Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.44579 * 110.77161 * 2 1 4 4 C 1.54030 * 109.56846 * 142.07366 * 3 2 1 5 5 N 1.47784 * 111.55216 * 39.95715 * 4 3 2 6 6 C 1.34774 * 118.54556 * 221.91300 * 5 4 3 7 7 O 1.21277 * 120.00120 * 179.97438 * 6 5 4 8 8 C 1.50704 * 120.00129 * 359.97438 * 6 5 4 9 9 C 1.52998 * 109.47289 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47023 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00241 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99775 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00071 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99630 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47035 * 60.00290 * 14 12 10 16 16 H 1.48506 * 109.46943 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47254 * 299.99933 * 14 12 10 18 18 C 1.44670 * 122.90685 * 41.88844 * 5 4 3 19 19 C 1.54952 * 109.52767 * 270.92325 * 18 5 4 20 20 H 1.09003 * 109.42604 * 309.39886 * 19 18 5 21 21 C 1.50699 * 109.42916 * 189.55607 * 19 18 5 22 22 O 1.20825 * 120.00241 * 359.73402 * 21 19 18 23 23 O 1.34230 * 119.99814 * 179.73028 * 21 19 18 24 24 C 1.46263 * 110.99950 * 236.54070 * 2 1 3 25 25 H 1.08994 * 109.47152 * 183.46407 * 1 2 3 26 26 H 1.08995 * 109.47333 * 303.46314 * 1 2 3 27 27 H 1.09004 * 109.47168 * 63.45788 * 1 2 3 28 28 H 1.08999 * 109.52915 * 22.02525 * 3 2 1 29 29 H 1.08999 * 109.46453 * 262.08215 * 3 2 1 30 30 H 1.08997 * 109.06126 * 279.42817 * 4 3 2 31 31 H 1.08992 * 109.00810 * 160.45376 * 4 3 2 32 32 H 1.09004 * 109.46888 * 300.00125 * 8 6 5 33 33 H 1.08999 * 109.47193 * 59.99946 * 8 6 5 34 34 H 1.09004 * 109.47159 * 299.99838 * 9 8 6 35 35 H 1.08999 * 109.47146 * 59.99796 * 9 8 6 36 36 H 0.96997 * 120.00374 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46505 * 150.90501 * 18 5 4 38 38 H 1.08999 * 109.46488 * 30.94046 * 18 5 4 39 39 H 0.96696 * 117.00004 * 179.97438 * 23 21 19 40 40 H 1.09002 * 108.50547 * 90.17704 * 24 2 1 41 41 H 1.08998 * 108.50116 * 332.55059 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9818 1.3518 0.0000 4 6 3.2351 1.4282 0.8921 5 7 4.0924 0.2357 0.7271 6 6 4.6423 -0.3191 1.8253 7 8 5.3497 -1.2985 1.7205 8 6 4.3780 0.2776 3.1838 9 6 5.1147 -0.5355 4.2501 10 6 4.8509 0.0615 5.6084 11 1 4.2206 0.9334 5.7018 12 6 5.4136 -0.5061 6.7320 13 7 6.1808 -1.5681 6.6182 14 14 5.0861 0.2337 8.4157 15 1 3.6274 0.2073 8.6926 16 1 5.8012 -0.5555 9.4507 17 1 5.5698 1.6374 8.4423 18 6 4.3670 -0.3627 -0.5611 19 6 3.2827 -1.4221 -0.8818 20 1 3.1766 -2.1001 -0.0350 21 6 3.6929 -2.2059 -2.1018 22 8 4.7320 -1.9502 -2.6629 23 8 2.9040 -3.1880 -2.5651 24 6 1.9932 -0.7529 -1.1392 25 1 -0.3633 -1.0257 0.0621 26 1 -0.3634 0.5666 0.8573 27 1 -0.3634 0.4592 -0.9194 28 1 1.2206 2.0302 0.3852 29 1 2.2429 1.6412 -1.0179 30 1 2.9260 1.5029 1.9346 31 1 3.8067 2.3172 0.6258 32 1 4.7331 1.3080 3.2033 33 1 3.3073 0.2584 3.3870 34 1 4.7600 -1.5661 4.2307 35 1 6.1854 -0.5159 4.0466 36 1 6.5770 -1.9672 7.4086 37 1 5.3463 -0.8408 -0.5382 38 1 4.3583 0.4101 -1.3298 39 1 3.2089 -3.6625 -3.3506 40 1 2.1201 -0.0679 -1.9776 41 1 1.2608 -1.5096 -1.4201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606228645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -144.502012 kcal Electronic energy + Delta-G solvation = -23368.842866 eV Core-core repulsion = 19861.765006 eV Total energy + Delta-G solvation = -3507.077860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96655 -40.85745 -39.20232 -37.25915 -36.03842 -35.59912 -34.56148 -32.83944 -30.14970 -28.55391 -26.98738 -26.37912 -24.68464 -23.38967 -22.21008 -21.51277 -19.73321 -19.18744 -18.82553 -18.17087 -17.72334 -17.20562 -16.84277 -16.49131 -16.34402 -16.01193 -15.76462 -15.20663 -14.78780 -14.61177 -14.40714 -14.20813 -13.88842 -13.72498 -13.60008 -13.20278 -12.96536 -12.75407 -12.64864 -12.63084 -12.49113 -12.30764 -12.03231 -11.87989 -11.83216 -11.66599 -11.48731 -11.28080 -10.66283 -10.52987 -9.64309 -9.28140 -8.14605 -6.28834 1.05609 1.44017 1.49022 1.56498 1.60703 1.84077 2.31618 2.46813 2.97226 3.18308 3.46531 3.69804 3.90380 4.00828 4.03989 4.25845 4.32124 4.34822 4.42385 4.51516 4.56404 4.63890 4.67640 4.79457 4.80246 4.82638 4.89067 4.92029 5.13301 5.15372 5.49582 5.51715 5.66249 5.70478 5.88436 6.07734 6.17079 6.20969 6.40733 6.89020 6.89722 7.31889 7.41481 8.98100 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.004081 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.060918 B = 6859.544024 C = 7543.844970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.559 5.559 3 C 0.044 3.956 4 C 0.102 3.898 5 N -0.593 5.593 6 C 0.508 3.492 7 O -0.592 6.592 8 C -0.112 4.112 9 C 0.043 3.957 10 C -0.541 4.541 11 H 0.078 0.922 12 C -0.007 4.007 13 N -0.940 5.940 14 Si 0.975 3.025 15 H -0.261 1.261 16 H -0.289 1.289 17 H -0.261 1.261 18 C 0.139 3.861 19 C -0.091 4.091 20 H 0.094 0.906 21 C 0.501 3.499 22 O -0.541 6.541 23 O -0.506 6.506 24 C 0.074 3.926 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.104 0.896 34 H -0.021 1.021 35 H -0.021 1.021 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.430 0.570 40 H 0.058 0.942 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.440 7.381 -19.732 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.282 5.282 3 C -0.085 4.085 4 C -0.020 4.020 5 N -0.324 5.324 6 C 0.298 3.702 7 O -0.472 6.472 8 C -0.151 4.151 9 C 0.006 3.994 10 C -0.579 4.579 11 H 0.096 0.904 12 C -0.204 4.204 13 N -0.580 5.580 14 Si 0.798 3.202 15 H -0.186 1.186 16 H -0.215 1.215 17 H -0.186 1.186 18 C 0.014 3.986 19 C -0.112 4.112 20 H 0.112 0.888 21 C 0.343 3.657 22 O -0.431 6.431 23 O -0.320 6.320 24 C -0.055 4.055 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.122 0.878 34 H -0.003 1.003 35 H -0.003 1.003 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.293 0.707 40 H 0.076 0.924 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.712 6.836 -19.111 25.068 hybrid contribution 0.497 -0.468 -0.273 0.736 sum -14.215 6.368 -19.384 24.867 Atomic orbital electron populations 1.22488 0.84476 1.02831 1.01714 1.60566 1.09546 1.14666 1.43452 1.22472 0.96686 0.89558 0.99753 1.22517 0.90970 0.85663 1.02807 1.47650 1.49009 1.30672 1.05092 1.21479 0.78118 0.82818 0.87752 1.90644 1.40489 1.28738 1.87311 1.21613 1.02895 1.01021 0.89581 1.18683 0.93717 0.93914 0.93103 1.21678 1.30316 1.13725 0.92142 0.90435 1.26152 0.94684 0.95266 1.04346 1.70183 1.33719 1.23178 1.30895 0.85367 0.78848 0.78530 0.77449 1.18559 1.21510 1.18605 1.21078 0.96625 0.95314 0.85569 1.20751 0.99087 0.97593 0.93776 0.88837 1.23058 0.80705 0.77858 0.84048 1.90724 1.25734 1.67589 1.59089 1.84490 1.51819 1.46328 1.49330 1.20760 0.94039 0.98695 0.91974 0.91567 0.90120 0.93892 0.87107 0.92125 0.88864 0.89157 0.87968 0.87841 1.00294 1.00299 0.92944 0.92361 0.88065 0.70745 0.92440 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.16 127.69 1.17 1.56 16 2 N -0.56 -9.72 4.40 -938.76 -4.13 -13.85 16 3 C 0.04 0.60 5.52 87.09 0.48 1.08 16 4 C 0.10 1.96 6.30 86.48 0.54 2.50 16 5 N -0.59 -17.35 2.53 -817.16 -2.07 -19.42 16 6 C 0.51 20.79 7.62 87.66 0.67 21.46 16 7 O -0.59 -30.63 15.38 -3.02 -0.05 -30.67 16 8 C -0.11 -4.62 3.97 29.85 0.12 -4.50 16 9 C 0.04 2.48 4.26 29.85 0.13 2.61 16 10 C -0.54 -31.08 9.11 25.60 0.23 -30.84 16 11 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 12 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 13 N -0.94 -60.61 13.29 21.45 0.28 -60.32 16 14 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 15 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 C 0.14 3.88 4.17 87.39 0.36 4.24 16 19 C -0.09 -2.24 2.78 -12.58 -0.03 -2.27 16 20 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 21 C 0.50 11.86 7.60 71.24 0.54 12.40 16 22 O -0.54 -16.00 16.60 21.97 0.36 -15.64 16 23 O -0.51 -8.43 13.14 -51.41 -0.68 -9.11 16 24 C 0.07 1.29 4.18 84.72 0.35 1.64 16 25 H 0.07 0.87 8.03 -2.39 -0.02 0.85 16 26 H 0.08 0.89 7.96 -2.39 -0.02 0.87 16 27 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.11 0.98 7.52 -2.39 -0.02 0.96 16 29 H 0.06 0.68 7.14 -2.39 -0.02 0.66 16 30 H 0.09 1.85 5.83 -2.39 -0.01 1.84 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 3.70 8.03 -2.39 -0.02 3.68 16 33 H 0.10 3.82 7.40 -2.39 -0.02 3.80 16 34 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 35 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 36 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.06 2.09 6.91 -2.38 -0.02 2.08 16 38 H 0.10 2.25 8.09 -2.39 -0.02 2.23 16 39 H 0.43 3.24 9.10 -74.06 -0.67 2.56 16 40 H 0.06 0.83 7.18 -2.39 -0.02 0.81 16 41 H 0.09 1.40 7.35 -2.39 -0.02 1.38 16 Total: -1.00 -84.62 333.55 1.14 -83.48 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.36 Total: 9.08 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.03 Total: 9.93 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -5.92 Total: -93.60 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.36 Total: -55.42 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -84.62 1.14 -83.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606228645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.026 kcal (2) G-P(sol) polarization free energy of solvation -84.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds