Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34777 * 125.64945 * 178.97782 * 5 4 2 7 7 O 1.21586 * 119.99915 * 179.97438 * 6 5 4 8 8 N 1.34784 * 119.99691 * 359.97090 * 6 5 4 9 9 C 1.46504 * 119.99566 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46811 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46899 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99744 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99892 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99856 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00099 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47161 * 89.99771 * 15 13 11 17 17 H 1.48498 * 109.47134 * 209.99944 * 15 13 11 18 18 H 1.48498 * 109.47194 * 330.00347 * 15 13 11 19 19 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 20 20 C 1.54907 * 104.83142 * 24.13000 * 19 5 4 21 21 H 1.09000 * 111.00135 * 81.06852 * 20 19 5 22 22 C 1.52999 * 111.00048 * 204.91325 * 20 19 5 23 23 C 1.50701 * 109.47396 * 287.19815 * 22 20 19 24 24 O 1.20823 * 120.00094 * 359.97438 * 23 22 20 25 25 O 1.34235 * 120.00012 * 180.02562 * 23 22 20 26 26 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 27 27 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 28 28 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 29 29 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 30 30 H 1.08999 * 109.88321 * 100.02034 * 4 2 1 31 31 H 0.96991 * 120.00033 * 0.02562 * 8 6 5 32 32 H 1.08990 * 109.47189 * 300.00423 * 9 8 6 33 33 H 1.09005 * 109.46486 * 60.00191 * 9 8 6 34 34 H 1.09000 * 109.47341 * 300.00571 * 10 9 8 35 35 H 1.09001 * 109.46737 * 60.00733 * 10 9 8 36 36 H 0.97002 * 119.99587 * 180.02562 * 14 13 11 37 37 H 1.09002 * 110.36463 * 142.97358 * 19 5 4 38 38 H 1.09001 * 110.36471 * 265.17904 * 19 5 4 39 39 H 1.08992 * 109.47475 * 47.19905 * 22 20 19 40 40 H 1.09006 * 109.47078 * 167.20030 * 22 20 19 41 41 H 0.96696 * 116.99423 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9924 -2.3810 -1.4937 7 8 4.9408 -2.9599 -1.0001 8 7 3.6889 -2.5708 -2.7932 9 6 4.5022 -3.4743 -3.6109 10 6 3.9475 -3.5104 -5.0363 11 6 4.7836 -4.4402 -5.8773 12 1 5.6261 -4.9543 -5.4388 13 6 4.4731 -4.6345 -7.2065 14 7 5.2032 -5.4456 -7.9406 15 14 3.0155 -3.7458 -7.9647 16 1 3.4632 -2.4419 -8.5167 17 1 2.4432 -4.5749 -9.0557 18 1 1.9813 -3.5140 -6.9245 19 6 3.4633 -1.2508 0.6854 20 6 2.0790 -0.7974 1.2124 21 1 1.4452 -1.6560 1.4347 22 6 2.2278 0.1039 2.4397 23 6 2.6445 -0.7272 3.6258 24 8 2.8054 -1.9182 3.5023 25 8 2.8358 -0.1443 4.8198 26 1 -0.3633 -1.0272 0.0302 27 1 -0.3633 0.5398 0.8744 28 1 -0.3633 0.4874 -0.9047 29 1 1.3130 -1.4731 -1.5801 30 1 2.3741 -0.0989 -1.9979 31 1 2.9325 -2.1088 -3.1870 32 1 5.5322 -3.1187 -3.6303 33 1 4.4719 -4.4769 -3.1841 34 1 2.9174 -3.8662 -5.0165 35 1 3.9774 -2.5079 -5.4633 36 1 4.9849 -5.5820 -8.8758 37 1 3.7961 -2.1446 1.2133 38 1 4.1946 -0.4504 0.7977 39 1 2.9853 0.8626 2.2436 40 1 1.2748 0.5884 2.6524 41 1 3.1022 -0.7184 5.5508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607432792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -134.057115 kcal Electronic energy + Delta-G solvation = -22352.060511 eV Core-core repulsion = 18845.435576 eV Total energy + Delta-G solvation = -3506.624935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87998 -39.97438 -38.11147 -36.45329 -34.90745 -33.57832 -32.66152 -31.92806 -30.10102 -27.65268 -26.59213 -24.75267 -23.15140 -21.50618 -20.78662 -20.36235 -19.78045 -18.39581 -17.75129 -17.12130 -16.81844 -16.42359 -16.08715 -15.40229 -14.81103 -14.41894 -14.17050 -14.01460 -13.82250 -13.69023 -13.41091 -12.96627 -12.83722 -12.64264 -12.56581 -12.32799 -12.02662 -11.86408 -11.46771 -11.32972 -11.20014 -11.17421 -11.02546 -10.73266 -10.36031 -10.21842 -9.95194 -9.72159 -9.29663 -8.74413 -8.59500 -8.25955 -6.08546 -4.08331 1.85221 2.60367 2.83957 3.26574 3.33965 3.35604 3.52874 3.99928 4.10766 4.30846 4.39746 4.41100 4.62213 4.76815 4.92030 4.98353 5.10669 5.16943 5.20255 5.24316 5.28006 5.49706 5.53533 5.64397 5.77512 5.85199 5.96352 6.07064 6.15759 6.28728 6.32274 6.61852 6.86148 7.13263 7.27869 7.34813 7.52212 7.70189 8.28843 8.48380 8.93673 8.97205 9.51586 11.04585 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003069 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.144378 B = 9121.372468 C = 9846.964529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.090 0.910 4 C 0.103 3.897 5 N -0.642 5.642 6 C 0.718 3.282 7 O -0.590 6.590 8 N -0.740 5.740 9 C 0.148 3.852 10 C -0.021 4.021 11 C -0.521 4.521 12 H 0.076 0.924 13 C 0.068 3.932 14 N -0.899 5.899 15 Si 0.883 3.117 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.131 3.869 20 C -0.091 4.091 21 H 0.099 0.901 22 C -0.102 4.102 23 C 0.474 3.526 24 O -0.506 6.506 25 O -0.521 6.521 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 17.018 22.127 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.382 5.382 6 C 0.419 3.581 7 O -0.468 6.468 8 N -0.393 5.393 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.559 4.559 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C 0.007 3.993 20 C -0.110 4.110 21 H 0.117 0.883 22 C -0.139 4.139 23 C 0.316 3.684 24 O -0.393 6.393 25 O -0.333 6.333 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -11.471 16.327 21.846 29.587 hybrid contribution -0.907 0.271 -0.282 0.987 sum -12.377 16.598 21.565 29.895 Atomic orbital electron populations 1.21797 0.93471 1.02604 1.02319 1.22232 0.96515 0.99344 0.93346 0.89194 1.22062 0.88323 0.94800 0.96900 1.47508 1.31783 1.47828 1.11039 1.15543 0.81960 0.79227 0.81341 1.90915 1.30656 1.52747 1.72452 1.45522 1.34939 1.50284 1.08587 1.21392 0.93790 0.91710 0.90595 1.19792 0.97320 0.97486 0.91276 1.20924 1.14492 1.26010 0.94521 0.90564 1.25002 0.96416 0.94884 0.97033 1.69910 1.39388 1.36724 1.07717 0.86741 0.83372 0.79821 0.79070 1.20253 1.21301 1.19102 1.22072 0.95239 1.01434 0.80517 1.22345 0.98009 0.98333 0.92324 0.88317 1.21318 1.04902 0.98351 0.89371 1.23520 0.73503 0.87432 0.83979 1.90790 1.46844 1.16917 1.84703 1.84520 1.81227 1.46903 1.20674 0.92050 0.92076 0.91868 0.91355 0.91412 0.77624 0.92138 0.92111 0.96055 0.96500 0.92581 0.89578 0.92145 0.87115 0.86991 0.73009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.13 37.16 0.34 -0.39 16 2 C -0.10 -0.61 3.01 -88.79 -0.27 -0.88 16 3 H 0.09 0.45 8.04 -51.93 -0.42 0.03 16 4 C 0.10 0.98 5.74 -3.07 -0.02 0.96 16 5 N -0.64 -8.91 3.33 -176.24 -0.59 -9.50 16 6 C 0.72 13.36 8.49 -86.91 -0.74 12.62 16 7 O -0.59 -13.52 16.60 5.29 0.09 -13.43 16 8 N -0.74 -13.32 5.52 -65.22 -0.36 -13.68 16 9 C 0.15 3.19 5.61 -4.04 -0.02 3.16 16 10 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 11 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 12 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 15 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 19 C 0.13 1.56 5.88 -2.53 -0.01 1.55 16 20 C -0.09 -0.72 2.02 -88.48 -0.18 -0.89 16 21 H 0.10 0.91 7.76 -51.93 -0.40 0.51 16 22 C -0.10 -0.54 5.33 -27.88 -0.15 -0.69 16 23 C 0.47 3.71 8.18 36.01 0.29 4.00 16 24 O -0.51 -6.00 15.71 -18.75 -0.29 -6.29 16 25 O -0.52 -2.96 13.42 -39.27 -0.53 -3.49 16 26 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.64 7.82 -51.92 -0.41 0.23 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.39 5.93 7.46 -40.82 -0.30 5.63 16 32 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 35 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 1.29 7.40 -51.93 -0.38 0.90 16 38 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 39 H 0.11 0.44 7.96 -51.93 -0.41 0.02 16 40 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.41 0.90 9.10 45.56 0.41 1.31 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -37.15 340.95 -7.37 -44.52 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.64 Total: 1.53 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.30 Total: 5.54 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.17 Total: -50.06 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.73 Total: -23.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.15 -7.37 -44.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607432792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.537 kcal (2) G-P(sol) polarization free energy of solvation -37.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds