Wall clock time and date at job start Tue Mar 31 2020 05:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99884 * 2 1 4 4 H 1.48503 * 109.47407 * 270.00152 * 3 2 1 5 5 H 1.48510 * 109.47215 * 30.00264 * 3 2 1 6 6 H 1.48501 * 109.47274 * 150.00006 * 3 2 1 7 7 C 1.37875 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00025 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47325 * 179.97438 * 9 7 2 11 11 N 1.46493 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.34784 * 119.99864 * 180.02562 * 11 10 9 13 13 O 1.21588 * 119.99858 * 359.72927 * 12 11 10 14 14 N 1.34777 * 119.99964 * 179.73002 * 12 11 10 15 15 C 1.46496 * 119.99614 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46851 * 179.97438 * 15 14 12 17 17 C 1.50704 * 110.01865 * 58.60849 * 16 15 14 18 18 O 1.20828 * 120.00194 * 120.69685 * 17 16 15 19 19 O 1.34233 * 119.99551 * 300.70365 * 17 16 15 20 20 C 1.54264 * 110.03317 * 297.16526 * 16 15 14 21 21 C 1.54893 * 104.19618 * 217.10296 * 20 16 15 22 22 C 1.54895 * 102.74920 * 37.94226 * 21 20 16 23 23 C 1.53875 * 110.03469 * 179.97438 * 16 15 14 24 24 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47034 * 60.00278 * 9 7 2 26 26 H 1.08993 * 109.47357 * 300.00275 * 9 7 2 27 27 H 1.09007 * 109.46593 * 60.00308 * 10 9 7 28 28 H 1.09006 * 109.47216 * 300.00766 * 10 9 7 29 29 H 0.97000 * 120.00740 * 359.72857 * 11 10 9 30 30 H 0.96996 * 119.99887 * 359.97438 * 14 12 11 31 31 H 1.09000 * 109.47287 * 299.99298 * 15 14 12 32 32 H 1.09002 * 109.47320 * 59.99900 * 15 14 12 33 33 H 0.96705 * 116.99153 * 180.02562 * 19 17 16 34 34 H 1.08989 * 110.48711 * 335.78086 * 20 16 15 35 35 H 1.09000 * 110.48529 * 98.42792 * 20 16 15 36 36 H 1.08997 * 110.76018 * 279.63069 * 21 20 16 37 37 H 1.08995 * 110.75913 * 156.25540 * 21 20 16 38 38 H 1.08995 * 110.48886 * 203.37858 * 22 21 20 39 39 H 1.09006 * 110.48120 * 80.73149 * 22 21 20 40 40 H 1.08999 * 110.03587 * 238.57067 * 23 16 15 41 41 H 1.09001 * 110.03297 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5128 -4.9308 0.0020 12 6 2.1867 -6.0980 0.0024 13 8 3.4026 -6.0980 -0.0027 14 7 1.5129 -7.2652 0.0084 15 6 2.2454 -8.5339 0.0094 16 6 1.2512 -9.6968 0.0172 17 6 0.3504 -9.6135 -1.1881 18 8 0.3180 -10.5235 -1.9822 19 8 -0.4159 -8.5281 -1.3794 20 6 0.4102 -9.6644 1.3100 21 6 0.2271 -11.1569 1.6816 22 6 1.5997 -11.7721 1.3117 23 6 2.0075 -11.0369 0.0177 24 1 -0.4851 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.8726 -3.6039 0.8910 28 1 2.8714 -3.6047 -0.8890 29 1 0.5428 -4.9309 0.0064 30 1 0.5429 -7.2652 0.0127 31 1 2.8687 -8.5943 -0.8828 32 1 2.8754 -8.5890 0.8972 33 1 -0.9775 -8.5206 -2.1666 34 1 0.9452 -9.1374 2.1000 35 1 -0.5565 -9.1961 1.1246 36 1 -0.5700 -11.6073 1.0902 37 1 0.0287 -11.2681 2.7475 38 1 1.5011 -12.8418 1.1276 39 1 2.3268 -11.5854 2.1021 40 1 1.7221 -11.6270 -0.8531 41 1 3.0828 -10.8587 0.0119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:44 Heat of formation + Delta-G solvation = -171.263176 kcal Electronic energy + Delta-G solvation = -22565.732565 eV Core-core repulsion = 19057.494254 eV Total energy + Delta-G solvation = -3508.238311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08121 -40.78596 -38.88737 -37.26413 -36.61795 -35.43739 -34.76987 -31.98455 -30.71622 -29.76258 -26.99799 -25.60798 -24.48085 -22.90063 -22.13696 -21.57127 -20.51328 -19.54520 -18.73216 -18.37346 -18.00537 -17.26437 -16.72951 -16.63139 -16.47238 -15.86834 -15.59377 -15.31689 -15.15620 -14.99974 -14.43022 -14.26687 -14.15789 -13.57819 -13.18731 -12.92217 -12.74338 -12.66840 -12.50357 -12.23437 -12.19635 -12.12489 -12.02359 -11.91473 -11.65545 -11.60268 -11.47401 -11.31213 -11.16453 -10.58625 -10.32920 -9.69232 -8.22220 -6.32157 1.08821 1.43363 1.43722 1.55117 1.75943 1.98666 2.19823 2.42909 3.12720 3.23094 3.37492 3.49937 3.69794 4.13538 4.22807 4.29694 4.44070 4.50103 4.54229 4.55838 4.65490 4.68194 4.76777 4.90036 4.90992 5.04147 5.17354 5.20683 5.24640 5.34132 5.43745 5.45210 5.54619 5.59696 5.62757 5.81570 6.08373 6.19755 6.81184 6.89811 7.17534 7.37121 7.62964 8.89688 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.002882 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.520406 B = 9714.424241 C = 9918.030398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.732 5.732 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.729 5.729 15 C 0.155 3.845 16 C -0.060 4.060 17 C 0.494 3.506 18 O -0.540 6.540 19 O -0.509 6.509 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.117 4.117 24 H 0.266 0.734 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.407 0.593 30 H 0.413 0.587 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.429 0.571 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -24.035 2.578 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.398 3.602 13 O -0.523 6.523 14 N -0.388 5.388 15 C 0.031 3.969 16 C -0.061 4.061 17 C 0.338 3.662 18 O -0.430 6.430 19 O -0.323 6.323 20 C -0.150 4.150 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.242 0.758 30 H 0.252 0.748 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.292 0.708 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.582 -24.161 2.687 24.362 hybrid contribution -0.948 1.078 -0.883 1.685 sum -2.530 -23.083 1.804 23.291 Atomic orbital electron populations 1.70054 1.07498 1.27956 1.51101 1.25852 0.95790 1.03023 0.94465 0.85460 0.78665 0.78531 0.78476 1.19855 1.20519 1.19053 1.21479 0.93618 0.91949 1.51404 0.92312 1.19123 0.94225 0.91598 0.96378 1.21069 0.94605 0.81125 0.99585 1.45193 1.10362 1.04382 1.78739 1.16135 0.85075 0.81255 0.77724 1.90863 1.13696 1.87388 1.60331 1.45031 1.10616 1.03265 1.79916 1.21277 0.92905 0.79675 1.03074 1.21538 0.94205 0.97796 0.92586 1.23401 0.77958 0.78582 0.86300 1.90684 1.65863 1.39915 1.46536 1.84377 1.54346 1.42345 1.51269 1.22579 0.99813 0.98871 0.93782 1.22555 0.97499 0.93711 1.02463 1.22387 0.97152 0.99963 0.96169 1.22319 1.00449 0.92014 1.00752 0.92568 0.97358 0.97173 0.93730 0.93979 0.75815 0.74759 0.92521 0.89389 0.70816 0.88902 0.89937 0.91857 0.89303 0.90395 0.89975 0.90206 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.41 5.46 84.65 0.46 0.88 16 3 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.22 5.09 29.85 0.15 1.37 16 10 C 0.16 6.98 5.61 86.38 0.48 7.46 16 11 N -0.73 -25.64 5.56 -478.52 -2.66 -28.30 16 12 C 0.70 23.99 8.57 179.05 1.53 25.52 16 13 O -0.64 -27.43 16.34 -3.99 -0.07 -27.50 16 14 N -0.73 -17.49 4.87 -478.54 -2.33 -19.82 16 15 C 0.16 3.23 4.20 86.38 0.36 3.59 16 16 C -0.06 -0.95 0.63 -52.20 -0.03 -0.98 16 17 C 0.49 9.17 6.86 71.24 0.49 9.66 16 18 O -0.54 -13.06 15.97 21.96 0.35 -12.71 16 19 O -0.51 -7.18 10.72 -51.44 -0.55 -7.73 16 20 C -0.11 -1.40 5.35 31.67 0.17 -1.23 16 21 C -0.12 -1.30 6.91 31.89 0.22 -1.08 16 22 C -0.12 -1.25 6.83 31.69 0.22 -1.04 16 23 C -0.12 -1.69 6.06 31.34 0.19 -1.50 16 24 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.41 12.09 8.49 -92.71 -0.79 11.30 16 30 H 0.41 8.08 6.12 -92.71 -0.57 7.51 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.79 8.12 -2.39 -0.02 1.78 16 33 H 0.43 3.02 9.10 -74.05 -0.67 2.35 16 34 H 0.09 1.13 7.83 -2.39 -0.02 1.11 16 35 H 0.08 0.97 7.64 -2.39 -0.02 0.95 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.08 1.41 6.39 -2.39 -0.02 1.39 16 41 H 0.09 1.14 7.67 -2.39 -0.02 1.12 16 Total: -1.00 -72.83 338.97 0.57 -72.26 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -0.97 Total: 19.64 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 4.48 Total: 12.38 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -4.71 Total: -101.91 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: -0.27 Total: -47.94 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -72.83 0.57 -72.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.002 kcal (2) G-P(sol) polarization free energy of solvation -72.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds