Wall clock time and date at job start Tue Mar 31 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99829 * 2 1 4 4 C 1.53002 * 109.47430 * 270.00385 * 3 2 1 5 5 C 1.52997 * 117.49811 * 243.62319 * 4 3 2 6 6 C 1.52993 * 117.49519 * 175.00040 * 4 3 2 7 7 C 1.34775 * 120.00464 * 180.02562 * 2 1 3 8 8 O 1.21274 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99668 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.36938 * 120.00078 * 270.00460 * 10 9 7 12 12 H 1.08001 * 120.00474 * 188.56340 * 11 10 9 13 13 C 1.38821 * 119.99830 * 8.56450 * 11 10 9 14 14 N 1.31614 * 119.99810 * 24.83843 * 13 11 10 15 15 Si 1.86801 * 119.99918 * 204.83459 * 13 11 10 16 16 H 1.48501 * 109.46877 * 89.99978 * 15 13 11 17 17 H 1.48495 * 109.47165 * 210.00013 * 15 13 11 18 18 H 1.48499 * 109.47057 * 330.00421 * 15 13 11 19 19 C 1.46499 * 120.00139 * 89.99809 * 10 9 7 20 20 C 1.52998 * 109.46824 * 92.16896 * 19 10 9 21 21 C 1.50706 * 109.46953 * 180.02562 * 20 19 10 22 22 O 1.20826 * 120.00049 * 359.97438 * 21 20 19 23 23 O 1.34230 * 119.99731 * 180.02562 * 21 20 19 24 24 H 1.09005 * 109.47201 * 269.99299 * 1 2 3 25 25 H 1.08998 * 109.47724 * 29.99305 * 1 2 3 26 26 H 1.09004 * 109.46931 * 149.99723 * 1 2 3 27 27 H 1.08994 * 109.46732 * 30.00740 * 3 2 1 28 28 H 1.09005 * 109.46683 * 150.00366 * 3 2 1 29 29 H 1.09001 * 115.54856 * 29.33093 * 4 3 2 30 30 H 1.08999 * 117.49911 * 359.97438 * 5 4 3 31 31 H 1.08994 * 117.49838 * 145.01963 * 5 4 3 32 32 H 1.08998 * 117.49669 * 214.97618 * 6 4 3 33 33 H 1.08997 * 117.50567 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.47513 * 300.00777 * 9 7 2 35 35 H 1.09007 * 109.47129 * 60.00342 * 9 7 2 36 36 H 0.97008 * 119.99882 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47300 * 212.16709 * 19 10 9 38 38 H 1.08997 * 109.47190 * 332.17250 * 19 10 9 39 39 H 1.08992 * 109.47543 * 299.99762 * 20 19 10 40 40 H 1.09002 * 109.47382 * 60.00378 * 20 19 10 41 41 H 0.96708 * 116.99531 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.9073 1.7990 -1.9076 6 6 3.1050 3.0776 -1.6577 7 6 2.1389 -1.1671 -0.0005 8 8 3.3517 -1.1671 -0.0010 9 6 1.3855 -2.4722 -0.0005 10 7 2.3374 -3.5858 -0.0005 11 6 2.7824 -4.1062 -1.1864 12 1 3.3725 -5.0107 -1.1917 13 6 2.4751 -3.4710 -2.3819 14 7 2.2091 -2.1820 -2.3928 15 14 2.4392 -4.4456 -3.9751 16 1 1.0724 -4.9824 -4.1963 17 1 2.8118 -3.5588 -5.1064 18 1 3.4048 -5.5706 -3.8890 19 6 2.8134 -4.1425 1.2682 20 6 1.9142 -5.3089 1.6825 21 6 2.4035 -5.8813 2.9880 22 8 3.3723 -5.4055 3.5309 23 8 1.7635 -6.9204 3.5470 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 1.7094 1.3872 -2.1715 30 1 4.6828 1.5428 -1.1858 31 1 4.1217 1.5336 -2.9427 32 1 2.7916 3.6533 -2.5286 33 1 3.3531 3.6620 -0.7717 34 1 0.7590 -2.5302 0.8896 35 1 0.7585 -2.5298 -0.8904 36 1 1.9947 -1.7381 -3.2283 37 1 3.8369 -4.4978 1.1479 38 1 2.7847 -3.3707 2.0372 39 1 0.8908 -4.9538 1.8029 40 1 1.9429 -6.0809 0.9135 41 1 2.1142 -7.2528 4.3847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606096885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:11 Heat of formation + Delta-G solvation = -67.614172 kcal Electronic energy + Delta-G solvation = -23458.132940 eV Core-core repulsion = 19954.389187 eV Total energy + Delta-G solvation = -3503.743753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.89276 -38.72574 -36.82184 -35.97900 -35.30595 -33.95205 -32.10364 -29.92050 -28.16427 -26.47327 -24.93668 -24.62553 -21.92172 -21.79824 -20.39274 -19.95553 -18.41129 -17.80939 -16.70189 -16.25856 -15.83670 -15.64245 -15.36926 -15.02909 -14.51681 -14.16236 -13.69069 -13.35461 -13.16053 -12.99104 -12.49155 -12.34113 -11.99988 -11.91072 -11.64117 -11.45200 -11.28833 -11.17342 -11.12283 -11.06889 -10.85432 -10.44522 -10.28645 -10.20324 -10.01461 -9.92324 -9.84984 -9.43765 -8.79220 -8.20145 -7.64578 -6.98188 -5.82727 -3.10451 2.55066 3.35311 3.39653 3.46916 3.47728 3.91693 4.31229 4.35006 4.54593 5.19987 5.31518 5.33837 5.38486 5.46187 5.57375 5.67232 5.71011 5.86251 5.89110 5.93077 5.95328 5.99350 6.16162 6.21193 6.24087 6.34696 6.41068 6.53851 6.56381 6.62153 6.71822 6.77944 6.97331 7.11995 7.54179 7.76292 8.17049 8.23025 8.58417 9.12243 9.70820 9.86829 10.21972 11.26065 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.005831 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.917156 B = 4800.471863 C = 6130.100819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.633 5.633 3 C 0.155 3.845 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.194 4.194 7 C 0.533 3.467 8 O -0.524 6.524 9 C 0.164 3.836 10 N -0.571 5.571 11 C -0.254 4.254 12 H 0.079 0.921 13 C 0.003 3.997 14 N -0.888 5.888 15 Si 0.901 3.099 16 H -0.289 1.289 17 H -0.295 1.295 18 H -0.281 1.281 19 C 0.165 3.835 20 C -0.133 4.133 21 C 0.479 3.521 22 O -0.521 6.521 23 O -0.525 6.525 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.105 0.895 36 H 0.252 0.748 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.362 2.777 6.322 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.370 5.370 3 C 0.031 3.969 4 C -0.168 4.168 5 C -0.196 4.196 6 C -0.232 4.232 7 C 0.321 3.679 8 O -0.397 6.397 9 C 0.034 3.966 10 N -0.289 5.289 11 C -0.382 4.382 12 H 0.097 0.903 13 C -0.195 4.195 14 N -0.533 5.533 15 Si 0.731 3.269 16 H -0.216 1.216 17 H -0.222 1.222 18 H -0.207 1.207 19 C 0.037 3.963 20 C -0.174 4.174 21 C 0.322 3.678 22 O -0.410 6.410 23 O -0.337 6.337 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.053 0.947 35 H 0.123 0.877 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.124 0.876 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.578 3.103 5.934 8.716 hybrid contribution 0.174 -0.491 -0.641 0.825 sum -5.405 2.612 5.294 8.004 Atomic orbital electron populations 1.21517 0.81427 1.02400 0.99855 1.48064 1.05635 1.05769 1.77571 1.20708 0.97291 0.85598 0.93353 1.22677 0.96932 0.98002 0.99200 1.22802 0.95042 0.99670 1.02125 1.22949 1.06629 0.91020 1.02563 1.21927 0.88814 0.84694 0.72450 1.90505 1.14657 1.86421 1.48103 1.20784 0.91378 0.84681 0.99800 1.43901 1.49443 1.34359 1.01227 1.19235 1.30611 1.05459 0.82926 0.90339 1.24698 1.02123 0.95088 0.97555 1.69946 1.51199 1.06469 1.25657 0.86294 0.77693 0.79457 0.83445 1.21619 1.22157 1.20668 1.20465 0.95254 0.92277 0.88325 1.22340 1.03341 1.01773 0.89911 1.24134 0.80372 0.76248 0.87092 1.90693 1.26999 1.59626 1.63635 1.84624 1.59363 1.48279 1.41403 0.94322 0.92686 0.91144 0.92119 0.90873 0.88047 0.88988 0.89560 0.89609 0.89448 0.94721 0.87739 0.93711 0.92457 0.93493 0.88526 0.87590 0.74236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.24 59.84 0.61 1.96 16 2 N -0.63 -11.97 2.87 -181.57 -0.52 -12.50 16 3 C 0.15 2.67 5.69 -4.04 -0.02 2.65 16 4 C -0.15 -2.55 6.01 -90.62 -0.54 -3.10 16 5 C -0.16 -2.80 10.18 -26.73 -0.27 -3.07 16 6 C -0.19 -2.74 10.25 -26.73 -0.27 -3.02 16 7 C 0.53 12.39 5.73 -10.99 -0.06 12.32 16 8 O -0.52 -14.51 15.73 5.56 0.09 -14.42 16 9 C 0.16 3.63 3.97 -5.20 -0.02 3.60 16 10 N -0.57 -13.61 2.02 -174.61 -0.35 -13.96 16 11 C -0.25 -6.67 9.70 -15.06 -0.15 -6.82 16 12 H 0.08 2.05 7.94 -52.49 -0.42 1.63 16 13 C 0.00 0.09 4.90 -17.43 -0.09 0.01 16 14 N -0.89 -24.00 8.96 55.49 0.50 -23.51 16 15 Si 0.90 21.22 29.62 -169.99 -5.04 16.19 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 19 C 0.16 3.45 4.96 -4.04 -0.02 3.43 16 20 C -0.13 -2.20 6.13 -27.88 -0.17 -2.37 16 21 C 0.48 7.53 8.33 36.01 0.30 7.83 16 22 O -0.52 -9.81 16.74 -18.75 -0.31 -10.12 16 23 O -0.53 -6.45 13.42 -39.26 -0.53 -6.98 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.07 1.07 6.44 -51.93 -0.33 0.73 16 27 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.07 1.41 7.16 -51.93 -0.37 1.04 16 29 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 30 H 0.09 1.71 8.03 -51.93 -0.42 1.29 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.10 2.46 5.56 -51.93 -0.29 2.17 16 36 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.06 1.29 8.02 -51.93 -0.42 0.88 16 38 H 0.05 1.00 8.01 -51.93 -0.42 0.58 16 39 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.40 3.08 9.10 45.56 0.41 3.50 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -33.11 346.53 -7.25 -40.36 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.60 Total: 6.28 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -0.71 Total: 13.43 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.38 Total: -49.96 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.75 Total: -31.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.04 Total: 16.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.11 -7.25 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606096885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.259 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds