Wall clock time and date at job start Tue Mar 31 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.44760 * 111.00179 * 2 1 4 4 C 1.54030 * 109.68238 * 217.85545 * 3 2 1 5 5 N 1.47777 * 111.55420 * 320.00260 * 4 3 2 6 6 C 1.34777 * 118.54507 * 138.10863 * 5 4 3 7 7 O 1.21279 * 120.00166 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00137 * 0.02562 * 6 5 4 9 9 C 1.53002 * 109.47303 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.46931 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.44677 * 122.91012 * 318.38845 * 5 4 3 19 19 C 1.54398 * 109.83189 * 88.91431 * 18 5 4 20 20 H 1.08997 * 109.37450 * 50.60308 * 19 18 5 21 21 C 1.50702 * 109.45619 * 170.47875 * 19 18 5 22 22 O 1.20825 * 119.99577 * 0.26250 * 21 19 18 23 23 O 1.34227 * 119.99981 * 180.25623 * 21 19 18 24 24 C 1.46258 * 111.00150 * 123.48174 * 2 1 3 25 25 H 1.09006 * 109.46905 * 56.04630 * 1 2 3 26 26 H 1.09003 * 109.47109 * 176.04488 * 1 2 3 27 27 H 1.08996 * 109.47317 * 296.04494 * 1 2 3 28 28 H 1.08996 * 109.43731 * 97.78374 * 3 2 1 29 29 H 1.09009 * 109.40116 * 337.89720 * 3 2 1 30 30 H 1.08999 * 109.05782 * 199.46783 * 4 3 2 31 31 H 1.09002 * 109.00833 * 80.50190 * 4 3 2 32 32 H 1.09004 * 109.47476 * 59.99658 * 8 6 5 33 33 H 1.08996 * 109.47197 * 300.00015 * 8 6 5 34 34 H 1.09000 * 109.46986 * 60.00149 * 9 8 6 35 35 H 1.08993 * 109.47662 * 299.99926 * 9 8 6 36 36 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.46198 * 208.81484 * 18 5 4 38 38 H 1.09000 * 109.46078 * 328.77940 * 18 5 4 39 39 H 0.96695 * 117.00069 * 180.02562 * 23 21 19 40 40 H 1.08999 * 108.50250 * 269.82181 * 24 2 1 41 41 H 1.09010 * 108.50142 * 27.43458 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9878 1.3514 0.0000 4 6 3.2428 1.4253 -0.8900 5 7 4.0973 0.2312 -0.7238 6 6 4.6482 -0.3243 -1.8213 7 8 5.3536 -1.3052 -1.7154 8 6 4.3877 0.2734 -3.1799 9 6 5.1249 -0.5408 -4.2451 10 6 4.8639 0.0565 -5.6039 11 1 4.2354 0.9298 -5.6982 12 6 5.4274 -0.5119 -6.7266 13 7 5.2000 0.0097 -7.9122 14 14 6.5137 -2.0227 -6.5636 15 1 7.9244 -1.5999 -6.3735 16 1 6.0750 -2.8238 -5.3926 17 1 6.4052 -2.8456 -7.7949 18 6 4.3640 -0.3715 0.5641 19 6 3.2816 -1.4252 0.8836 20 1 3.1756 -2.1029 0.0366 21 6 3.6889 -2.2088 2.1047 22 8 4.7278 -1.9546 2.6668 23 8 2.8976 -3.1891 2.5678 24 6 1.9932 -0.7533 1.1388 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 -0.3634 0.4512 0.9233 28 1 2.2478 1.6402 1.0184 29 1 1.2282 2.0309 -0.3869 30 1 3.8161 2.3133 -0.6238 31 1 2.9345 1.5002 -1.9329 32 1 4.7449 1.3031 -3.1985 33 1 3.3174 0.2563 -3.3852 34 1 4.7681 -1.5706 -4.2267 35 1 6.1952 -0.5235 -4.0397 36 1 5.5967 -0.3899 -8.7021 37 1 5.3406 -0.8552 0.5435 38 1 4.3572 0.3998 1.3344 39 1 3.2007 -3.6635 3.3540 40 1 2.1201 -0.0687 1.9775 41 1 1.2606 -1.5101 1.4197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606228644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:04 Heat of formation + Delta-G solvation = -141.863998 kcal Electronic energy + Delta-G solvation = -23437.171866 eV Core-core repulsion = 19930.208399 eV Total energy + Delta-G solvation = -3506.963467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.98574 -40.87495 -39.21005 -37.26084 -36.05556 -35.59725 -34.58343 -33.15706 -30.17667 -28.83250 -27.02696 -26.36611 -24.63763 -23.10784 -22.17770 -21.49544 -19.82510 -19.22416 -19.07929 -18.18453 -17.87064 -17.24986 -16.84353 -16.49033 -16.21036 -16.00502 -15.78111 -15.23508 -14.85291 -14.71891 -14.59447 -14.40434 -13.93860 -13.78341 -13.62890 -13.36349 -12.98742 -12.89284 -12.65906 -12.62862 -12.37978 -12.06630 -12.02790 -11.89657 -11.77862 -11.73777 -11.66526 -11.35369 -10.76141 -10.70341 -9.66273 -9.29320 -8.29851 -6.31702 1.05780 1.33161 1.35174 1.50596 1.57965 1.81728 2.31411 2.36208 2.95893 3.06121 3.47139 3.67204 3.87805 3.99639 4.02264 4.24988 4.31027 4.34511 4.39543 4.44178 4.50142 4.62541 4.66294 4.78216 4.79367 4.82113 4.87850 4.91206 5.08305 5.12688 5.36250 5.46897 5.49938 5.62685 5.68102 6.06723 6.15210 6.25746 6.38244 6.74188 6.89313 7.26934 7.33557 8.85786 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.004480 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.476412 B = 6247.886485 C = 7028.104754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.558 5.558 3 C 0.044 3.956 4 C 0.102 3.898 5 N -0.592 5.592 6 C 0.511 3.489 7 O -0.588 6.588 8 C -0.110 4.110 9 C 0.005 3.995 10 C -0.524 4.524 11 H 0.053 0.947 12 C 0.017 3.983 13 N -0.943 5.943 14 Si 0.934 3.066 15 H -0.269 1.269 16 H -0.265 1.265 17 H -0.277 1.277 18 C 0.138 3.862 19 C -0.091 4.091 20 H 0.097 0.903 21 C 0.502 3.498 22 O -0.541 6.541 23 O -0.506 6.506 24 C 0.072 3.928 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.006 0.994 35 H 0.005 0.995 36 H 0.267 0.733 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.430 0.570 40 H 0.056 0.944 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 1.791 24.431 27.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.282 5.282 3 C -0.085 4.085 4 C -0.020 4.020 5 N -0.323 5.323 6 C 0.301 3.699 7 O -0.469 6.469 8 C -0.149 4.149 9 C -0.033 4.033 10 C -0.562 4.562 11 H 0.071 0.929 12 C -0.181 4.181 13 N -0.583 5.583 14 Si 0.759 3.241 15 H -0.195 1.195 16 H -0.189 1.189 17 H -0.203 1.203 18 C 0.014 3.986 19 C -0.112 4.112 20 H 0.115 0.885 21 C 0.344 3.656 22 O -0.431 6.431 23 O -0.320 6.320 24 C -0.056 4.056 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.293 0.707 40 H 0.075 0.925 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.266 1.343 23.718 26.292 hybrid contribution 0.707 -0.825 0.684 1.284 sum -10.560 0.518 24.402 26.594 Atomic orbital electron populations 1.22479 0.84498 1.02880 1.01619 1.60571 1.09462 1.14669 1.43497 1.22492 0.96622 0.89602 0.99772 1.22503 0.91013 0.85753 1.02698 1.47621 1.49033 1.30356 1.05283 1.21336 0.78162 0.82832 0.87527 1.90628 1.40527 1.28429 1.87283 1.21483 1.02969 1.01038 0.89452 1.19226 0.95441 0.95473 0.93115 1.21410 1.30173 1.13620 0.91041 0.92855 1.25735 0.97544 0.99817 0.95012 1.70016 1.46588 1.42782 0.98942 0.85896 0.79834 0.80573 0.77812 1.19475 1.18913 1.20267 1.20986 0.96834 0.95349 0.85478 1.20645 0.98992 0.97646 0.93907 0.88510 1.23038 0.80677 0.77828 0.84078 1.90727 1.25802 1.67519 1.59068 1.84489 1.51780 1.46457 1.49272 1.20765 0.94219 0.98665 0.91946 0.90278 0.91439 0.93954 0.92060 0.87376 0.89107 0.89051 0.88071 0.87981 0.97543 0.97640 0.92412 0.91946 0.88213 0.70736 0.92545 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.17 127.69 1.17 1.56 16 2 N -0.56 -9.26 4.41 -938.28 -4.14 -13.40 16 3 C 0.04 0.58 5.52 87.05 0.48 1.06 16 4 C 0.10 1.88 6.30 86.48 0.54 2.43 16 5 N -0.59 -16.04 2.55 -818.28 -2.08 -18.13 16 6 C 0.51 19.10 7.62 87.66 0.67 19.76 16 7 O -0.59 -27.25 15.38 -3.03 -0.05 -27.30 16 8 C -0.11 -4.27 3.97 29.85 0.12 -4.15 16 9 C 0.01 0.28 3.33 29.85 0.10 0.38 16 10 C -0.52 -30.45 9.66 25.60 0.25 -30.21 16 11 H 0.05 3.23 7.99 -2.91 -0.02 3.20 16 12 C 0.02 1.00 5.47 84.66 0.46 1.46 16 13 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 14 Si 0.93 47.58 27.47 68.60 1.88 49.46 16 15 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.26 -13.55 6.54 99.48 0.65 -12.90 16 17 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 18 C 0.14 3.54 4.14 87.19 0.36 3.91 16 19 C -0.09 -2.05 2.78 -12.77 -0.04 -2.08 16 20 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 21 C 0.50 10.92 7.60 71.24 0.54 11.46 16 22 O -0.54 -14.97 16.59 21.97 0.36 -14.61 16 23 O -0.51 -7.62 13.13 -51.38 -0.67 -8.30 16 24 C 0.07 1.18 4.17 84.72 0.35 1.53 16 25 H 0.08 0.88 7.96 -2.38 -0.02 0.86 16 26 H 0.07 0.85 8.04 -2.39 -0.02 0.83 16 27 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.65 7.14 -2.39 -0.02 0.64 16 29 H 0.11 0.98 7.52 -2.38 -0.02 0.96 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.80 5.83 -2.39 -0.01 1.79 16 32 H 0.10 3.54 8.03 -2.39 -0.02 3.52 16 33 H 0.10 3.66 7.40 -2.39 -0.02 3.64 16 34 H 0.01 0.33 7.15 -2.39 -0.02 0.32 16 35 H 0.01 0.28 7.53 -2.39 -0.02 0.26 16 36 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 37 H 0.06 2.05 6.89 -2.39 -0.02 2.04 16 38 H 0.10 2.05 8.09 -2.39 -0.02 2.03 16 39 H 0.43 2.61 9.10 -74.06 -0.67 1.94 16 40 H 0.06 0.76 7.18 -2.39 -0.02 0.75 16 41 H 0.09 1.30 7.35 -2.38 -0.02 1.28 16 Total: -1.00 -79.98 329.91 0.92 -79.06 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 0.31 Total: 5.00 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.01 Total: 7.11 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -5.93 Total: -90.43 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.36 Total: -50.20 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.88 Total: 49.46 kcal Total: -79.98 0.92 -79.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606228644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.805 kcal (2) G-P(sol) polarization free energy of solvation -79.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds