Wall clock time and date at job start Tue Mar 31 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47186 * 2 1 4 4 C 1.36937 * 120.00222 * 265.88935 * 3 2 1 5 5 H 1.08001 * 119.99819 * 146.22515 * 4 3 2 6 6 C 1.38807 * 120.00350 * 326.22716 * 4 3 2 7 7 N 1.31623 * 119.99726 * 337.66994 * 6 4 3 8 8 Si 1.86793 * 120.00397 * 157.67014 * 6 4 3 9 9 H 1.48502 * 109.47311 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47401 * 119.99670 * 8 6 4 11 11 H 1.48502 * 109.47251 * 239.99950 * 8 6 4 12 12 C 1.46497 * 119.99785 * 85.89143 * 3 2 1 13 13 H 1.09003 * 109.33538 * 359.78411 * 12 3 2 14 14 C 1.53073 * 109.40209 * 119.57207 * 12 3 2 15 15 C 1.53345 * 108.42836 * 169.02898 * 14 12 3 16 16 C 1.53107 * 108.53062 * 292.31291 * 15 14 12 17 17 N 1.45751 * 110.38470 * 51.10879 * 16 15 14 18 18 C 1.46503 * 117.94523 * 160.75050 * 17 16 15 19 19 C 1.53005 * 109.47042 * 269.73710 * 18 17 16 20 20 C 1.50695 * 109.47146 * 179.97438 * 19 18 17 21 21 O 1.20827 * 119.99871 * 0.02562 * 20 19 18 22 22 O 1.34228 * 120.00137 * 179.97438 * 20 19 18 23 23 C 1.33357 * 124.10843 * 340.46620 * 17 16 15 24 24 O 1.21285 * 118.24577 * 182.52264 * 23 17 16 25 25 H 1.08998 * 109.47089 * 59.99879 * 1 2 3 26 26 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46717 * 299.99235 * 1 2 3 28 28 H 1.09003 * 109.46525 * 240.00094 * 2 1 3 29 29 H 1.08995 * 109.47474 * 120.00771 * 2 1 3 30 30 H 0.96998 * 120.00202 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.67377 * 288.76228 * 14 12 3 32 32 H 1.08998 * 109.67451 * 49.29776 * 14 12 3 33 33 H 1.09007 * 109.60409 * 52.22379 * 15 14 12 34 34 H 1.08994 * 109.60870 * 172.55110 * 15 14 12 35 35 H 1.08996 * 109.49297 * 290.74054 * 16 15 14 36 36 H 1.08997 * 109.20764 * 171.29750 * 16 15 14 37 37 H 1.08996 * 109.47257 * 149.73825 * 18 17 16 38 38 H 1.08993 * 109.47055 * 29.73689 * 18 17 16 39 39 H 1.08998 * 109.46736 * 59.99499 * 19 18 17 40 40 H 1.08996 * 109.46899 * 300.00334 * 19 18 17 41 41 H 0.96700 * 117.00532 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3267 1.9984 -1.1828 5 1 2.1575 3.0587 -1.2988 6 6 2.8568 1.2613 -2.2328 7 7 3.4662 0.1195 -1.9936 8 14 2.7051 1.8897 -3.9853 9 1 1.9825 3.1871 -3.9853 10 1 4.0603 2.0787 -4.5625 11 1 1.9526 0.9034 -4.8015 12 6 2.1768 2.1020 1.2655 13 1 1.8805 1.4533 2.0899 14 6 3.6424 2.5080 1.4394 15 6 3.7379 3.4874 2.6154 16 6 3.0381 4.7909 2.2211 17 7 1.7016 4.5149 1.7094 18 6 0.7344 5.6150 1.6868 19 6 -0.0422 5.6384 3.0049 20 6 -1.0367 6.7704 2.9819 21 8 -1.1165 7.4849 2.0108 22 8 -1.8345 6.9844 4.0399 23 6 1.3056 3.3252 1.2553 24 8 0.1818 3.2257 0.8101 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8370 -0.3955 -2.7272 31 1 4.2457 1.6244 1.6478 32 1 3.9998 2.9908 0.5299 33 1 3.2508 3.0568 3.4904 34 1 4.7853 3.6869 2.8412 35 1 3.6206 5.2982 1.4522 36 1 2.9626 5.4362 3.0963 37 1 0.0403 5.4717 0.8587 38 1 1.2620 6.5601 1.5591 39 1 0.6519 5.7817 3.8330 40 1 -0.5698 4.6933 3.1325 41 1 -2.4567 7.7222 3.9786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:34 Heat of formation + Delta-G solvation = -106.237785 kcal Electronic energy + Delta-G solvation = -23814.946351 eV Core-core repulsion = 20309.527752 eV Total energy + Delta-G solvation = -3505.418599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49829 -39.79872 -36.41608 -35.97067 -35.82971 -33.62246 -31.41553 -30.60190 -29.50821 -27.36510 -25.24425 -24.42331 -22.86509 -21.87726 -20.85934 -20.27156 -18.52650 -18.02735 -16.81034 -16.77164 -16.23069 -15.61502 -15.47384 -15.25353 -14.43279 -14.09527 -13.83719 -13.64952 -13.43923 -13.09730 -12.84802 -12.74138 -12.30284 -12.04761 -11.75743 -11.66961 -11.53020 -11.30497 -11.05643 -10.92886 -10.76247 -10.73854 -10.70865 -10.54050 -10.35603 -9.96558 -9.73470 -9.53285 -8.93553 -8.43373 -8.32530 -6.62857 -5.79557 -3.31344 2.09663 2.79216 3.34672 3.38551 3.46744 3.52872 3.63322 4.49744 4.77148 4.89448 5.04366 5.13652 5.23228 5.23572 5.39297 5.44914 5.51458 5.56507 5.77008 5.82803 6.03481 6.05181 6.12739 6.17946 6.33257 6.35943 6.43568 6.64400 6.68405 6.81573 6.91379 6.97433 7.08806 7.40028 7.75529 7.79185 7.84550 7.99019 8.49426 8.93121 9.17497 9.79339 10.34234 11.21683 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.005041 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.481760 B = 5552.701487 C = 5758.942621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 N -0.558 5.558 4 C -0.245 4.245 5 H 0.057 0.943 6 C 0.011 3.989 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.287 1.287 12 C 0.167 3.833 13 H 0.079 0.921 14 C -0.127 4.127 15 C -0.134 4.134 16 C 0.120 3.880 17 N -0.613 5.613 18 C 0.119 3.881 19 C -0.127 4.127 20 C 0.485 3.515 21 O -0.515 6.515 22 O -0.520 6.520 23 C 0.506 3.494 24 O -0.535 6.535 25 H 0.049 0.951 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.103 0.897 29 H 0.020 0.980 30 H 0.254 0.746 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 9.036 13.587 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 N -0.277 5.277 4 C -0.375 4.375 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.217 1.217 11 H -0.214 1.214 12 C 0.055 3.945 13 H 0.097 0.903 14 C -0.167 4.167 15 C -0.172 4.172 16 C -0.004 4.004 17 N -0.348 5.348 18 C -0.005 4.005 19 C -0.166 4.166 20 C 0.327 3.673 21 O -0.403 6.403 22 O -0.332 6.332 23 C 0.293 3.707 24 O -0.410 6.410 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.120 0.880 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.154 8.640 12.944 15.711 hybrid contribution -0.521 0.927 -0.924 1.409 sum -2.676 9.567 12.020 15.594 Atomic orbital electron populations 1.22277 1.00406 0.98090 1.01138 1.21054 0.90134 0.85554 1.01835 1.43668 1.73102 1.11115 0.99796 1.18929 1.35282 0.93874 0.89379 0.92504 1.24987 0.97128 0.97775 0.98934 1.69992 1.36606 1.15802 1.30623 0.86345 0.77344 0.78643 0.85210 1.20172 1.21716 1.21377 1.20198 0.92073 0.90418 0.91808 0.90299 1.22111 0.98198 0.98739 0.97651 1.21939 1.00398 0.95394 0.99505 1.21348 0.82979 0.97891 0.98134 1.47631 1.12289 1.10292 1.64614 1.21095 0.92889 0.90560 0.95940 1.21758 0.96408 0.96260 1.02189 1.23463 0.79755 0.84674 0.79437 1.90739 1.67922 1.47498 1.34123 1.84551 1.49882 1.54463 1.44287 1.21992 0.88964 0.84428 0.75317 1.90612 1.21462 1.84590 1.44324 0.93228 0.95155 0.94486 0.87993 0.96145 0.93623 0.91396 0.90098 0.91741 0.90567 0.92070 0.91833 0.88699 0.90326 0.87798 0.87211 0.73347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 10.24 37.16 0.38 -3.14 16 2 C 0.14 3.34 5.92 -4.05 -0.02 3.31 16 3 N -0.56 -13.71 2.14 -167.24 -0.36 -14.07 16 4 C -0.24 -6.66 8.08 -15.06 -0.12 -6.78 16 5 H 0.06 1.63 7.57 -52.49 -0.40 1.23 16 6 C 0.01 0.31 4.93 -17.43 -0.09 0.22 16 7 N -0.89 -24.87 11.31 55.49 0.63 -24.24 16 8 Si 0.90 22.00 29.61 -169.99 -5.03 16.96 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 C 0.17 3.40 2.84 -69.30 -0.20 3.20 16 13 H 0.08 1.51 7.84 -51.93 -0.41 1.10 16 14 C -0.13 -2.24 5.44 -26.51 -0.14 -2.39 16 15 C -0.13 -1.67 6.03 -26.50 -0.16 -1.83 16 16 C 0.12 1.47 6.32 -4.39 -0.03 1.44 16 17 N -0.61 -9.70 2.81 -174.85 -0.49 -10.19 16 18 C 0.12 1.73 4.51 -4.04 -0.02 1.72 16 19 C -0.13 -1.48 6.13 -27.88 -0.17 -1.65 16 20 C 0.48 5.80 8.33 36.00 0.30 6.10 16 21 O -0.51 -7.80 16.74 -18.75 -0.31 -8.11 16 22 O -0.52 -4.75 13.42 -39.25 -0.53 -5.28 16 23 C 0.51 10.15 6.37 -11.87 -0.08 10.07 16 24 O -0.54 -12.66 15.87 5.55 0.09 -12.57 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 2.73 5.31 -51.93 -0.28 2.45 16 29 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 30 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.08 1.65 7.33 -51.93 -0.38 1.26 16 33 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.09 1.71 7.09 -51.93 -0.37 1.34 16 38 H 0.08 1.01 7.97 -51.93 -0.41 0.60 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.41 1.98 9.10 45.56 0.41 2.40 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -33.37 338.26 -6.86 -40.23 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.60 Total: 1.88 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.34 Total: 10.29 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.22 Total: -48.50 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.75 Total: -25.96 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.37 -6.86 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.007 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds