 37 H 1.09000 * 108.50300 * 33.52361 * 19 17 16 38 38 H 1.09000 * 108.50538 * 150.98809 * 19 17 16 39 39 H 0.96701 * 116.99765 * 180.02562 * 24 22 20 40 40 H 1.09003 * 109.45859 * 29.09301 * 25 14 12 41 41 H 1.08996 * 109.46398 * 149.06711 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 1.3446 -2.1615 -4.4125 10 1 2.4872 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7120 12 6 2.0324 -0.7105 1.2304 13 8 2.5361 -1.8094 1.1329 14 7 1.9219 -0.1246 2.4391 15 6 1.4406 1.2710 2.5061 16 6 0.4449 1.4711 3.6643 17 7 -0.4344 0.3248 3.7551 18 6 -1.8017 0.7361 4.1002 19 6 0.0808 -0.6452 4.7210 20 6 1.0281 -1.6251 4.1543 21 1 0.5459 -2.1664 3.3403 22 6 1.4431 -2.5996 5.2263 23 8 2.6076 -2.7022 5.5315 24 8 0.5189 -3.3534 5.8422 25 6 2.2802 -0.8897 3.6136 26 1 -0.3633 -1.0225 -0.1022 27 1 -0.3632 0.4229 0.9367 28 1 -0.3632 0.5999 -0.8345 29 1 0.7088 1.1614 -3.4843 30 1 2.2928 1.9350 2.6506 31 1 0.9481 1.5232 1.5671 32 1 0.9939 1.5821 4.5994 33 1 -0.1466 2.3685 3.4831 34 1 -2.1574 1.4635 3.3706 35 1 -2.4561 -0.1355 4.0931 36 1 -1.8061 1.1856 5.0932 37 1 0.5828 -0.1025 5.5220 38 1 -0.7619 -1.1870 5.1503 39 1 0.8330 -3.9637 6.5234 40 1 3.0456 -1.6203 3.3515 41 1 2.6665 -0.2183 4.3805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060924.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -132.854545 kcal Electronic energy + Delta-G solvation = -24176.319006 eV Core-core repulsion = 20669.746218 eV Total energy + Delta-G solvation = -3506.572788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92691 -40.81047 -39.08588 -37.23204 -35.89029 -35.88044 -34.42610 -32.30041 -30.08708 -27.62128 -27.18171 -26.52988 -24.86083 -23.67991 -22.15946 -21.56258 -19.79930 -19.14253 -18.36328 -18.01469 -17.96169 -17.07920 -16.79944 -16.47284 -15.98601 -15.87825 -15.64628 -15.08298 -14.71515 -14.55231 -14.27149 -14.23090 -13.84869 -13.54405 -13.31831 -12.94803 -12.84499 -12.65317 -12.62295 -12.59741 -12.47122 -12.26985 -12.15327 -11.99643 -11.86985 -11.74961 -11.62956 -10.96428 -10.55654 -10.24076 -9.51086 -9.20915 -8.11794 -6.20632 1.08180 1.40877 1.41805 1.53323 1.71606 2.01363 2.38589 2.52349 3.00904 3.17698 3.51323 3.77742 3.99868 4.07043 4.15536 4.30434 4.36794 4.40079 4.50104 4.65839 4.70164 4.80731 4.83047 4.83914 4.86960 4.92718 4.99116 5.09276 5.15976 5.21203 5.51767 5.54776 5.76377 5.82020 6.01549 6.14070 6.20895 6.26007 6.61196 6.86106 6.92140 7.43880 7.55729 8.94179 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.005328 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.755604 B = 5254.464491 C = 6018.442119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.032 3.968 3 H 0.042 0.958 4 C -0.531 4.531 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.272 1.272 11 H -0.281 1.281 12 C 0.519 3.481 13 O -0.592 6.592 14 N -0.597 5.597 15 C 0.101 3.899 16 C 0.050 3.950 17 N -0.557 5.557 18 C 0.034 3.966 19 C 0.075 3.925 20 C -0.090 4.090 21 H 0.093 0.907 22 C 0.503 3.497 23 O -0.542 6.542 24 O -0.505 6.505 25 C 0.138 3.862 26 H 0.009 0.991 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.264 0.736 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.430 0.570 40 H 0.058 0.942 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 3.082 19.002 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.011 3.989 3 H 0.059 0.941 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.311 3.689 13 O -0.472 6.472 14 N -0.329 5.329 15 C -0.021 4.021 16 C -0.079 4.079 17 N -0.280 5.280 18 C -0.113 4.113 19 C -0.053 4.053 20 C -0.111 4.111 21 H 0.111 0.889 22 C 0.345 3.655 23 O -0.432 6.432 24 O -0.318 6.318 25 C 0.014 3.986 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.292 0.708 40 H 0.076 0.924 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.412 2.682 18.177 19.461 hybrid contribution 0.784 -0.842 -0.014 1.151 sum -5.628 1.840 18.163 19.104 Atomic orbital electron populations 1.21494 0.94598 0.99161 1.01308 1.18748 0.95360 0.95707 0.89116 0.94069 1.21295 1.31663 1.12465 0.91495 0.94047 1.25518 0.95233 0.95736 1.01110 1.69946 1.37137 1.23393 1.24187 0.85670 0.78518 0.78627 0.79482 1.20214 1.19704 1.20645 1.21747 0.75843 0.85440 0.85919 1.90497 1.45996 1.23678 1.87073 1.47626 1.65919 1.14667 1.04700 1.22486 0.97824 0.80062 1.01753 1.22434 0.94552 0.93599 0.97353 1.60499 1.03721 1.13749 1.50067 1.22467 0.87268 1.01423 1.00163 1.20750 0.97874 0.94179 0.92517 1.20763 0.99509 0.95445 0.95405 0.88859 1.23012 0.83080 0.79141 0.80246 1.90718 1.21173 1.67356 1.63912 1.84493 1.42047 1.52185 1.53100 1.21049 0.94279 0.95417 0.87875 0.97187 0.91861 0.91507 0.92633 0.90322 0.89574 0.91957 0.87549 0.90515 0.91285 0.93802 0.92556 0.89018 0.70776 0.92371 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.05 8.42 71.98 0.61 -4.44 16 2 C 0.03 1.63 1.76 -12.28 -0.02 1.61 16 3 H 0.04 2.13 7.06 -2.39 -0.02 2.12 16 4 C -0.53 -31.52 8.36 25.60 0.21 -31.30 16 5 H 0.04 2.66 6.82 -2.91 -0.02 2.64 16 6 C 0.02 1.33 5.30 84.65 0.45 1.78 16 7 N -0.91 -50.99 11.38 21.45 0.24 -50.75 16 8 Si 0.95 45.74 29.54 68.60 2.03 47.76 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 12 C 0.52 24.87 6.84 87.66 0.60 25.47 16 13 O -0.59 -33.24 14.92 -3.04 -0.05 -33.28 16 14 N -0.60 -21.41 2.53 -817.13 -2.07 -23.48 16 15 C 0.10 2.78 5.66 86.48 0.49 3.27 16 16 C 0.05 0.95 5.52 87.05 0.48 1.43 16 17 N -0.56 -11.88 4.41 -938.20 -4.14 -16.02 16 18 C 0.03 0.52 9.17 127.69 1.17 1.69 16 19 C 0.07 1.53 4.17 84.74 0.35 1.88 16 20 C -0.09 -2.46 2.79 -12.56 -0.03 -2.50 16 21 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 22 C 0.50 12.76 7.60 71.24 0.54 13.30 16 23 O -0.54 -16.93 16.59 21.98 0.36 -16.56 16 24 O -0.50 -8.94 13.13 -51.42 -0.67 -9.61 16 25 C 0.14 4.46 4.23 87.39 0.37 4.83 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 2.47 6.33 -2.38 -0.02 2.45 16 28 H 0.07 3.38 6.24 -2.39 -0.01 3.37 16 29 H 0.26 14.05 8.31 -92.72 -0.77 13.28 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.74 4.33 -2.39 -0.01 2.73 16 32 H 0.06 0.98 7.14 -2.39 -0.02 0.97 16 33 H 0.11 1.57 7.52 -2.39 -0.02 1.55 16 34 H 0.08 1.16 7.96 -2.39 -0.02 1.14 16 35 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 36 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.97 7.18 -2.39 -0.02 0.95 16 38 H 0.09 1.62 7.35 -2.39 -0.02 1.60 16 39 H 0.43 3.59 9.10 -74.06 -0.67 2.91 16 40 H 0.06 2.31 6.83 -2.39 -0.02 2.30 16 41 H 0.10 2.57 8.09 -2.39 -0.02 2.55 16 Total: -1.00 -75.74 324.54 1.30 -74.44 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.38 Total: 10.49 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 5.22 Total: 17.01 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -5.97 Total: -90.25 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -0.36 Total: -59.46 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.74 1.30 -74.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060924.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.412 kcal (2) G-P(sol) polarization free energy of solvation -75.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds