Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46507 * 119.99829 * 2 1 4 4 C 1.53002 * 109.47430 * 270.00385 * 3 2 1 5 5 C 1.52997 * 117.49811 * 243.62319 * 4 3 2 6 6 C 1.52993 * 117.49519 * 175.00040 * 4 3 2 7 7 C 1.34775 * 120.00464 * 180.02562 * 2 1 3 8 8 O 1.21274 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99668 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.36938 * 120.00078 * 270.00460 * 10 9 7 12 12 H 1.08001 * 120.00474 * 188.56340 * 11 10 9 13 13 C 1.38821 * 119.99830 * 8.56450 * 11 10 9 14 14 N 1.31614 * 119.99810 * 24.83843 * 13 11 10 15 15 Si 1.86801 * 119.99918 * 204.83459 * 13 11 10 16 16 H 1.48501 * 109.46877 * 89.99978 * 15 13 11 17 17 H 1.48495 * 109.47165 * 210.00013 * 15 13 11 18 18 H 1.48499 * 109.47057 * 330.00421 * 15 13 11 19 19 C 1.46499 * 120.00139 * 89.99809 * 10 9 7 20 20 C 1.52998 * 109.46824 * 92.16896 * 19 10 9 21 21 C 1.50706 * 109.46953 * 180.02562 * 20 19 10 22 22 O 1.20826 * 120.00049 * 359.97438 * 21 20 19 23 23 O 1.34230 * 119.99731 * 180.02562 * 21 20 19 24 24 H 1.09005 * 109.47201 * 269.99299 * 1 2 3 25 25 H 1.08998 * 109.47724 * 29.99305 * 1 2 3 26 26 H 1.09004 * 109.46931 * 149.99723 * 1 2 3 27 27 H 1.08994 * 109.46732 * 30.00740 * 3 2 1 28 28 H 1.09005 * 109.46683 * 150.00366 * 3 2 1 29 29 H 1.09001 * 115.54856 * 29.33093 * 4 3 2 30 30 H 1.08999 * 117.49911 * 359.97438 * 5 4 3 31 31 H 1.08994 * 117.49838 * 145.01963 * 5 4 3 32 32 H 1.08998 * 117.49669 * 214.97618 * 6 4 3 33 33 H 1.08997 * 117.50567 * 0.02562 * 6 4 3 34 34 H 1.08999 * 109.47513 * 300.00777 * 9 7 2 35 35 H 1.09007 * 109.47129 * 60.00342 * 9 7 2 36 36 H 0.97008 * 119.99882 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.47300 * 212.16709 * 19 10 9 38 38 H 1.08997 * 109.47190 * 332.17250 * 19 10 9 39 39 H 1.08992 * 109.47543 * 299.99762 * 20 19 10 40 40 H 1.09002 * 109.47382 * 60.00378 * 20 19 10 41 41 H 0.96708 * 116.99531 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 6 3.9073 1.7990 -1.9076 6 6 3.1050 3.0776 -1.6577 7 6 2.1389 -1.1671 -0.0005 8 8 3.3517 -1.1671 -0.0010 9 6 1.3855 -2.4722 -0.0005 10 7 2.3374 -3.5858 -0.0005 11 6 2.7824 -4.1062 -1.1864 12 1 3.3725 -5.0107 -1.1917 13 6 2.4751 -3.4710 -2.3819 14 7 2.2091 -2.1820 -2.3928 15 14 2.4392 -4.4456 -3.9751 16 1 1.0724 -4.9824 -4.1963 17 1 2.8118 -3.5588 -5.1064 18 1 3.4048 -5.5706 -3.8890 19 6 2.8134 -4.1425 1.2682 20 6 1.9142 -5.3089 1.6825 21 6 2.4035 -5.8813 2.9880 22 8 3.3723 -5.4055 3.5309 23 8 1.7635 -6.9204 3.5470 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0283 0.5139 28 1 3.1499 1.1384 0.5138 29 1 1.7094 1.3872 -2.1715 30 1 4.6828 1.5428 -1.1858 31 1 4.1217 1.5336 -2.9427 32 1 2.7916 3.6533 -2.5286 33 1 3.3531 3.6620 -0.7717 34 1 0.7590 -2.5302 0.8896 35 1 0.7585 -2.5298 -0.8904 36 1 1.9947 -1.7381 -3.2283 37 1 3.8369 -4.4978 1.1479 38 1 2.7847 -3.3707 2.0372 39 1 0.8908 -4.9538 1.8029 40 1 1.9429 -6.0809 0.9135 41 1 2.1142 -7.2528 4.3847 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606096885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = -89.200432 kcal Electronic energy + Delta-G solvation = -23459.068991 eV Core-core repulsion = 19954.389187 eV Total energy + Delta-G solvation = -3504.679804 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16445 -40.35782 -38.29651 -37.30736 -36.85590 -35.56871 -33.90802 -31.60613 -29.69689 -27.99658 -26.63358 -26.13055 -23.42620 -23.16483 -21.78615 -21.44468 -20.05128 -19.05894 -18.48928 -17.76740 -17.32648 -16.98351 -16.84695 -16.70950 -16.10638 -15.71627 -15.34843 -14.96463 -14.56507 -14.45084 -14.03476 -13.83985 -13.47581 -13.31357 -13.20873 -13.01855 -12.78829 -12.74548 -12.53654 -12.47934 -12.35064 -12.23191 -11.99611 -11.84072 -11.73031 -11.55067 -11.29853 -10.77074 -10.68913 -10.10338 -9.17188 -8.85984 -7.82139 -5.10734 1.29461 1.49919 1.52270 1.59045 2.17361 2.41836 2.55945 2.73258 3.01822 3.32653 3.70531 3.88075 4.02552 4.12795 4.19831 4.21533 4.41549 4.51666 4.58510 4.62250 4.70435 4.74308 4.77855 4.79959 4.97116 4.98743 5.00678 5.05141 5.05975 5.25260 5.28119 5.36587 5.38608 5.68317 5.71477 6.10521 6.28406 6.93966 7.09252 7.18901 7.82767 8.10078 8.28534 9.23137 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.005831 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.917156 B = 4800.471863 C = 6130.100819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.632 5.632 3 C 0.155 3.845 4 C -0.161 4.161 5 C -0.190 4.190 6 C -0.146 4.146 7 C 0.528 3.472 8 O -0.583 6.583 9 C 0.166 3.834 10 N -0.585 5.585 11 C -0.262 4.262 12 H 0.072 0.928 13 C -0.041 4.041 14 N -0.902 5.902 15 Si 0.959 3.041 16 H -0.278 1.278 17 H -0.308 1.308 18 H -0.281 1.281 19 C 0.169 3.831 20 C -0.120 4.120 21 C 0.492 3.508 22 O -0.558 6.558 23 O -0.510 6.510 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.244 0.756 37 H 0.028 0.972 38 H 0.038 0.962 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.584 3.163 7.089 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.368 5.368 3 C 0.031 3.969 4 C -0.181 4.181 5 C -0.228 4.228 6 C -0.183 4.183 7 C 0.317 3.683 8 O -0.460 6.460 9 C 0.037 3.963 10 N -0.304 5.304 11 C -0.392 4.392 12 H 0.090 0.910 13 C -0.237 4.237 14 N -0.547 5.547 15 Si 0.789 3.211 16 H -0.205 1.205 17 H -0.236 1.236 18 H -0.206 1.206 19 C 0.042 3.958 20 C -0.160 4.160 21 C 0.336 3.664 22 O -0.449 6.449 23 O -0.324 6.324 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -7.868 3.472 6.743 10.929 hybrid contribution 0.862 -0.616 -0.799 1.327 sum -7.006 2.856 5.944 9.622 Atomic orbital electron populations 1.21769 0.78519 1.03272 1.02005 1.48050 1.07567 1.05257 1.75919 1.20821 0.96722 0.85744 0.93598 1.22616 0.95830 1.00934 0.98679 1.22737 0.95258 1.03902 1.00868 1.23031 1.01964 0.89335 1.04001 1.22094 0.88189 0.86254 0.71745 1.90473 1.17016 1.87487 1.51067 1.20795 0.91082 0.83888 1.00575 1.44077 1.49799 1.35217 1.01324 1.19402 1.30389 1.05207 0.84201 0.91036 1.25305 1.02748 0.95837 0.99837 1.70114 1.52098 1.07161 1.25330 0.85391 0.77910 0.77872 0.79889 1.20467 1.23608 1.20623 1.20384 0.94863 0.93404 0.87170 1.21954 1.03168 1.00130 0.90739 1.23720 0.79595 0.76469 0.86571 1.90701 1.28602 1.61010 1.64592 1.84534 1.58472 1.46597 1.42760 0.91346 0.90300 0.91912 0.88001 0.93589 0.89480 0.91006 0.90907 0.87406 0.87134 0.91378 0.89070 0.94678 0.95302 0.94389 0.86208 0.87146 0.71415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.33 10.24 127.77 1.31 3.64 16 2 N -0.63 -23.48 2.87 -846.75 -2.43 -25.91 16 3 C 0.15 5.21 5.69 86.38 0.49 5.70 16 4 C -0.16 -5.45 6.01 -10.80 -0.06 -5.51 16 5 C -0.19 -6.87 10.18 30.59 0.31 -6.56 16 6 C -0.15 -3.80 10.25 30.59 0.31 -3.49 16 7 C 0.53 24.92 5.73 87.66 0.50 25.42 16 8 O -0.58 -33.62 15.73 -3.01 -0.05 -33.67 16 9 C 0.17 7.36 3.97 85.63 0.34 7.70 16 10 N -0.58 -28.27 2.02 -706.34 -1.43 -29.69 16 11 C -0.26 -14.08 9.70 84.04 0.82 -13.26 16 12 H 0.07 3.83 7.94 -2.91 -0.02 3.81 16 13 C -0.04 -2.21 4.90 84.86 0.42 -1.80 16 14 N -0.90 -49.90 8.96 21.65 0.19 -49.71 16 15 Si 0.96 44.39 29.62 68.60 2.03 46.42 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 C 0.17 7.18 4.96 86.38 0.43 7.60 16 20 C -0.12 -3.81 6.13 29.85 0.18 -3.63 16 21 C 0.49 14.67 8.33 71.24 0.59 15.27 16 22 O -0.56 -20.70 16.74 21.96 0.37 -20.33 16 23 O -0.51 -10.99 13.42 -51.41 -0.69 -11.68 16 24 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.08 1.75 8.07 -2.39 -0.02 1.73 16 26 H 0.06 1.80 6.44 -2.39 -0.02 1.78 16 27 H 0.10 2.56 8.07 -2.39 -0.02 2.54 16 28 H 0.05 1.80 7.16 -2.38 -0.02 1.79 16 29 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 31 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 35 H 0.09 4.30 5.56 -2.38 -0.01 4.28 16 36 H 0.24 13.47 8.31 -92.70 -0.77 12.70 16 37 H 0.03 1.35 8.02 -2.39 -0.02 1.34 16 38 H 0.04 1.65 8.01 -2.39 -0.02 1.63 16 39 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.42 5.16 9.10 -74.05 -0.67 4.48 16 Total: -1.00 -75.12 346.53 3.99 -71.13 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.36 Total: 22.35 kcal Atomic # 6 Polarization: 25.45 SS G_CDS: 5.64 Total: 31.09 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.67 Total: -105.31 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -0.37 Total: -65.68 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.12 3.99 -71.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606096885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.068 kcal (2) G-P(sol) polarization free energy of solvation -75.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds