Wall clock time and date at job start Tue Mar 31 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44760 * 111.00179 * 2 1 4 4 C 1.54030 * 109.68238 * 217.85545 * 3 2 1 5 5 N 1.47777 * 111.55420 * 320.00260 * 4 3 2 6 6 C 1.34777 * 118.54507 * 138.10863 * 5 4 3 7 7 O 1.21279 * 120.00166 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00137 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47303 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.44677 * 122.91012 * 318.38845 * 5 4 3 19 19 C 1.54398 * 109.83189 * 88.91431 * 18 5 4 20 20 H 1.08997 * 109.37450 * 50.60308 * 19 18 5 21 21 C 1.50702 * 109.45619 * 170.47875 * 19 18 5 22 22 O 1.20825 * 119.99577 * 0.26250 * 21 19 18 23 23 O 1.34227 * 119.99981 * 180.25623 * 21 19 18 24 24 C 1.46258 * 111.00150 * 123.48174 * 2 1 3 25 25 H 1.09006 * 109.46905 * 56.04630 * 1 2 3 26 26 H 1.09003 * 109.47109 * 176.04488 * 1 2 3 27 27 H 1.08996 * 109.47317 * 296.04494 * 1 2 3 28 28 H 1.08996 * 109.43731 * 97.78374 * 3 2 1 29 29 H 1.09009 * 109.40116 * 337.89720 * 3 2 1 30 30 H 1.08999 * 109.05782 * 199.46783 * 4 3 2 31 31 H 1.09002 * 109.00833 * 80.50190 * 4 3 2 32 32 H 1.09004 * 109.47476 * 59.99658 * 8 6 5 33 33 H 1.08996 * 109.47197 * 300.00015 * 8 6 5 34 34 H 1.09000 * 109.46986 * 60.00149 * 9 8 6 35 35 H 1.08993 * 109.47662 * 299.99926 * 9 8 6 36 36 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.46198 * 208.81484 * 18 5 4 38 38 H 1.09000 * 109.46078 * 328.77940 * 18 5 4 39 39 H 0.96695 * 117.00069 * 180.02562 * 23 21 19 40 40 H 1.08999 * 108.50250 * 269.82181 * 24 2 1 41 41 H 1.09010 * 108.50142 * 27.43458 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9878 1.3514 0.0000 4 6 3.2428 1.4253 -0.8900 5 7 4.0973 0.2312 -0.7238 6 6 4.6482 -0.3243 -1.8213 7 8 5.3536 -1.3052 -1.7154 8 6 4.3877 0.2734 -3.1799 9 6 5.1249 -0.5408 -4.2451 10 6 4.8639 0.0565 -5.6039 11 1 4.2354 0.9298 -5.6982 12 6 5.4274 -0.5119 -6.7266 13 7 5.2000 0.0097 -7.9122 14 14 6.5137 -2.0227 -6.5636 15 1 7.9244 -1.5999 -6.3735 16 1 6.0750 -2.8238 -5.3926 17 1 6.4052 -2.8456 -7.7949 18 6 4.3640 -0.3715 0.5641 19 6 3.2816 -1.4252 0.8836 20 1 3.1756 -2.1029 0.0366 21 6 3.6889 -2.2088 2.1047 22 8 4.7278 -1.9546 2.6668 23 8 2.8976 -3.1891 2.5678 24 6 1.9932 -0.7533 1.1388 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 -0.3634 0.4512 0.9233 28 1 2.2478 1.6402 1.0184 29 1 1.2282 2.0309 -0.3869 30 1 3.8161 2.3133 -0.6238 31 1 2.9345 1.5002 -1.9329 32 1 4.7449 1.3031 -3.1985 33 1 3.3174 0.2563 -3.3852 34 1 4.7681 -1.5706 -4.2267 35 1 6.1952 -0.5235 -4.0397 36 1 5.5967 -0.3899 -8.7021 37 1 5.3406 -0.8552 0.5435 38 1 4.3572 0.3998 1.3344 39 1 3.2007 -3.6635 3.3540 40 1 2.1201 -0.0687 1.9775 41 1 1.2606 -1.5101 1.4197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606228644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:04 Heat of formation + Delta-G solvation = -114.033278 kcal Electronic energy + Delta-G solvation = -23435.965035 eV Core-core repulsion = 19930.208399 eV Total energy + Delta-G solvation = -3505.756637 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02357 -39.73571 -38.20117 -36.42154 -34.91729 -33.89216 -33.25103 -31.19050 -29.35737 -27.32887 -26.08723 -25.12697 -23.64521 -21.70856 -21.08414 -20.37603 -18.55794 -18.25250 -17.32553 -17.26061 -16.45403 -16.13435 -15.86064 -15.25952 -15.14077 -14.72699 -14.35264 -14.05611 -13.75334 -13.67212 -13.30649 -12.90202 -12.79890 -12.52768 -12.31635 -12.22188 -11.92169 -11.76986 -11.59231 -11.26616 -11.16626 -11.04854 -10.90538 -10.73218 -10.04621 -9.98378 -9.73727 -9.19077 -9.10919 -8.65305 -8.49804 -8.45283 -5.99377 -3.97477 1.95574 2.57040 3.16308 3.36667 3.41363 3.47781 3.59441 3.64021 4.36500 4.54891 4.61325 4.66288 4.78106 4.96891 5.00653 5.06460 5.17755 5.21063 5.34848 5.36583 5.38110 5.44673 5.55348 5.63986 5.71212 5.75648 5.92982 6.12482 6.17059 6.24003 6.67768 6.73133 6.78088 6.83181 7.42458 7.49664 7.61795 7.63890 7.83896 8.53750 8.68394 9.03975 9.64296 11.13523 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.004480 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.476412 B = 6247.886485 C = 7028.104754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.534 5.534 3 C 0.040 3.960 4 C 0.113 3.887 5 N -0.606 5.606 6 C 0.512 3.488 7 O -0.539 6.539 8 C -0.120 4.120 9 C 0.001 3.999 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.905 5.905 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.261 1.261 17 H -0.289 1.289 18 C 0.138 3.862 19 C -0.096 4.096 20 H 0.123 0.877 21 C 0.493 3.507 22 O -0.510 6.510 23 O -0.516 6.516 24 C 0.068 3.932 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.409 0.591 40 H 0.040 0.960 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 1.285 22.477 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.257 5.257 3 C -0.090 4.090 4 C -0.010 4.010 5 N -0.340 5.340 6 C 0.302 3.698 7 O -0.415 6.415 8 C -0.159 4.159 9 C -0.037 4.037 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.544 5.544 14 Si 0.703 3.297 15 H -0.203 1.203 16 H -0.185 1.185 17 H -0.215 1.215 18 C 0.013 3.987 19 C -0.118 4.118 20 H 0.140 0.860 21 C 0.334 3.666 22 O -0.397 6.397 23 O -0.327 6.327 24 C -0.060 4.060 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.268 0.732 40 H 0.059 0.941 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.952 0.816 21.722 23.907 hybrid contribution 0.395 -0.707 1.252 1.491 sum -9.557 0.109 22.974 24.882 Atomic orbital electron populations 1.22479 0.85907 1.02772 1.00594 1.60638 1.08053 1.13891 1.43104 1.22483 0.97388 0.89680 0.99408 1.22130 0.90046 0.86776 1.02050 1.47672 1.49966 1.30137 1.06216 1.21599 0.78116 0.83280 0.86781 1.90648 1.38025 1.26242 1.86596 1.21683 1.02905 1.01184 0.90169 1.19380 0.95589 0.95718 0.93013 1.21115 1.31157 1.14355 0.89386 0.90955 1.24960 0.96054 0.97010 0.95174 1.69915 1.45163 1.41150 0.98159 0.86810 0.81317 0.83785 0.77738 1.20276 1.18520 1.21505 1.20959 0.97759 0.94350 0.85604 1.20775 0.98176 0.98275 0.94529 0.85957 1.23208 0.81184 0.77713 0.84506 1.90731 1.24568 1.66443 1.58000 1.84544 1.52637 1.47323 1.48243 1.20821 0.95567 0.98160 0.91477 0.90668 0.91073 0.95626 0.93586 0.89628 0.91431 0.88529 0.89819 0.89354 0.95877 0.96367 0.92781 0.88644 0.90745 0.73171 0.94140 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.17 60.06 0.55 0.78 16 2 N -0.53 -5.17 4.41 -247.92 -1.09 -6.27 16 3 C 0.04 0.33 5.52 -4.44 -0.02 0.31 16 4 C 0.11 1.20 6.30 -2.80 -0.02 1.18 16 5 N -0.61 -8.58 2.55 -172.57 -0.44 -9.02 16 6 C 0.51 9.57 7.62 -10.99 -0.08 9.48 16 7 O -0.54 -12.16 15.38 5.56 0.09 -12.08 16 8 C -0.12 -2.35 3.97 -27.88 -0.11 -2.46 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 10 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.74 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 14 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 17 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 18 C 0.14 1.83 4.14 -4.28 -0.02 1.82 16 19 C -0.10 -1.14 2.78 -93.67 -0.26 -1.40 16 20 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 21 C 0.49 5.65 7.60 36.01 0.27 5.92 16 22 O -0.51 -7.23 16.59 -18.75 -0.31 -7.54 16 23 O -0.52 -4.39 13.13 -39.25 -0.52 -4.91 16 24 C 0.07 0.64 4.17 -6.81 -0.03 0.62 16 25 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 26 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 27 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.05 0.35 7.14 -51.93 -0.37 -0.02 16 29 H 0.09 0.57 7.52 -51.92 -0.39 0.18 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.07 5.83 -51.93 -0.30 0.76 16 32 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 33 H 0.09 1.62 7.40 -51.93 -0.38 1.23 16 34 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 35 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.10 1.53 6.89 -51.93 -0.36 1.18 16 38 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.41 1.70 9.10 45.56 0.41 2.12 16 40 H 0.04 0.35 7.18 -51.93 -0.37 -0.02 16 41 H 0.08 0.69 7.35 -51.92 -0.38 0.31 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -36.38 329.91 -6.87 -43.25 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.43 Total: -2.04 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.24 Total: 2.82 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.76 Total: -42.66 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.74 Total: -24.53 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.38 -6.87 -43.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606228644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.780 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds