Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34777 * 125.64945 * 178.97782 * 5 4 2 7 7 O 1.21586 * 119.99915 * 179.97438 * 6 5 4 8 8 N 1.34784 * 119.99691 * 359.97090 * 6 5 4 9 9 C 1.46504 * 119.99566 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46811 * 179.97438 * 9 8 6 11 11 C 1.50701 * 109.46899 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99744 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99892 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99856 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00099 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47161 * 89.99771 * 15 13 11 17 17 H 1.48498 * 109.47134 * 209.99944 * 15 13 11 18 18 H 1.48498 * 109.47194 * 330.00347 * 15 13 11 19 19 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 20 20 C 1.54907 * 104.83142 * 24.13000 * 19 5 4 21 21 H 1.09000 * 111.00135 * 81.06852 * 20 19 5 22 22 C 1.52999 * 111.00048 * 204.91325 * 20 19 5 23 23 C 1.50701 * 109.47396 * 287.19815 * 22 20 19 24 24 O 1.20823 * 120.00094 * 359.97438 * 23 22 20 25 25 O 1.34235 * 120.00012 * 180.02562 * 23 22 20 26 26 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 27 27 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 28 28 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 29 29 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 30 30 H 1.08999 * 109.88321 * 100.02034 * 4 2 1 31 31 H 0.96991 * 120.00033 * 0.02562 * 8 6 5 32 32 H 1.08990 * 109.47189 * 300.00423 * 9 8 6 33 33 H 1.09005 * 109.46486 * 60.00191 * 9 8 6 34 34 H 1.09000 * 109.47341 * 300.00571 * 10 9 8 35 35 H 1.09001 * 109.46737 * 60.00733 * 10 9 8 36 36 H 0.97002 * 119.99587 * 180.02562 * 14 13 11 37 37 H 1.09002 * 110.36463 * 142.97358 * 19 5 4 38 38 H 1.09001 * 110.36471 * 265.17904 * 19 5 4 39 39 H 1.08992 * 109.47475 * 47.19905 * 22 20 19 40 40 H 1.09006 * 109.47078 * 167.20030 * 22 20 19 41 41 H 0.96696 * 116.99423 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9924 -2.3810 -1.4937 7 8 4.9408 -2.9599 -1.0001 8 7 3.6889 -2.5708 -2.7932 9 6 4.5022 -3.4743 -3.6109 10 6 3.9475 -3.5104 -5.0363 11 6 4.7836 -4.4402 -5.8773 12 1 5.6261 -4.9543 -5.4388 13 6 4.4731 -4.6345 -7.2065 14 7 5.2032 -5.4456 -7.9406 15 14 3.0155 -3.7458 -7.9647 16 1 3.4632 -2.4419 -8.5167 17 1 2.4432 -4.5749 -9.0557 18 1 1.9813 -3.5140 -6.9245 19 6 3.4633 -1.2508 0.6854 20 6 2.0790 -0.7974 1.2124 21 1 1.4452 -1.6560 1.4347 22 6 2.2278 0.1039 2.4397 23 6 2.6445 -0.7272 3.6258 24 8 2.8054 -1.9182 3.5023 25 8 2.8358 -0.1443 4.8198 26 1 -0.3633 -1.0272 0.0302 27 1 -0.3633 0.5398 0.8744 28 1 -0.3633 0.4874 -0.9047 29 1 1.3130 -1.4731 -1.5801 30 1 2.3741 -0.0989 -1.9979 31 1 2.9325 -2.1088 -3.1870 32 1 5.5322 -3.1187 -3.6303 33 1 4.4719 -4.4769 -3.1841 34 1 2.9174 -3.8662 -5.0165 35 1 3.9774 -2.5079 -5.4633 36 1 4.9849 -5.5820 -8.8758 37 1 3.7961 -2.1446 1.2133 38 1 4.1946 -0.4504 0.7977 39 1 2.9853 0.8626 2.2436 40 1 1.2748 0.5884 2.6524 41 1 3.1022 -0.7184 5.5508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607432792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -162.800018 kcal Electronic energy + Delta-G solvation = -22353.306897 eV Core-core repulsion = 18845.435576 eV Total energy + Delta-G solvation = -3507.871321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66987 -40.99902 -39.16329 -37.05070 -36.65711 -34.91968 -34.34463 -32.51075 -31.91275 -28.62739 -27.36258 -26.42442 -24.10769 -22.66447 -22.13880 -21.09621 -20.96684 -19.18410 -18.94600 -18.83676 -17.83049 -17.14548 -16.98717 -16.76001 -16.25904 -15.97526 -15.49816 -15.20767 -14.90899 -14.61491 -14.50730 -14.17117 -13.97092 -13.57467 -13.39307 -13.23471 -13.05087 -12.95171 -12.62052 -12.47376 -12.20990 -12.17403 -11.89122 -11.82375 -11.75902 -11.62923 -11.53563 -11.36209 -11.28168 -10.78903 -10.24754 -9.51810 -8.29997 -6.37782 1.28523 1.39109 1.42555 1.53832 1.56304 2.07235 2.19324 2.37431 3.03534 3.04747 3.43094 3.51852 3.74305 4.09483 4.21083 4.29586 4.33218 4.41305 4.52774 4.56040 4.65882 4.66747 4.70760 4.72786 4.84554 4.92099 5.08883 5.09729 5.16027 5.23908 5.38733 5.39227 5.42361 5.52965 5.64664 5.70168 6.02126 6.22776 6.69062 6.96697 7.03994 7.26587 7.51284 8.86968 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003069 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.144378 B = 9121.372468 C = 9846.964529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.118 0.882 4 C 0.089 3.911 5 N -0.637 5.637 6 C 0.710 3.290 7 O -0.644 6.644 8 N -0.728 5.728 9 C 0.164 3.836 10 C -0.009 4.009 11 C -0.540 4.540 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.951 5.951 15 Si 0.962 3.038 16 H -0.263 1.263 17 H -0.286 1.286 18 H -0.237 1.237 19 C 0.123 3.877 20 C -0.079 4.079 21 H 0.081 0.919 22 C -0.096 4.096 23 C 0.474 3.526 24 O -0.558 6.558 25 O -0.515 6.515 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.268 0.732 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.149 0.851 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.635 20.927 22.569 34.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.136 0.864 4 C -0.032 4.032 5 N -0.375 5.375 6 C 0.411 3.589 7 O -0.526 6.526 8 N -0.383 5.383 9 C 0.039 3.961 10 C -0.046 4.046 11 C -0.579 4.579 12 H 0.045 0.955 13 C -0.194 4.194 14 N -0.591 5.591 15 Si 0.784 3.216 16 H -0.188 1.188 17 H -0.212 1.212 18 H -0.160 1.160 19 C 0.000 4.000 20 C -0.099 4.099 21 H 0.100 0.900 22 C -0.133 4.133 23 C 0.319 3.681 24 O -0.449 6.449 25 O -0.328 6.328 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.167 0.833 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -14.951 20.309 22.347 33.695 hybrid contribution 0.254 -0.986 -0.304 1.063 sum -14.697 19.322 22.043 32.791 Atomic orbital electron populations 1.21802 0.91912 1.02354 1.03862 1.22252 0.97530 0.99686 0.90347 0.86398 1.22490 0.86683 0.95059 0.99012 1.47542 1.31951 1.46504 1.11494 1.15747 0.81959 0.79660 0.81490 1.90872 1.33260 1.55037 1.73464 1.45108 1.35032 1.49852 1.08330 1.20908 0.93420 0.91333 0.90396 1.19623 0.96886 0.97104 0.91028 1.21234 1.14097 1.26876 0.95683 0.95452 1.26112 1.00144 0.95708 0.97422 1.70085 1.41902 1.38767 1.08346 0.85497 0.79182 0.78462 0.78477 1.18767 1.21197 1.15951 1.22267 0.98404 1.00114 0.79186 1.22231 0.94784 0.98686 0.94181 0.90043 1.21426 1.07461 0.97591 0.86806 1.24079 0.72157 0.86927 0.84945 1.90792 1.49317 1.19254 1.85493 1.84492 1.80672 1.46998 1.20675 0.93301 0.89932 0.90907 0.91005 0.89858 0.75529 0.94051 0.94373 0.94503 0.94426 0.92279 0.93676 0.90900 0.84783 0.83348 0.71403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.13 71.98 0.66 -0.14 16 2 C -0.08 -0.70 3.01 -9.61 -0.03 -0.73 16 3 H 0.12 0.48 8.04 -2.39 -0.02 0.46 16 4 C 0.09 1.45 5.74 86.73 0.50 1.95 16 5 N -0.64 -17.24 3.33 -829.75 -2.76 -20.00 16 6 C 0.71 26.83 8.49 179.05 1.52 28.35 16 7 O -0.64 -31.05 16.60 -3.99 -0.07 -31.12 16 8 N -0.73 -25.87 5.52 -478.51 -2.64 -28.51 16 9 C 0.16 7.23 5.61 86.38 0.48 7.72 16 10 C -0.01 -0.40 4.16 29.85 0.12 -0.27 16 11 C -0.54 -31.65 9.66 25.60 0.25 -31.40 16 12 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 13 C 0.00 0.18 5.47 84.65 0.46 0.65 16 14 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 15 Si 0.96 42.59 27.47 68.60 1.88 44.48 16 16 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 19 C 0.12 2.91 5.88 86.85 0.51 3.42 16 20 C -0.08 -1.08 2.02 -9.41 -0.02 -1.10 16 21 H 0.08 1.42 7.76 -2.39 -0.02 1.41 16 22 C -0.10 -0.69 5.33 29.85 0.16 -0.53 16 23 C 0.47 6.72 8.18 71.24 0.58 7.30 16 24 O -0.56 -13.52 15.71 21.97 0.35 -13.18 16 25 O -0.51 -4.80 13.42 -51.47 -0.69 -5.49 16 26 H 0.05 0.42 8.13 -2.39 -0.02 0.40 16 27 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 1.14 7.82 -2.38 -0.02 1.12 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.41 11.47 7.46 -92.72 -0.69 10.78 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 35 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.04 1.44 7.40 -2.39 -0.02 1.42 16 38 H 0.07 1.52 7.91 -2.39 -0.02 1.50 16 39 H 0.13 0.44 7.96 -2.39 -0.02 0.42 16 40 H 0.15 0.09 8.14 -2.38 -0.02 0.07 16 41 H 0.42 1.29 9.10 -74.06 -0.67 0.62 16 Total: -1.00 -87.05 340.95 1.19 -85.86 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.38 Total: 12.55 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.20 Total: 15.22 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -5.10 Total: -108.31 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.41 Total: -49.79 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.48 kcal Total: -87.05 1.19 -85.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607432792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.944 kcal (2) G-P(sol) polarization free energy of solvation -87.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds