Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48503 * 109.47407 * 270.00152 * 3 2 1 5 5 H 1.48510 * 109.47215 * 30.00264 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00006 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47325 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99864 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.72927 * 12 11 10 14 14 N 1.34777 * 119.99964 * 179.73002 * 12 11 10 15 15 C 1.46496 * 119.99614 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46851 * 179.97438 * 15 14 12 17 17 C 1.50704 * 110.01865 * 58.60849 * 16 15 14 18 18 O 1.20828 * 120.00194 * 120.69685 * 17 16 15 19 19 O 1.34233 * 119.99551 * 300.70365 * 17 16 15 20 20 C 1.54264 * 110.03317 * 297.16526 * 16 15 14 21 21 C 1.54893 * 104.19618 * 217.10296 * 20 16 15 22 22 C 1.54895 * 102.74920 * 37.94226 * 21 20 16 23 23 C 1.53875 * 110.03469 * 179.97438 * 16 15 14 24 24 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47034 * 60.00278 * 9 7 2 26 26 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 27 27 H 1.09007 * 109.46593 * 60.00308 * 10 9 7 28 28 H 1.09006 * 109.47216 * 300.00766 * 10 9 7 29 29 H 0.97000 * 120.00740 * 359.72857 * 11 10 9 30 30 H 0.96996 * 119.99887 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.47287 * 299.99298 * 15 14 12 32 32 H 1.09002 * 109.47320 * 59.99900 * 15 14 12 33 33 H 0.96705 * 116.99153 * 180.02562 * 19 17 16 34 34 H 1.08989 * 110.48711 * 335.78086 * 20 16 15 35 35 H 1.09000 * 110.48529 * 98.42792 * 20 16 15 36 36 H 1.08997 * 110.76018 * 279.63069 * 21 20 16 37 37 H 1.08995 * 110.75913 * 156.25540 * 21 20 16 38 38 H 1.08995 * 110.48886 * 203.37858 * 22 21 20 39 39 H 1.09006 * 110.48120 * 80.73149 * 22 21 20 40 40 H 1.08999 * 110.03587 * 238.57067 * 23 16 15 41 41 H 1.09001 * 110.03297 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5128 -4.9308 0.0020 12 6 2.1867 -6.0980 0.0024 13 8 3.4026 -6.0980 -0.0027 14 7 1.5129 -7.2652 0.0084 15 6 2.2454 -8.5339 0.0094 16 6 1.2512 -9.6968 0.0172 17 6 0.3504 -9.6135 -1.1881 18 8 0.3180 -10.5235 -1.9822 19 8 -0.4159 -8.5281 -1.3794 20 6 0.4102 -9.6644 1.3100 21 6 0.2271 -11.1569 1.6816 22 6 1.5997 -11.7721 1.3117 23 6 2.0075 -11.0369 0.0177 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.8726 -3.6039 0.8910 28 1 2.8714 -3.6047 -0.8890 29 1 0.5428 -4.9309 0.0064 30 1 0.5429 -7.2652 0.0127 31 1 2.8687 -8.5943 -0.8828 32 1 2.8754 -8.5890 0.8972 33 1 -0.9775 -8.5206 -2.1666 34 1 0.9452 -9.1374 2.1000 35 1 -0.5565 -9.1961 1.1246 36 1 -0.5700 -11.6073 1.0902 37 1 0.0287 -11.2681 2.7475 38 1 1.5011 -12.8418 1.1276 39 1 2.3268 -11.5854 2.1021 40 1 1.7221 -11.6270 -0.8531 41 1 3.0828 -10.8587 0.0119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -146.539688 kcal Electronic energy + Delta-G solvation = -22564.660474 eV Core-core repulsion = 19057.494254 eV Total energy + Delta-G solvation = -3507.166220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28657 -39.43185 -38.16471 -36.45987 -35.00088 -34.22595 -32.80453 -30.75542 -29.27344 -29.12648 -25.50506 -24.18630 -23.76492 -21.41716 -20.95067 -20.43116 -19.76149 -18.47209 -17.69770 -17.15080 -16.41858 -16.32197 -15.58718 -15.28526 -15.15048 -14.81284 -14.48709 -14.08824 -13.95661 -13.58894 -13.50798 -13.07094 -12.58144 -12.27669 -12.06535 -11.92117 -11.56599 -11.54766 -11.49487 -11.23523 -11.16660 -11.02438 -10.97381 -10.62946 -10.61575 -10.29270 -9.91680 -9.53686 -9.24388 -9.00407 -8.46613 -8.21166 -6.07880 -4.10322 1.87164 2.63522 3.03505 3.30651 3.36761 3.41451 3.62814 3.97177 4.05592 4.32451 4.41868 4.69269 4.75236 4.90690 4.93550 5.04207 5.12858 5.25220 5.29295 5.41985 5.51446 5.53735 5.55452 5.69396 5.77809 5.79347 5.95549 6.21043 6.32687 6.42638 6.60993 6.80542 7.04093 7.28430 7.56654 7.61398 7.65678 7.91654 8.28211 8.48392 8.94800 9.03694 9.54347 11.03812 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.002882 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.520406 B = 9714.424241 C = 9918.030398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.699 3.301 13 O -0.601 6.601 14 N -0.751 5.751 15 C 0.156 3.844 16 C -0.066 4.066 17 C 0.493 3.507 18 O -0.512 6.512 19 O -0.511 6.511 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.117 4.117 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.393 0.607 30 H 0.401 0.599 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 -23.650 1.943 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.398 3.602 13 O -0.480 6.480 14 N -0.411 5.411 15 C 0.031 3.969 16 C -0.068 4.068 17 C 0.335 3.665 18 O -0.399 6.399 19 O -0.324 6.324 20 C -0.151 4.151 21 C -0.165 4.165 22 C -0.160 4.160 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.273 0.727 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.406 -23.742 2.057 23.872 hybrid contribution -0.937 1.003 -0.657 1.522 sum -2.344 -22.739 1.400 22.902 Atomic orbital electron populations 1.69956 1.06083 1.26826 1.50526 1.24993 0.94891 0.99391 0.95039 0.86515 0.79852 0.83012 0.78184 1.20585 1.21198 1.19713 1.21064 0.93281 0.90387 1.51161 0.92223 1.19323 0.94257 0.91073 0.97795 1.21584 0.95624 0.80445 1.00612 1.45507 1.09853 1.05253 1.78469 1.16045 0.85571 0.80513 0.78023 1.90888 1.11812 1.86759 1.58543 1.45201 1.10051 1.04123 1.81696 1.21158 0.92384 0.80006 1.03377 1.21544 0.94611 0.98482 0.92120 1.23201 0.78046 0.78745 0.86492 1.90688 1.64833 1.38833 1.45575 1.84426 1.54406 1.43274 1.50256 1.22545 0.99952 0.97933 0.94721 1.22558 0.97648 0.94649 1.01668 1.22372 0.96964 0.99768 0.96876 1.22309 1.00199 0.92615 1.00353 0.92885 0.95995 0.95958 0.92807 0.92833 0.77365 0.76192 0.91315 0.89913 0.72690 0.89224 0.90341 0.91434 0.90692 0.91064 0.90976 0.88827 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.12 5.56 -65.22 -0.36 -13.49 16 12 C 0.70 12.26 8.57 -86.91 -0.74 11.52 16 13 O -0.60 -12.93 16.34 5.29 0.09 -12.85 16 14 N -0.75 -9.50 4.87 -65.23 -0.32 -9.82 16 15 C 0.16 1.71 4.20 -4.04 -0.02 1.69 16 16 C -0.07 -0.57 0.63 -154.54 -0.10 -0.67 16 17 C 0.49 4.84 6.86 36.01 0.25 5.09 16 18 O -0.51 -6.32 15.97 -18.75 -0.30 -6.62 16 19 O -0.51 -4.01 10.72 -39.26 -0.42 -4.43 16 20 C -0.11 -0.82 5.35 -25.07 -0.13 -0.96 16 21 C -0.13 -0.80 6.91 -24.73 -0.17 -0.97 16 22 C -0.12 -0.76 6.83 -25.04 -0.17 -0.93 16 23 C -0.12 -0.91 6.06 -25.59 -0.15 -1.06 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.39 6.05 8.49 -40.82 -0.35 5.70 16 30 H 0.40 4.30 6.12 -40.82 -0.25 4.05 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 33 H 0.41 1.77 9.10 45.56 0.41 2.19 16 34 H 0.09 0.65 7.83 -51.94 -0.41 0.25 16 35 H 0.08 0.55 7.64 -51.93 -0.40 0.15 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.85 6.39 -51.93 -0.33 0.52 16 41 H 0.08 0.58 7.67 -51.93 -0.40 0.18 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -34.36 338.97 -7.79 -42.15 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.48 Total: 5.30 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.82 Total: 3.65 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.06 Total: -48.71 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.63 Total: -23.90 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.36 -7.79 -42.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.387 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds