Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 N 1.46896 * 109.47557 * 120.00235 * 2 1 3 5 5 C 1.46902 * 110.99969 * 275.00514 * 4 2 1 6 6 H 1.09001 * 109.47357 * 34.99319 * 5 4 2 7 7 C 1.50699 * 109.47457 * 154.99608 * 5 4 2 8 8 O 1.20829 * 119.99778 * 0.02562 * 7 5 4 9 9 O 1.34228 * 120.00357 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47145 * 274.99589 * 5 4 2 11 11 C 1.53000 * 117.50011 * 248.62425 * 10 5 4 12 12 C 1.52997 * 117.50486 * 179.97438 * 10 5 4 13 13 C 1.50703 * 109.47346 * 240.00424 * 2 1 3 14 14 O 1.21281 * 120.00287 * 245.93674 * 13 2 1 15 15 N 1.34776 * 119.99994 * 65.93500 * 13 2 1 16 16 C 1.46502 * 120.00075 * 4.61231 * 15 13 2 17 17 C 1.46498 * 120.00121 * 184.61355 * 15 13 2 18 18 C 1.50709 * 109.46963 * 89.99929 * 17 15 13 19 19 H 1.08003 * 119.99790 * 0.02562 * 18 17 15 20 20 C 1.37872 * 119.99874 * 179.97438 * 18 17 15 21 21 N 1.31514 * 119.99867 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00346 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47123 * 89.99331 * 22 20 18 24 24 H 1.48498 * 109.47364 * 209.99956 * 22 20 18 25 25 H 1.48506 * 109.46826 * 329.99737 * 22 20 18 26 26 H 1.08999 * 109.47334 * 309.16823 * 1 2 3 27 27 H 1.08994 * 109.47085 * 69.17072 * 1 2 3 28 28 H 1.09004 * 109.47042 * 189.16728 * 1 2 3 29 29 H 1.00899 * 111.00630 * 151.04872 * 4 2 1 30 30 H 0.96699 * 116.99973 * 179.97438 * 9 7 5 31 31 H 1.09005 * 115.54569 * 34.32833 * 10 5 4 32 32 H 1.09002 * 117.49950 * 0.02562 * 11 10 5 33 33 H 1.09006 * 117.49702 * 145.01422 * 11 10 5 34 34 H 1.08999 * 117.50220 * 214.98317 * 12 10 5 35 35 H 1.09007 * 117.49461 * 359.97438 * 12 10 5 36 36 H 1.09001 * 109.46759 * 95.84475 * 16 15 13 37 37 H 1.08998 * 109.47418 * 215.84558 * 16 15 13 38 38 H 1.08999 * 109.46963 * 335.85233 * 16 15 13 39 39 H 1.08998 * 109.47328 * 209.99810 * 17 15 13 40 40 H 1.08993 * 109.46991 * 330.00509 * 17 15 13 41 41 H 0.96997 * 120.00181 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0824 0.2225 2.3469 6 1 1.2576 0.9329 2.2907 7 6 1.9786 -0.5677 3.6258 8 8 1.8646 -1.7699 3.5856 9 8 2.0138 0.0638 4.8098 10 6 3.4111 0.9809 2.3224 11 6 4.4274 0.6610 3.4204 12 6 3.6692 1.9903 3.4428 13 6 2.0324 -0.7103 -1.2305 14 8 2.6383 -1.7554 -1.1226 15 7 1.8083 -0.1843 -2.4510 16 6 1.1661 1.1265 -2.5770 17 6 2.2068 -0.9231 -3.6516 18 6 1.0693 -1.8043 -4.0998 19 1 0.1421 -1.8126 -3.5460 20 6 1.2120 -2.5988 -5.2175 21 7 0.2195 -3.3681 -5.6084 22 14 2.8154 -2.5839 -6.1758 23 1 3.7288 -3.6189 -5.6285 24 1 2.5400 -2.8729 -7.6061 25 1 3.4520 -1.2477 -6.0544 26 1 -0.3634 0.6491 0.7967 27 1 -0.3633 0.3654 -0.9605 28 1 -0.3633 -1.0146 0.1637 29 1 2.9174 -1.1205 1.0287 30 1 1.9434 -0.4854 5.6025 31 1 3.7982 1.2191 1.3317 32 1 4.1497 -0.0900 4.1600 33 1 5.4836 0.6886 3.1521 34 1 4.2266 2.8920 3.1893 35 1 2.8922 2.1144 4.1972 36 1 1.9301 1.8963 -2.6862 37 1 0.5181 1.1308 -3.4535 38 1 0.5726 1.3275 -1.6852 39 1 2.4558 -0.2191 -4.4456 40 1 3.0770 -1.5397 -3.4265 41 1 0.3199 -3.9274 -6.3945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604319971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = -77.358268 kcal Electronic energy + Delta-G solvation = -23239.978847 eV Core-core repulsion = 19735.812558 eV Total energy + Delta-G solvation = -3504.166289 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82042 -39.49102 -37.68091 -36.35985 -35.24083 -34.95732 -32.59159 -30.91064 -28.31858 -27.08743 -26.09154 -23.67280 -23.10945 -22.58433 -21.64225 -20.12411 -18.84079 -18.04606 -17.32606 -16.95860 -16.59036 -16.29009 -15.67905 -15.24122 -14.96379 -14.47153 -14.13851 -14.08148 -13.82385 -13.34319 -12.87252 -12.56559 -12.46671 -12.31209 -12.28266 -11.95054 -11.72041 -11.66569 -11.54823 -11.43024 -11.22108 -10.85848 -10.82273 -10.69286 -10.53075 -10.23845 -10.15231 -9.54578 -9.02301 -8.59386 -8.57140 -7.74684 -6.08655 -4.07828 2.15020 2.64752 3.21548 3.29066 3.34916 3.37011 3.48397 3.71810 4.13704 4.29615 4.39457 4.56275 4.71292 4.83947 4.95824 5.04603 5.11172 5.21221 5.25188 5.34242 5.39673 5.49993 5.58393 5.76829 5.80285 5.81295 5.86151 5.91545 6.11446 6.36781 6.44507 6.59924 6.78687 6.93342 7.25638 7.30550 7.59848 7.84324 8.17952 8.45885 8.86627 8.95694 9.51210 11.04680 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.003874 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.005143 B = 7226.052901 C = 7344.177316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.068 0.932 4 N -0.648 5.648 5 C 0.131 3.869 6 H 0.118 0.882 7 C 0.482 3.518 8 O -0.484 6.484 9 O -0.522 6.522 10 C -0.193 4.193 11 C -0.176 4.176 12 C -0.162 4.162 13 C 0.507 3.493 14 O -0.530 6.530 15 N -0.594 5.594 16 C 0.068 3.932 17 C 0.215 3.785 18 C -0.530 4.530 19 H 0.075 0.925 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.366 0.634 30 H 0.406 0.594 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 15.260 17.914 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.042 4.042 3 H 0.086 0.914 4 N -0.284 5.284 5 C 0.019 3.981 6 H 0.136 0.864 7 C 0.321 3.679 8 O -0.369 6.369 9 O -0.335 6.335 10 C -0.213 4.213 11 C -0.213 4.213 12 C -0.200 4.200 13 C 0.293 3.707 14 O -0.406 6.406 15 N -0.326 5.326 16 C -0.076 4.076 17 C 0.095 3.905 18 C -0.569 4.569 19 H 0.093 0.907 20 C -0.130 4.130 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.190 0.810 30 H 0.265 0.735 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.152 14.174 17.568 22.952 hybrid contribution 1.384 0.046 -0.398 1.441 sum 5.535 14.220 17.170 22.971 Atomic orbital electron populations 1.21986 0.92187 1.03993 1.02317 1.21470 0.97717 0.96258 0.88743 0.91426 1.59969 1.36399 1.29872 1.02158 1.20679 0.97769 0.91964 0.87661 0.86411 1.23217 0.72484 0.87216 0.84973 1.90768 1.43046 1.15782 1.87271 1.84565 1.85762 1.46174 1.16949 1.23059 0.97125 1.04560 0.96526 1.23108 0.97561 0.99944 1.00663 1.23018 1.03417 0.93038 1.00483 1.20184 0.80449 0.85705 0.84409 1.90683 1.41261 1.22848 1.85826 1.47752 1.59090 1.19145 1.06584 1.21998 0.97651 0.84398 1.03553 1.19680 0.97188 0.92070 0.81579 1.21324 1.00393 1.23584 1.11578 0.90657 1.24853 0.96403 0.94711 0.96994 1.69894 1.31597 1.26427 1.25544 0.86849 0.84329 0.79127 0.79358 1.19887 1.21060 1.19126 0.92340 0.90372 0.90660 0.80981 0.73487 0.86508 0.88659 0.88525 0.88638 0.87302 0.93601 0.90548 0.90766 0.95186 0.94462 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.83 37.16 0.33 -1.66 16 2 C 0.07 1.03 2.00 -68.87 -0.14 0.89 16 3 H 0.07 0.77 7.06 -51.93 -0.37 0.41 16 4 N -0.65 -9.61 5.39 -102.17 -0.55 -10.16 16 5 C 0.13 1.45 2.71 -68.86 -0.19 1.26 16 6 H 0.12 1.09 7.21 -51.93 -0.37 0.72 16 7 C 0.48 5.66 6.17 36.01 0.22 5.88 16 8 O -0.48 -7.78 17.19 -18.75 -0.32 -8.10 16 9 O -0.52 -4.08 10.31 -39.25 -0.40 -4.49 16 10 C -0.19 -1.80 5.47 -90.62 -0.50 -2.30 16 11 C -0.18 -1.55 9.54 -26.71 -0.25 -1.81 16 12 C -0.16 -1.21 9.77 -26.71 -0.26 -1.47 16 13 C 0.51 10.13 6.98 -10.98 -0.08 10.06 16 14 O -0.53 -12.97 15.28 5.56 0.08 -12.89 16 15 N -0.59 -11.90 2.86 -182.95 -0.52 -12.42 16 16 C 0.07 0.98 9.74 59.85 0.58 1.56 16 17 C 0.22 5.23 4.29 -5.19 -0.02 5.21 16 18 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 19 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 22 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 26 H 0.06 0.61 7.57 -51.93 -0.39 0.21 16 27 H 0.08 1.04 5.41 -51.93 -0.28 0.76 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.37 6.07 7.29 -39.29 -0.29 5.78 16 30 H 0.41 1.68 9.10 45.56 0.41 2.10 16 31 H 0.12 1.12 7.94 -51.93 -0.41 0.70 16 32 H 0.10 0.89 5.85 -51.93 -0.30 0.59 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.78 6.85 -51.93 -0.36 0.43 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 38 H 0.07 0.87 4.11 -51.93 -0.21 0.66 16 39 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 40 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -36.53 333.49 -6.32 -42.86 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.00 Total: 6.10 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.74 Total: 4.09 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.30 Total: -49.55 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.64 Total: -25.48 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.53 -6.32 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604319971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.502 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds