Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47065 * 2 1 4 4 C 1.46499 * 120.00386 * 270.00069 * 3 2 1 5 5 C 1.50703 * 109.47342 * 270.00275 * 4 3 2 6 6 H 1.08001 * 119.99999 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99901 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99921 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47303 * 89.99878 * 9 7 5 11 11 H 1.48501 * 109.47556 * 210.00173 * 9 7 5 12 12 H 1.48507 * 109.46947 * 330.00120 * 9 7 5 13 13 C 1.34785 * 120.00043 * 90.00544 * 3 2 1 14 14 O 1.21280 * 119.99872 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99756 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47212 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99890 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47401 * 34.99821 * 17 16 15 19 19 C 1.50699 * 109.47121 * 274.99849 * 17 16 15 20 20 O 1.20827 * 120.00172 * 0.02562 * 19 17 16 21 21 O 1.34231 * 120.00242 * 180.02562 * 19 17 16 22 22 C 1.53000 * 109.46769 * 155.00113 * 17 16 15 23 23 C 1.53007 * 117.49549 * 248.74428 * 22 17 16 24 24 C 1.53001 * 117.49532 * 180.08732 * 22 17 16 25 25 H 1.09005 * 109.47468 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46942 * 299.99806 * 1 2 3 27 27 H 1.08999 * 109.47619 * 59.99542 * 1 2 3 28 28 H 1.09003 * 109.46942 * 240.00194 * 2 1 3 29 29 H 1.08999 * 109.47619 * 120.00458 * 2 1 3 30 30 H 1.08997 * 109.46940 * 30.00206 * 4 3 2 31 31 H 1.09001 * 109.47255 * 150.00088 * 4 3 2 32 32 H 0.97002 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47143 * 59.99836 * 15 13 3 34 34 H 1.09005 * 109.47073 * 300.00435 * 15 13 3 35 35 H 1.00898 * 110.99796 * 56.04201 * 16 15 13 36 36 H 0.96696 * 117.00233 * 180.02562 * 21 19 17 37 37 H 1.08998 * 115.55045 * 34.41602 * 22 17 16 38 38 H 1.08997 * 117.49929 * 359.97438 * 23 22 17 39 39 H 1.08997 * 117.49703 * 145.02482 * 23 22 17 40 40 H 1.09002 * 117.49861 * 214.97615 * 24 22 17 41 41 H 1.09001 * 117.50171 * 359.97343 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3898 -2.8779 8 7 5.3909 2.1827 -3.2579 9 14 3.0127 3.4354 -3.9291 10 1 3.1162 4.8557 -3.5079 11 1 3.4054 3.3123 -5.3559 12 1 1.6129 2.9695 -3.7590 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2063 3.5889 17 6 2.0748 1.5464 4.8802 18 1 2.3257 0.4888 4.7987 19 6 0.6240 1.6903 5.2619 20 8 -0.1367 2.2816 4.5327 21 8 0.1768 1.1617 6.4118 22 6 2.9511 2.1974 5.9522 23 6 4.0969 1.3640 6.5299 24 6 2.8527 1.6457 7.3759 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 5.7169 2.5733 -4.0838 33 1 2.6213 0.4185 2.5302 34 1 0.9433 1.0124 2.5299 35 1 1.7842 3.0653 3.5216 36 1 -0.7615 1.2794 6.6135 37 1 3.1159 3.2687 5.8378 38 1 4.2260 0.3518 6.1465 39 1 5.0153 1.8872 6.7959 40 1 2.9532 2.3542 8.1982 41 1 2.1633 0.8194 7.5489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605437974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -91.797977 kcal Electronic energy + Delta-G solvation = -22946.444649 eV Core-core repulsion = 19441.652207 eV Total energy + Delta-G solvation = -3504.792442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82423 -39.16392 -37.68298 -36.58650 -35.44997 -34.63104 -32.67436 -30.37654 -29.38388 -27.59390 -25.12228 -22.97442 -22.87333 -22.39554 -21.82433 -20.61298 -18.57303 -18.31933 -17.39080 -16.86353 -16.60907 -16.17410 -15.65799 -15.55777 -14.86312 -14.49850 -14.19189 -13.95989 -13.66641 -13.47350 -13.11075 -12.70520 -12.55537 -12.32244 -11.99019 -11.89552 -11.77662 -11.73550 -11.52929 -11.41197 -11.20190 -10.94996 -10.70020 -10.54982 -10.46778 -10.21626 -10.12939 -9.50940 -9.05518 -8.67229 -8.55566 -7.69535 -6.05448 -4.03859 1.89937 2.72589 3.31124 3.33838 3.37437 3.39506 3.43478 3.79789 4.14474 4.42633 4.44278 4.69417 4.78764 4.85778 4.96766 5.13115 5.18815 5.23278 5.28398 5.38055 5.49440 5.52440 5.57871 5.71978 5.73000 5.94863 5.96740 5.99897 6.15011 6.21255 6.39760 6.55565 6.77613 6.98583 7.17011 7.37942 7.61181 7.64562 8.27297 8.50463 8.96407 9.02285 9.55041 11.08002 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.003975 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.423346 B = 7043.137491 C = 7597.393999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.593 5.593 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.511 3.489 14 O -0.526 6.526 15 C 0.035 3.965 16 N -0.635 5.635 17 C 0.130 3.870 18 H 0.117 0.883 19 C 0.452 3.548 20 O -0.515 6.515 21 O -0.512 6.512 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.173 4.173 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.364 0.636 36 H 0.403 0.597 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 -6.561 19.784 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.297 3.703 14 O -0.401 6.401 15 C -0.097 4.097 16 N -0.269 5.269 17 C 0.017 3.983 18 H 0.135 0.865 19 C 0.292 3.708 20 O -0.403 6.403 21 O -0.322 6.322 22 C -0.161 4.161 23 C -0.200 4.200 24 C -0.211 4.211 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.187 0.813 36 H 0.262 0.738 37 H 0.134 0.866 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.109 -5.915 19.283 22.131 hybrid contribution -2.097 0.545 -0.599 2.248 sum -11.206 -5.370 18.684 22.439 Atomic orbital electron populations 1.22245 0.96844 1.01533 1.02284 1.21436 0.93321 0.83937 1.03078 1.47907 1.64379 1.13382 1.06932 1.19639 0.97307 0.93377 0.79989 1.21336 0.95336 1.32837 1.07054 0.90706 1.24848 0.94984 0.95803 0.97357 1.69898 1.15133 1.45055 1.23563 0.86859 0.81464 0.81676 0.79727 1.19904 1.21105 1.19121 1.20012 0.78587 0.87046 0.84682 1.90681 1.44663 1.17948 1.86850 1.22042 1.00533 0.96688 0.90436 1.60516 1.60805 1.07408 0.98146 1.21110 0.85179 1.01270 0.90786 0.86536 1.25170 0.93136 0.74502 0.78036 1.90755 1.58032 1.39729 1.51748 1.84614 1.33640 1.73298 1.40679 1.21979 1.01362 1.00141 0.92663 1.23037 0.93060 1.00938 1.03008 1.23118 1.01038 1.03860 0.93063 0.91996 0.93078 0.92143 0.89583 0.91573 0.95288 0.94622 0.92601 0.88172 0.92223 0.81280 0.73802 0.86574 0.88486 0.88358 0.88704 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.59 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 5 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.23 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.91 16 13 C 0.51 10.64 7.71 -10.98 -0.08 10.56 16 14 O -0.53 -13.27 15.78 5.56 0.09 -13.18 16 15 C 0.04 0.53 4.41 -4.98 -0.02 0.51 16 16 N -0.64 -9.30 5.73 -109.22 -0.63 -9.93 16 17 C 0.13 1.40 2.74 -68.86 -0.19 1.21 16 18 H 0.12 1.07 7.56 -51.93 -0.39 0.67 16 19 C 0.45 4.90 7.44 36.01 0.27 5.17 16 20 O -0.51 -7.38 16.06 -18.75 -0.30 -7.68 16 21 O -0.51 -3.83 11.36 -39.26 -0.45 -4.27 16 22 C -0.14 -1.39 5.44 -90.62 -0.49 -1.88 16 23 C -0.16 -1.36 10.18 -26.69 -0.27 -1.64 16 24 C -0.17 -1.32 9.45 -26.69 -0.25 -1.58 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.66 7.22 -51.93 -0.37 0.29 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 29 H 0.07 0.85 6.44 -51.93 -0.33 0.52 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.10 1.32 7.31 -51.93 -0.38 0.94 16 34 H 0.06 0.83 6.66 -51.93 -0.35 0.48 16 35 H 0.36 5.92 7.45 -39.29 -0.29 5.63 16 36 H 0.40 1.54 9.10 45.56 0.41 1.96 16 37 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.77 6.85 -51.93 -0.36 0.41 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -36.32 342.52 -6.93 -43.25 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.33 Total: 5.49 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.15 Total: 3.89 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.28 Total: -49.88 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.66 Total: -25.13 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.32 -6.93 -43.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.553 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds