Wall clock time and date at job start Tue Mar 31 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47065 * 2 1 4 4 C 1.46499 * 120.00386 * 270.00069 * 3 2 1 5 5 C 1.50703 * 109.47342 * 270.00275 * 4 3 2 6 6 H 1.08001 * 119.99999 * 0.02562 * 5 4 3 7 7 C 1.37870 * 119.99901 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99921 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47303 * 89.99878 * 9 7 5 11 11 H 1.48501 * 109.47556 * 210.00173 * 9 7 5 12 12 H 1.48507 * 109.46947 * 330.00120 * 9 7 5 13 13 C 1.34785 * 120.00043 * 90.00544 * 3 2 1 14 14 O 1.21280 * 119.99872 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99756 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47212 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99890 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47401 * 34.99821 * 17 16 15 19 19 C 1.50699 * 109.47121 * 274.99849 * 17 16 15 20 20 O 1.20827 * 120.00172 * 0.02562 * 19 17 16 21 21 O 1.34231 * 120.00242 * 180.02562 * 19 17 16 22 22 C 1.53000 * 109.46769 * 155.00113 * 17 16 15 23 23 C 1.53007 * 117.49549 * 248.74428 * 22 17 16 24 24 C 1.53001 * 117.49532 * 180.08732 * 22 17 16 25 25 H 1.09005 * 109.47468 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46942 * 299.99806 * 1 2 3 27 27 H 1.08999 * 109.47619 * 59.99542 * 1 2 3 28 28 H 1.09003 * 109.46942 * 240.00194 * 2 1 3 29 29 H 1.08999 * 109.47619 * 120.00458 * 2 1 3 30 30 H 1.08997 * 109.46940 * 30.00206 * 4 3 2 31 31 H 1.09001 * 109.47255 * 150.00088 * 4 3 2 32 32 H 0.97002 * 120.00240 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47143 * 59.99836 * 15 13 3 34 34 H 1.09005 * 109.47073 * 300.00435 * 15 13 3 35 35 H 1.00898 * 110.99796 * 56.04201 * 16 15 13 36 36 H 0.96696 * 117.00233 * 180.02562 * 21 19 17 37 37 H 1.08998 * 115.55045 * 34.41602 * 22 17 16 38 38 H 1.08997 * 117.49929 * 359.97438 * 23 22 17 39 39 H 1.08997 * 117.49703 * 145.02482 * 23 22 17 40 40 H 1.09002 * 117.49861 * 214.97615 * 24 22 17 41 41 H 1.09001 * 117.50171 * 359.97343 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2302 -1.0963 7 6 4.1490 2.3898 -2.8779 8 7 5.3909 2.1827 -3.2579 9 14 3.0127 3.4354 -3.9291 10 1 3.1162 4.8557 -3.5079 11 1 3.4054 3.3123 -5.3559 12 1 1.6129 2.9695 -3.7590 13 6 2.2430 2.0165 1.1673 14 8 2.6477 3.1598 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2063 3.5889 17 6 2.0748 1.5464 4.8802 18 1 2.3257 0.4888 4.7987 19 6 0.6240 1.6903 5.2619 20 8 -0.1367 2.2816 4.5327 21 8 0.1768 1.1617 6.4118 22 6 2.9511 2.1974 5.9522 23 6 4.0969 1.3640 6.5299 24 6 2.8527 1.6457 7.3759 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 5.7169 2.5733 -4.0838 33 1 2.6213 0.4185 2.5302 34 1 0.9433 1.0124 2.5299 35 1 1.7842 3.0653 3.5216 36 1 -0.7615 1.2794 6.6135 37 1 3.1159 3.2687 5.8378 38 1 4.2260 0.3518 6.1465 39 1 5.0153 1.8872 6.7959 40 1 2.9532 2.3542 8.1982 41 1 2.1633 0.8194 7.5489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605437974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:27 Heat of formation + Delta-G solvation = -119.846505 kcal Electronic energy + Delta-G solvation = -22947.660924 eV Core-core repulsion = 19441.652207 eV Total energy + Delta-G solvation = -3506.008717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69848 -40.70410 -38.46037 -37.39755 -37.00589 -35.72963 -34.81532 -31.96480 -30.60537 -29.18347 -26.43059 -24.42512 -23.93875 -23.30827 -22.97957 -21.42319 -19.95004 -19.23874 -19.10352 -18.43194 -17.85472 -17.30918 -16.83074 -16.60928 -16.39238 -15.87991 -15.58063 -15.01918 -14.76723 -14.64907 -14.58731 -14.26281 -13.88902 -13.62482 -13.49056 -13.26300 -13.13191 -12.65907 -12.56763 -12.48265 -12.42078 -12.26068 -12.04967 -12.02125 -11.91214 -11.73796 -11.22878 -10.94159 -10.82986 -10.66826 -9.79194 -9.41618 -8.33731 -6.38345 1.07961 1.31517 1.36047 1.44004 1.76717 1.98684 2.16387 2.30689 2.80778 3.00513 3.20502 3.62022 3.66608 3.96993 4.03958 4.06141 4.13074 4.23077 4.34828 4.39992 4.46927 4.50145 4.60689 4.78070 4.88299 4.92968 4.96511 4.98094 5.10892 5.26993 5.34750 5.38662 5.46403 5.51081 5.61226 5.70676 5.98163 6.24780 6.62793 6.69618 6.93274 7.21892 7.41489 8.83231 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.003975 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.423346 B = 7043.137491 C = 7597.393999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.226 3.774 5 C -0.534 4.534 6 H 0.031 0.969 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.273 1.273 12 H -0.240 1.240 13 C 0.498 3.502 14 O -0.582 6.582 15 C 0.052 3.948 16 N -0.654 5.654 17 C 0.131 3.869 18 H 0.140 0.860 19 C 0.462 3.538 20 O -0.554 6.554 21 O -0.497 6.497 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.153 4.153 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.351 0.649 36 H 0.423 0.577 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -8.130 21.137 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.049 0.951 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.204 1.204 11 H -0.198 1.198 12 H -0.163 1.163 13 C 0.287 3.713 14 O -0.462 6.462 15 C -0.080 4.080 16 N -0.286 5.286 17 C 0.019 3.981 18 H 0.157 0.843 19 C 0.304 3.696 20 O -0.445 6.445 21 O -0.309 6.309 22 C -0.182 4.182 23 C -0.201 4.201 24 C -0.190 4.190 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.285 0.715 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.247 -7.562 20.687 24.731 hybrid contribution -1.375 0.965 -0.885 1.898 sum -12.622 -6.597 19.803 24.393 Atomic orbital electron populations 1.22160 0.94343 1.03640 1.01733 1.21792 0.95300 0.81108 1.04251 1.48039 1.64220 1.15277 1.05687 1.19280 0.94920 0.92878 0.82538 1.21555 0.96995 1.32084 1.06661 0.95094 1.25815 0.96681 0.97144 0.98929 1.70044 1.17336 1.46567 1.24492 0.85746 0.80453 0.79013 0.77913 1.20363 1.19799 1.16333 1.21074 0.77159 0.86691 0.86405 1.90641 1.47172 1.20571 1.87835 1.21949 1.02149 0.96479 0.87417 1.60508 1.61230 1.07275 0.99631 1.21159 0.85627 1.02129 0.89177 0.84288 1.24978 0.92743 0.73670 0.78223 1.90753 1.58948 1.41609 1.53212 1.84544 1.35386 1.72186 1.38801 1.21925 1.02787 0.99503 0.93968 1.23139 0.93110 1.01031 1.02800 1.23169 1.00339 1.03699 0.91802 0.88489 0.92840 0.93486 0.90513 0.88395 0.93403 0.96735 0.92264 0.85648 0.90214 0.82769 0.71539 0.88265 0.87587 0.88316 0.87836 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -24.89 2.46 -826.15 -2.03 -26.92 16 4 C 0.23 11.35 4.23 85.63 0.36 11.71 16 5 C -0.53 -32.06 9.94 25.60 0.25 -31.81 16 6 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 7 C 0.01 0.74 5.47 84.65 0.46 1.20 16 8 N -0.94 -60.49 13.96 21.44 0.30 -60.19 16 9 Si 0.95 45.48 27.47 68.60 1.88 47.37 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 13 C 0.50 20.94 7.71 87.66 0.68 21.62 16 14 O -0.58 -30.56 15.78 -3.03 -0.05 -30.61 16 15 C 0.05 1.49 4.41 85.56 0.38 1.87 16 16 N -0.65 -18.86 5.73 -499.45 -2.86 -21.72 16 17 C 0.13 2.60 2.74 44.17 0.12 2.72 16 18 H 0.14 2.09 7.56 -2.39 -0.02 2.07 16 19 C 0.46 9.06 7.44 71.24 0.53 9.59 16 20 O -0.55 -15.22 16.06 21.96 0.35 -14.87 16 21 O -0.50 -5.85 11.36 -51.42 -0.58 -6.44 16 22 C -0.16 -2.96 5.44 -10.79 -0.06 -3.02 16 23 C -0.16 -2.41 10.18 30.62 0.31 -2.10 16 24 C -0.15 -1.94 9.45 30.62 0.29 -1.65 16 25 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.05 1.23 7.22 -2.39 -0.02 1.21 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 29 H 0.10 2.23 6.44 -2.39 -0.02 2.22 16 30 H 0.05 2.21 7.13 -2.39 -0.02 2.19 16 31 H 0.01 0.79 6.85 -2.39 -0.02 0.78 16 32 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 33 H 0.13 2.96 7.31 -2.39 -0.02 2.94 16 34 H 0.08 2.01 6.66 -2.38 -0.02 1.99 16 35 H 0.35 11.70 7.45 -89.70 -0.67 11.03 16 36 H 0.42 1.85 9.10 -74.06 -0.67 1.18 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.11 1.37 8.05 -2.39 -0.02 1.35 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 1.26 6.85 -2.39 -0.02 1.24 16 Total: -1.00 -83.24 342.52 1.25 -81.99 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.34 Total: 20.86 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.58 Total: 10.53 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.59 Total: -108.84 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -0.28 Total: -51.92 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -83.24 1.25 -81.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.854 kcal (2) G-P(sol) polarization free energy of solvation -83.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds