Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.44579 * 110.77161 * 2 1 4 4 C 1.54030 * 109.56846 * 142.07366 * 3 2 1 5 5 N 1.47784 * 111.55216 * 39.95715 * 4 3 2 6 6 C 1.34774 * 118.54556 * 221.91300 * 5 4 3 7 7 O 1.21277 * 120.00120 * 179.97438 * 6 5 4 8 8 C 1.50704 * 120.00129 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.47289 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47023 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00241 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99775 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00071 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99630 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47035 * 60.00290 * 14 12 10 16 16 H 1.48506 * 109.46943 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47254 * 299.99933 * 14 12 10 18 18 C 1.44670 * 122.90685 * 41.88844 * 5 4 3 19 19 C 1.54952 * 109.52767 * 270.92325 * 18 5 4 20 20 H 1.09003 * 109.42604 * 309.39886 * 19 18 5 21 21 C 1.50699 * 109.42916 * 189.55607 * 19 18 5 22 22 O 1.20825 * 120.00241 * 359.73402 * 21 19 18 23 23 O 1.34230 * 119.99814 * 179.73028 * 21 19 18 24 24 C 1.46263 * 110.99950 * 236.54070 * 2 1 3 25 25 H 1.08994 * 109.47152 * 183.46407 * 1 2 3 26 26 H 1.08995 * 109.47333 * 303.46314 * 1 2 3 27 27 H 1.09004 * 109.47168 * 63.45788 * 1 2 3 28 28 H 1.08999 * 109.52915 * 22.02525 * 3 2 1 29 29 H 1.08999 * 109.46453 * 262.08215 * 3 2 1 30 30 H 1.08997 * 109.06126 * 279.42817 * 4 3 2 31 31 H 1.08992 * 109.00810 * 160.45376 * 4 3 2 32 32 H 1.09004 * 109.46888 * 300.00125 * 8 6 5 33 33 H 1.08999 * 109.47193 * 59.99946 * 8 6 5 34 34 H 1.09004 * 109.47159 * 299.99838 * 9 8 6 35 35 H 1.08999 * 109.47146 * 59.99796 * 9 8 6 36 36 H 0.96997 * 120.00374 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46505 * 150.90501 * 18 5 4 38 38 H 1.08999 * 109.46488 * 30.94046 * 18 5 4 39 39 H 0.96696 * 117.00004 * 179.97438 * 23 21 19 40 40 H 1.09002 * 108.50547 * 90.17704 * 24 2 1 41 41 H 1.08998 * 108.50116 * 332.55059 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9818 1.3518 0.0000 4 6 3.2351 1.4282 0.8921 5 7 4.0924 0.2357 0.7271 6 6 4.6423 -0.3191 1.8253 7 8 5.3497 -1.2985 1.7205 8 6 4.3780 0.2776 3.1838 9 6 5.1147 -0.5355 4.2501 10 6 4.8509 0.0615 5.6084 11 1 4.2206 0.9334 5.7018 12 6 5.4136 -0.5061 6.7320 13 7 6.1808 -1.5681 6.6182 14 14 5.0861 0.2337 8.4157 15 1 3.6274 0.2073 8.6926 16 1 5.8012 -0.5555 9.4507 17 1 5.5698 1.6374 8.4423 18 6 4.3670 -0.3627 -0.5611 19 6 3.2827 -1.4221 -0.8818 20 1 3.1766 -2.1001 -0.0350 21 6 3.6929 -2.2059 -2.1018 22 8 4.7320 -1.9502 -2.6629 23 8 2.9040 -3.1880 -2.5651 24 6 1.9932 -0.7529 -1.1392 25 1 -0.3633 -1.0257 0.0621 26 1 -0.3634 0.5666 0.8573 27 1 -0.3634 0.4592 -0.9194 28 1 1.2206 2.0302 0.3852 29 1 2.2429 1.6412 -1.0179 30 1 2.9260 1.5029 1.9346 31 1 3.8067 2.3172 0.6258 32 1 4.7331 1.3080 3.2033 33 1 3.3073 0.2584 3.3870 34 1 4.7600 -1.5661 4.2307 35 1 6.1854 -0.5159 4.0466 36 1 6.5770 -1.9672 7.4086 37 1 5.3463 -0.8408 -0.5382 38 1 4.3583 0.4101 -1.3298 39 1 3.2089 -3.6625 -3.3506 40 1 2.1201 -0.0679 -1.9776 41 1 1.2608 -1.5096 -1.4201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606228645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -116.414246 kcal Electronic energy + Delta-G solvation = -23367.624889 eV Core-core repulsion = 19861.765006 eV Total energy + Delta-G solvation = -3505.859883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94155 -39.64397 -38.11919 -36.35508 -34.81642 -33.80321 -33.22856 -30.87859 -29.29081 -27.04480 -25.98619 -24.97743 -23.60674 -21.80090 -21.14968 -20.43734 -18.46041 -18.16728 -17.18990 -17.08475 -16.35724 -15.95139 -15.64948 -15.18232 -15.05186 -14.64984 -14.40343 -14.25182 -13.70713 -13.58052 -13.19685 -12.86957 -12.70227 -12.20502 -12.12852 -12.11909 -11.82626 -11.70694 -11.48018 -11.15659 -11.05610 -10.94216 -10.86918 -10.66731 -10.55557 -9.88061 -9.55740 -9.12409 -8.95755 -8.60603 -8.39266 -8.26403 -5.91223 -3.95404 2.02182 2.64509 3.29904 3.37310 3.41479 3.42919 3.46659 3.69273 4.41942 4.50663 4.66806 4.71258 4.82800 5.01025 5.07751 5.12507 5.22771 5.26259 5.39268 5.42607 5.43574 5.53297 5.60582 5.66236 5.76198 5.83708 6.02042 6.28854 6.30149 6.31515 6.73691 6.81248 6.89156 6.98114 7.70095 7.75131 7.79624 7.93188 8.13076 8.44058 8.81988 9.13127 9.67696 11.19762 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.004081 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.060918 B = 6859.544024 C = 7543.844970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.532 5.532 3 C 0.040 3.960 4 C 0.115 3.885 5 N -0.609 5.609 6 C 0.511 3.489 7 O -0.533 6.533 8 C -0.127 4.127 9 C 0.037 3.963 10 C -0.526 4.526 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.139 3.861 19 C -0.097 4.097 20 H 0.123 0.877 21 C 0.493 3.507 22 O -0.510 6.510 23 O -0.516 6.516 24 C 0.069 3.931 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.409 0.591 40 H 0.040 0.960 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.728 4.792 -19.182 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.256 5.256 3 C -0.090 4.090 4 C -0.009 4.009 5 N -0.343 5.343 6 C 0.302 3.698 7 O -0.408 6.408 8 C -0.167 4.167 9 C 0.000 4.000 10 C -0.564 4.564 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.014 3.986 19 C -0.118 4.118 20 H 0.141 0.859 21 C 0.334 3.666 22 O -0.397 6.397 23 O -0.328 6.328 24 C -0.059 4.059 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.268 0.732 40 H 0.058 0.942 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.929 4.207 -18.505 22.415 hybrid contribution -0.327 0.387 -0.360 0.621 sum -12.256 4.594 -18.865 22.961 Atomic orbital electron populations 1.22482 0.86049 1.02721 1.00547 1.60641 1.07994 1.13815 1.43111 1.22455 0.97458 0.89657 0.99406 1.22093 0.90001 0.86900 1.01896 1.47711 1.49971 1.30395 1.06206 1.21627 0.78171 0.83333 0.86679 1.90665 1.37566 1.26085 1.86485 1.21875 1.02642 1.01211 0.90972 1.18899 0.95722 0.95010 0.90416 1.21184 1.30310 1.13186 0.91727 0.92707 1.25017 0.95211 0.94987 0.99115 1.69986 1.32229 1.21181 1.29478 0.86670 0.78302 0.79124 0.83923 1.20275 1.21336 1.20290 1.21053 0.97693 0.94205 0.85606 1.20886 0.98114 0.98283 0.94503 0.85916 1.23233 0.81207 0.77712 0.84476 1.90728 1.24514 1.66500 1.58003 1.84547 1.52712 1.47235 1.48291 1.20821 0.95584 0.98135 0.91393 0.91090 0.90742 0.95662 0.89736 0.93642 0.88654 0.91643 0.90464 0.90016 0.95883 0.95929 0.92944 0.88617 0.90875 0.73220 0.94188 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.16 60.07 0.55 0.78 16 2 N -0.53 -5.39 4.40 -248.07 -1.09 -6.48 16 3 C 0.04 0.35 5.52 -4.53 -0.02 0.32 16 4 C 0.11 1.27 6.30 -2.80 -0.02 1.25 16 5 N -0.61 -9.08 2.53 -172.22 -0.44 -9.52 16 6 C 0.51 10.13 7.62 -10.98 -0.08 10.05 16 7 O -0.53 -12.82 15.38 5.56 0.09 -12.74 16 8 C -0.13 -2.62 3.97 -27.88 -0.11 -2.73 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 13 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 14 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.14 1.95 4.17 -3.99 -0.02 1.94 16 19 C -0.10 -1.20 2.78 -93.38 -0.26 -1.46 16 20 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 21 C 0.49 5.94 7.60 36.01 0.27 6.21 16 22 O -0.51 -7.53 16.60 -18.75 -0.31 -7.84 16 23 O -0.52 -4.66 13.14 -39.26 -0.52 -5.18 16 24 C 0.07 0.69 4.18 -6.80 -0.03 0.66 16 25 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 26 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.08 0.58 7.52 -51.93 -0.39 0.19 16 29 H 0.05 0.36 7.14 -51.93 -0.37 -0.01 16 30 H 0.10 1.09 5.83 -51.93 -0.30 0.79 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 33 H 0.08 1.55 7.40 -51.93 -0.38 1.17 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 35 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 1.62 6.91 -51.93 -0.36 1.26 16 38 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.41 1.90 9.10 45.56 0.41 2.31 16 40 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16 41 H 0.08 0.73 7.35 -51.93 -0.38 0.34 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -36.43 333.55 -7.24 -43.67 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.47 Total: -0.94 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.25 Total: 4.22 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.79 Total: -42.94 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.74 Total: -25.75 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.43 -7.24 -43.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606228645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.746 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds