Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 N 1.46896 * 109.47557 * 120.00235 * 2 1 3 5 5 C 1.46902 * 110.99969 * 275.00514 * 4 2 1 6 6 H 1.09001 * 109.47357 * 34.99319 * 5 4 2 7 7 C 1.50699 * 109.47457 * 154.99608 * 5 4 2 8 8 O 1.20829 * 119.99778 * 0.02562 * 7 5 4 9 9 O 1.34228 * 120.00357 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47145 * 274.99589 * 5 4 2 11 11 C 1.53000 * 117.50011 * 248.62425 * 10 5 4 12 12 C 1.52997 * 117.50486 * 179.97438 * 10 5 4 13 13 C 1.50703 * 109.47346 * 240.00424 * 2 1 3 14 14 O 1.21281 * 120.00287 * 245.93674 * 13 2 1 15 15 N 1.34776 * 119.99994 * 65.93500 * 13 2 1 16 16 C 1.46502 * 120.00075 * 4.61231 * 15 13 2 17 17 C 1.46498 * 120.00121 * 184.61355 * 15 13 2 18 18 C 1.50709 * 109.46963 * 89.99929 * 17 15 13 19 19 H 1.08003 * 119.99790 * 0.02562 * 18 17 15 20 20 C 1.37872 * 119.99874 * 179.97438 * 18 17 15 21 21 N 1.31514 * 119.99867 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00346 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47123 * 89.99331 * 22 20 18 24 24 H 1.48498 * 109.47364 * 209.99956 * 22 20 18 25 25 H 1.48506 * 109.46826 * 329.99737 * 22 20 18 26 26 H 1.08999 * 109.47334 * 309.16823 * 1 2 3 27 27 H 1.08994 * 109.47085 * 69.17072 * 1 2 3 28 28 H 1.09004 * 109.47042 * 189.16728 * 1 2 3 29 29 H 1.00899 * 111.00630 * 151.04872 * 4 2 1 30 30 H 0.96699 * 116.99973 * 179.97438 * 9 7 5 31 31 H 1.09005 * 115.54569 * 34.32833 * 10 5 4 32 32 H 1.09002 * 117.49950 * 0.02562 * 11 10 5 33 33 H 1.09006 * 117.49702 * 145.01422 * 11 10 5 34 34 H 1.08999 * 117.50220 * 214.98317 * 12 10 5 35 35 H 1.09007 * 117.49461 * 359.97438 * 12 10 5 36 36 H 1.09001 * 109.46759 * 95.84475 * 16 15 13 37 37 H 1.08998 * 109.47418 * 215.84558 * 16 15 13 38 38 H 1.08999 * 109.46963 * 335.85233 * 16 15 13 39 39 H 1.08998 * 109.47328 * 209.99810 * 17 15 13 40 40 H 1.08993 * 109.46991 * 330.00509 * 17 15 13 41 41 H 0.96997 * 120.00181 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0824 0.2225 2.3469 6 1 1.2576 0.9329 2.2907 7 6 1.9786 -0.5677 3.6258 8 8 1.8646 -1.7699 3.5856 9 8 2.0138 0.0638 4.8098 10 6 3.4111 0.9809 2.3224 11 6 4.4274 0.6610 3.4204 12 6 3.6692 1.9903 3.4428 13 6 2.0324 -0.7103 -1.2305 14 8 2.6383 -1.7554 -1.1226 15 7 1.8083 -0.1843 -2.4510 16 6 1.1661 1.1265 -2.5770 17 6 2.2068 -0.9231 -3.6516 18 6 1.0693 -1.8043 -4.0998 19 1 0.1421 -1.8126 -3.5460 20 6 1.2120 -2.5988 -5.2175 21 7 0.2195 -3.3681 -5.6084 22 14 2.8154 -2.5839 -6.1758 23 1 3.7288 -3.6189 -5.6285 24 1 2.5400 -2.8729 -7.6061 25 1 3.4520 -1.2477 -6.0544 26 1 -0.3634 0.6491 0.7967 27 1 -0.3633 0.3654 -0.9605 28 1 -0.3633 -1.0146 0.1637 29 1 2.9174 -1.1205 1.0287 30 1 1.9434 -0.4854 5.6025 31 1 3.7982 1.2191 1.3317 32 1 4.1497 -0.0900 4.1600 33 1 5.4836 0.6886 3.1521 34 1 4.2266 2.8920 3.1893 35 1 2.8922 2.1144 4.1972 36 1 1.9301 1.8963 -2.6862 37 1 0.5181 1.1308 -3.4535 38 1 0.5726 1.3275 -1.6852 39 1 2.4558 -0.2191 -4.4456 40 1 3.0770 -1.5397 -3.4265 41 1 0.3199 -3.9274 -6.3945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604319971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = -106.435898 kcal Electronic energy + Delta-G solvation = -23241.239748 eV Core-core repulsion = 19735.812558 eV Total energy + Delta-G solvation = -3505.427190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74442 -40.91038 -38.54340 -37.25361 -36.72218 -36.17960 -34.69708 -32.14830 -30.10036 -28.12748 -27.41692 -25.34128 -23.88462 -23.30655 -23.07170 -20.96363 -20.21977 -19.14465 -18.93755 -18.49876 -17.76893 -17.31286 -16.84259 -16.60748 -16.11849 -15.96714 -15.70121 -15.11333 -14.80225 -14.60566 -14.34484 -14.05139 -13.72203 -13.65069 -13.43286 -13.21107 -13.17540 -12.97729 -12.70233 -12.47986 -12.34986 -12.25191 -12.20471 -11.97406 -11.74211 -11.71826 -11.40409 -10.99602 -10.83730 -10.60244 -9.60002 -9.38777 -8.34179 -6.39491 1.25769 1.31924 1.36809 1.44610 1.69020 1.81384 2.30552 2.34278 2.83871 3.00350 3.09697 3.52072 3.60199 3.86399 4.02279 4.11333 4.14599 4.21755 4.29129 4.36185 4.49932 4.66202 4.72957 4.77811 4.79339 4.84308 4.94871 4.98133 4.98861 5.16386 5.33533 5.34603 5.45420 5.56542 5.65048 5.79216 6.08087 6.23379 6.62354 6.67105 7.07206 7.20212 7.36568 8.82828 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.003874 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.005143 B = 7226.052901 C = 7344.177316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.086 3.914 3 H 0.113 0.887 4 N -0.672 5.672 5 C 0.131 3.869 6 H 0.145 0.855 7 C 0.489 3.511 8 O -0.538 6.538 9 O -0.504 6.504 10 C -0.199 4.199 11 C -0.190 4.190 12 C -0.136 4.136 13 C 0.495 3.505 14 O -0.588 6.588 15 N -0.601 5.601 16 C 0.060 3.940 17 C 0.223 3.777 18 C -0.537 4.537 19 H 0.029 0.971 20 C 0.010 3.990 21 N -0.946 5.946 22 Si 0.948 3.052 23 H -0.279 1.279 24 H -0.275 1.275 25 H -0.236 1.236 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.353 0.647 30 H 0.424 0.576 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.017 0.983 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 18.870 18.797 27.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.130 0.870 4 N -0.307 5.307 5 C 0.020 3.980 6 H 0.162 0.838 7 C 0.331 3.669 8 O -0.427 6.427 9 O -0.318 6.318 10 C -0.219 4.219 11 C -0.227 4.227 12 C -0.174 4.174 13 C 0.283 3.717 14 O -0.468 6.468 15 N -0.332 5.332 16 C -0.081 4.081 17 C 0.100 3.900 18 C -0.576 4.576 19 H 0.048 0.952 20 C -0.188 4.188 21 N -0.586 5.586 22 Si 0.771 3.229 23 H -0.205 1.205 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.119 0.881 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.175 0.825 30 H 0.286 0.714 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.196 17.878 18.497 26.244 hybrid contribution 0.968 -1.071 -0.540 1.541 sum 6.164 16.808 17.957 25.356 Atomic orbital electron populations 1.22010 0.91391 1.02812 1.04018 1.21442 0.97928 0.97360 0.85858 0.86961 1.59928 1.35834 1.31625 1.03273 1.20816 0.99788 0.91534 0.85905 0.83803 1.23398 0.70921 0.86450 0.86108 1.90762 1.45808 1.18040 1.88083 1.84508 1.84761 1.45783 1.16728 1.22953 0.96224 1.05626 0.97102 1.23158 0.97863 1.01113 1.00567 1.23091 1.02673 0.92668 0.98934 1.21255 0.79295 0.85264 0.85878 1.90645 1.43781 1.25556 1.86817 1.47850 1.59207 1.20667 1.05464 1.22338 0.98755 0.82314 1.04721 1.19342 0.94580 0.92111 0.83960 1.21578 1.00157 1.24674 1.11169 0.95236 1.25861 1.00485 0.94116 0.98301 1.70052 1.34277 1.27714 1.26529 0.85708 0.79042 0.80418 0.77714 1.20494 1.19970 1.15859 0.88114 0.90154 0.94272 0.82549 0.71387 0.86435 0.89584 0.88256 0.86940 0.86607 0.90021 0.91623 0.87665 0.92899 0.96445 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 8.83 71.98 0.64 -3.00 16 2 C 0.09 2.34 2.00 44.17 0.09 2.43 16 3 H 0.11 2.06 7.06 -2.39 -0.02 2.05 16 4 N -0.67 -19.49 5.39 -477.16 -2.57 -22.06 16 5 C 0.13 2.58 2.71 44.17 0.12 2.70 16 6 H 0.14 2.05 7.21 -2.39 -0.02 2.03 16 7 C 0.49 10.86 6.17 71.24 0.44 11.30 16 8 O -0.54 -17.51 17.19 21.95 0.38 -17.14 16 9 O -0.50 -6.65 10.31 -51.40 -0.53 -7.18 16 10 C -0.20 -3.17 5.47 -10.79 -0.06 -3.23 16 11 C -0.19 -2.98 9.54 30.61 0.29 -2.69 16 12 C -0.14 -1.52 9.77 30.61 0.30 -1.22 16 13 C 0.49 19.81 6.98 87.66 0.61 20.42 16 14 O -0.59 -29.93 15.28 -3.03 -0.05 -29.98 16 15 N -0.60 -23.64 2.86 -851.13 -2.43 -26.08 16 16 C 0.06 1.58 9.74 127.77 1.24 2.82 16 17 C 0.22 10.80 4.29 85.64 0.37 11.17 16 18 C -0.54 -31.82 9.94 25.60 0.25 -31.57 16 19 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 20 C 0.01 0.62 5.47 84.65 0.46 1.08 16 21 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 22 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 26 H 0.10 1.68 7.57 -2.39 -0.02 1.66 16 27 H 0.08 1.97 5.41 -2.39 -0.01 1.96 16 28 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.35 11.96 7.29 -89.69 -0.65 11.30 16 30 H 0.42 2.59 9.10 -74.06 -0.67 1.91 16 31 H 0.12 1.90 7.94 -2.38 -0.02 1.88 16 32 H 0.09 1.50 5.85 -2.39 -0.01 1.49 16 33 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.12 1.16 6.85 -2.38 -0.02 1.15 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.88 8.11 -2.39 -0.02 1.86 16 38 H 0.11 2.08 4.11 -2.39 -0.01 2.07 16 39 H 0.05 2.32 7.13 -2.39 -0.02 2.31 16 40 H 0.02 0.92 6.79 -2.39 -0.02 0.90 16 41 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -85.89 333.49 1.43 -84.46 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.31 Total: 21.27 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 4.76 Total: 10.21 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -4.70 Total: -108.34 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.20 Total: -54.29 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -85.89 1.43 -84.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604319971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.975 kcal (2) G-P(sol) polarization free energy of solvation -85.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds