Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46491 * 109.47186 * 2 1 4 4 C 1.36937 * 120.00222 * 265.88935 * 3 2 1 5 5 H 1.08001 * 119.99819 * 146.22515 * 4 3 2 6 6 C 1.38807 * 120.00350 * 326.22716 * 4 3 2 7 7 N 1.31623 * 119.99726 * 337.66994 * 6 4 3 8 8 Si 1.86793 * 120.00397 * 157.67014 * 6 4 3 9 9 H 1.48502 * 109.47311 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47401 * 119.99670 * 8 6 4 11 11 H 1.48502 * 109.47251 * 239.99950 * 8 6 4 12 12 C 1.46497 * 119.99785 * 85.89143 * 3 2 1 13 13 H 1.09003 * 109.33538 * 359.78411 * 12 3 2 14 14 C 1.53073 * 109.40209 * 119.57207 * 12 3 2 15 15 C 1.53345 * 108.42836 * 169.02898 * 14 12 3 16 16 C 1.53107 * 108.53062 * 292.31291 * 15 14 12 17 17 N 1.45751 * 110.38470 * 51.10879 * 16 15 14 18 18 C 1.46503 * 117.94523 * 160.75050 * 17 16 15 19 19 C 1.53005 * 109.47042 * 269.73710 * 18 17 16 20 20 C 1.50695 * 109.47146 * 179.97438 * 19 18 17 21 21 O 1.20827 * 119.99871 * 0.02562 * 20 19 18 22 22 O 1.34228 * 120.00137 * 179.97438 * 20 19 18 23 23 C 1.33357 * 124.10843 * 340.46620 * 17 16 15 24 24 O 1.21285 * 118.24577 * 182.52264 * 23 17 16 25 25 H 1.08998 * 109.47089 * 59.99879 * 1 2 3 26 26 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46717 * 299.99235 * 1 2 3 28 28 H 1.09003 * 109.46525 * 240.00094 * 2 1 3 29 29 H 1.08995 * 109.47474 * 120.00771 * 2 1 3 30 30 H 0.96998 * 120.00202 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.67377 * 288.76228 * 14 12 3 32 32 H 1.08998 * 109.67451 * 49.29776 * 14 12 3 33 33 H 1.09007 * 109.60409 * 52.22379 * 15 14 12 34 34 H 1.08994 * 109.60870 * 172.55110 * 15 14 12 35 35 H 1.08996 * 109.49297 * 290.74054 * 16 15 14 36 36 H 1.08997 * 109.20764 * 171.29750 * 16 15 14 37 37 H 1.08996 * 109.47257 * 149.73825 * 18 17 16 38 38 H 1.08993 * 109.47055 * 29.73689 * 18 17 16 39 39 H 1.08998 * 109.46736 * 59.99499 * 19 18 17 40 40 H 1.08996 * 109.46899 * 300.00334 * 19 18 17 41 41 H 0.96700 * 117.00532 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3267 1.9984 -1.1828 5 1 2.1575 3.0587 -1.2988 6 6 2.8568 1.2613 -2.2328 7 7 3.4662 0.1195 -1.9936 8 14 2.7051 1.8897 -3.9853 9 1 1.9825 3.1871 -3.9853 10 1 4.0603 2.0787 -4.5625 11 1 1.9526 0.9034 -4.8015 12 6 2.1768 2.1020 1.2655 13 1 1.8805 1.4533 2.0899 14 6 3.6424 2.5080 1.4394 15 6 3.7379 3.4874 2.6154 16 6 3.0381 4.7909 2.2211 17 7 1.7016 4.5149 1.7094 18 6 0.7344 5.6150 1.6868 19 6 -0.0422 5.6384 3.0049 20 6 -1.0367 6.7704 2.9819 21 8 -1.1165 7.4849 2.0108 22 8 -1.8345 6.9844 4.0399 23 6 1.3056 3.3252 1.2553 24 8 0.1818 3.2257 0.8101 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8370 -0.3955 -2.7272 31 1 4.2457 1.6244 1.6478 32 1 3.9998 2.9908 0.5299 33 1 3.2508 3.0568 3.4904 34 1 4.7853 3.6869 2.8412 35 1 3.6206 5.2982 1.4522 36 1 2.9626 5.4362 3.0963 37 1 0.0403 5.4717 0.8587 38 1 1.2620 6.5601 1.5591 39 1 0.6519 5.7817 3.8330 40 1 -0.5698 4.6933 3.1325 41 1 -2.4567 7.7222 3.9786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411235.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = -129.078127 kcal Electronic energy + Delta-G solvation = -23815.936782 eV Core-core repulsion = 20309.527752 eV Total energy + Delta-G solvation = -3506.409030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.64911 -41.02615 -37.83698 -37.32337 -37.09732 -35.03544 -33.33709 -31.93216 -31.01056 -29.04194 -26.47668 -26.16394 -24.40327 -23.07840 -22.29237 -21.75832 -19.82567 -19.07958 -18.43141 -17.86648 -17.46890 -17.19662 -16.84204 -16.65355 -16.19676 -15.64424 -15.39301 -15.01571 -14.50777 -14.47569 -14.18016 -14.01736 -13.91023 -13.54743 -13.40371 -13.22047 -12.85937 -12.67226 -12.57795 -12.53968 -12.41762 -12.17829 -12.01228 -11.97749 -11.76833 -11.69130 -11.49500 -11.42830 -10.62502 -10.34870 -9.62438 -8.60553 -7.85817 -5.39859 1.17226 1.38415 1.43479 1.52777 1.80772 1.84808 2.47779 2.51172 3.22057 3.60137 3.76147 3.81021 4.01157 4.12953 4.17662 4.31607 4.34980 4.50402 4.52491 4.55925 4.70863 4.77579 4.84084 4.92778 4.94043 4.96557 5.08414 5.12808 5.23666 5.32218 5.48602 5.58276 5.60161 5.66632 5.68197 5.86997 6.44190 6.61390 6.96946 7.13913 7.42806 7.82639 8.32565 9.11855 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.005041 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.481760 B = 5552.701487 C = 5758.942621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.137 3.863 3 N -0.575 5.575 4 C -0.242 4.242 5 H 0.033 0.967 6 C -0.029 4.029 7 N -0.907 5.907 8 Si 0.944 3.056 9 H -0.285 1.285 10 H -0.282 1.282 11 H -0.288 1.288 12 C 0.158 3.842 13 H 0.092 0.908 14 C -0.119 4.119 15 C -0.121 4.121 16 C 0.110 3.890 17 N -0.605 5.605 18 C 0.120 3.880 19 C -0.118 4.118 20 C 0.493 3.507 21 O -0.554 6.554 22 O -0.510 6.510 23 C 0.503 3.497 24 O -0.583 6.583 25 H 0.019 0.981 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.253 0.747 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 10.230 16.172 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 N -0.294 5.294 4 C -0.373 4.373 5 H 0.051 0.949 6 C -0.226 4.226 7 N -0.551 5.551 8 Si 0.773 3.227 9 H -0.211 1.211 10 H -0.209 1.209 11 H -0.214 1.214 12 C 0.047 3.953 13 H 0.109 0.891 14 C -0.158 4.158 15 C -0.159 4.159 16 C -0.011 4.011 17 N -0.338 5.338 18 C -0.003 4.003 19 C -0.156 4.156 20 C 0.337 3.663 21 O -0.445 6.445 22 O -0.324 6.324 23 C 0.291 3.709 24 O -0.462 6.462 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.161 0.839 40 H 0.118 0.882 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -1.494 9.882 15.591 18.520 hybrid contribution -0.766 0.617 -1.633 1.907 sum -2.260 10.500 13.958 17.612 Atomic orbital electron populations 1.22099 0.99172 0.99420 0.99625 1.20989 0.91062 0.85552 1.01198 1.43775 1.73570 1.11440 1.00648 1.18792 1.34512 0.92921 0.91055 0.94920 1.25462 0.97557 0.98277 1.01303 1.70067 1.37488 1.16511 1.31071 0.85595 0.77318 0.77579 0.82238 1.21066 1.20879 1.21423 1.20475 0.93925 0.90637 0.90220 0.89064 1.21944 0.95562 0.99676 0.98660 1.21914 1.02764 0.93791 0.97455 1.21719 0.80750 0.98681 0.99971 1.47591 1.13937 1.09130 1.63155 1.21083 0.92383 0.90541 0.96343 1.21611 0.96812 0.95721 1.01468 1.23415 0.79666 0.84060 0.79198 1.90739 1.69131 1.49003 1.35592 1.84494 1.49779 1.55382 1.42735 1.21773 0.88108 0.85715 0.75349 1.90592 1.23262 1.85617 1.46742 0.96177 0.92327 0.94376 0.90778 0.94513 0.93771 0.92069 0.93467 0.89713 0.87403 0.92053 0.86934 0.93079 0.88337 0.83886 0.88201 0.70997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.40 10.24 71.98 0.74 -5.66 16 2 C 0.14 6.66 5.92 86.38 0.51 7.17 16 3 N -0.57 -28.85 2.14 -683.02 -1.46 -30.31 16 4 C -0.24 -13.60 8.08 84.03 0.68 -12.92 16 5 H 0.03 1.97 7.57 -2.91 -0.02 1.95 16 6 C -0.03 -1.61 4.93 84.86 0.42 -1.19 16 7 N -0.91 -51.90 11.31 21.65 0.24 -51.66 16 8 Si 0.94 46.35 29.61 68.60 2.03 48.38 16 9 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 C 0.16 6.41 2.84 44.11 0.13 6.53 16 13 H 0.09 3.40 7.84 -2.39 -0.02 3.38 16 14 C -0.12 -4.07 5.44 30.73 0.17 -3.90 16 15 C -0.12 -2.56 6.03 30.75 0.19 -2.37 16 16 C 0.11 2.30 6.32 86.56 0.55 2.84 16 17 N -0.60 -18.18 2.81 -826.28 -2.32 -20.50 16 18 C 0.12 3.36 4.51 86.38 0.39 3.75 16 19 C -0.12 -2.45 6.13 29.85 0.18 -2.26 16 20 C 0.49 10.84 8.33 71.23 0.59 11.43 16 21 O -0.55 -16.31 16.74 21.96 0.37 -15.94 16 22 O -0.51 -7.90 13.42 -51.39 -0.69 -8.59 16 23 C 0.50 20.20 6.37 87.71 0.56 20.76 16 24 O -0.58 -28.44 15.87 -3.04 -0.05 -28.48 16 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 4.06 5.31 -2.39 -0.01 4.05 16 29 H 0.04 1.62 8.01 -2.39 -0.02 1.60 16 30 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.93 7.33 -2.39 -0.02 1.91 16 33 H 0.08 1.53 8.12 -2.38 -0.02 1.51 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.05 1.90 7.09 -2.39 -0.02 1.88 16 38 H 0.10 2.34 7.97 -2.39 -0.02 2.32 16 39 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.43 3.01 9.10 -74.06 -0.67 2.33 16 Total: -1.00 -76.51 338.26 3.57 -72.94 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.36 Total: 9.99 kcal Atomic # 6 Polarization: 19.09 SS G_CDS: 5.09 Total: 24.18 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -3.54 Total: -102.47 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -0.37 Total: -53.02 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.51 3.57 -72.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411235.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.135 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds