Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47459 * 2 1 4 4 C 1.50694 * 109.47416 * 119.99908 * 2 1 3 5 5 O 1.20830 * 120.00266 * 119.99617 * 4 2 1 6 6 O 1.34234 * 120.00374 * 300.00114 * 4 2 1 7 7 C 1.50701 * 109.47176 * 240.00299 * 2 1 3 8 8 O 1.21279 * 120.00132 * 240.00397 * 7 2 1 9 9 N 1.34773 * 119.99995 * 59.99817 * 7 2 1 10 10 C 1.46498 * 120.00110 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47509 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.42091 * 295.12909 * 11 10 9 13 13 C 1.53193 * 109.14947 * 178.67009 * 12 11 10 14 14 N 1.46932 * 108.89365 * 54.58000 * 13 12 11 15 15 C 1.36929 * 120.62923 * 126.33970 * 14 13 12 16 16 H 1.07994 * 120.00472 * 332.28422 * 15 14 13 17 17 C 1.38823 * 119.99710 * 152.28799 * 15 14 13 18 18 N 1.31617 * 119.99601 * 342.59309 * 17 15 14 19 19 Si 1.86793 * 119.99892 * 162.59877 * 17 15 14 20 20 H 1.48502 * 109.47323 * 94.34576 * 19 17 15 21 21 H 1.48497 * 109.47157 * 214.34797 * 19 17 15 22 22 H 1.48496 * 109.47300 * 334.34614 * 19 17 15 23 23 C 1.46927 * 118.73576 * 306.31982 * 14 13 12 24 24 C 1.53038 * 109.46293 * 174.99544 * 11 10 9 25 25 H 1.09003 * 109.47386 * 59.99513 * 1 2 3 26 26 H 1.08993 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46928 * 299.99871 * 1 2 3 28 28 H 0.96696 * 116.99841 * 179.97438 * 6 4 2 29 29 H 0.96998 * 120.00023 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47215 * 59.99635 * 10 9 7 31 31 H 1.09003 * 109.47121 * 299.99677 * 10 9 7 32 32 H 1.09005 * 109.45806 * 55.02951 * 11 10 9 33 33 H 1.08996 * 109.68615 * 58.70772 * 12 11 10 34 34 H 1.08996 * 109.47201 * 298.50878 * 12 11 10 35 35 H 1.08995 * 109.58815 * 294.71872 * 13 12 11 36 36 H 1.09000 * 109.58606 * 174.43227 * 13 12 11 37 37 H 0.97000 * 119.99465 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.58712 * 173.40018 * 23 14 13 39 39 H 1.09003 * 109.58223 * 293.67509 * 23 14 13 40 40 H 1.09002 * 109.49898 * 61.43965 * 24 11 10 41 41 H 1.09001 * 109.50239 * 301.34052 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.0323 -0.7103 -1.2305 8 8 2.7295 -1.6965 -1.1193 9 7 1.7067 -0.2499 -2.4546 10 6 2.1946 -0.9407 -3.6508 11 6 1.6841 -0.2198 -4.9000 12 6 0.1556 -0.3259 -4.9611 13 6 -0.3514 0.4259 -6.1959 14 7 0.3392 -0.0918 -7.3850 15 6 -0.3728 -0.5399 -8.4654 16 1 -1.3674 -0.9381 -8.3292 17 6 0.1839 -0.4823 -9.7358 18 7 1.2218 0.2940 -9.9648 19 14 -0.5402 -1.5063 -11.1201 20 1 -1.5175 -0.6881 -11.8821 21 1 0.5475 -1.9511 -12.0279 22 1 -1.2263 -2.6938 -10.5507 23 6 1.8082 -0.1192 -7.3928 24 6 2.2941 -0.8653 -6.1463 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 2.0536 -0.7410 3.2088 29 1 1.1487 0.5386 -2.5435 30 1 1.8309 -1.9683 -3.6506 31 1 3.2846 -0.9411 -3.6510 32 1 1.9731 0.8304 -4.8567 33 1 -0.2792 0.1138 -4.0636 34 1 -0.1334 -1.3747 -5.0298 35 1 -0.1429 1.4902 -6.0867 36 1 -1.4254 0.2728 -6.3015 37 1 1.6106 0.3345 -10.8526 38 1 2.1593 -0.6341 -8.2871 39 1 2.1926 0.9007 -7.3839 40 1 1.9852 -1.9091 -6.2036 41 1 3.3813 -0.8098 -6.0898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609700747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -117.292068 kcal Electronic energy + Delta-G solvation = -22719.477387 eV Core-core repulsion = 19213.579438 eV Total energy + Delta-G solvation = -3505.897948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95095 -39.37177 -37.80936 -36.25175 -34.93884 -33.96974 -32.63858 -30.74792 -29.72748 -26.96748 -25.73280 -24.18691 -22.76028 -22.11893 -21.03463 -20.21202 -19.08589 -18.31995 -17.08123 -17.03732 -16.68722 -16.10432 -15.39151 -15.15636 -14.79962 -14.21654 -13.99349 -13.79849 -13.55959 -13.42731 -13.19041 -12.78161 -12.61236 -12.35594 -12.30685 -12.18285 -11.81905 -11.67434 -11.35633 -11.00584 -10.72269 -10.68950 -10.53043 -10.26186 -10.23319 -9.96064 -9.74170 -9.55971 -9.43387 -9.01950 -8.47683 -6.68749 -5.80325 -3.21937 1.98314 2.42849 2.53703 3.26034 3.36569 3.44236 3.46766 4.31250 4.47001 4.49006 4.57059 4.96075 5.09938 5.19820 5.21320 5.32605 5.35764 5.40394 5.58460 5.66044 5.83885 5.91982 6.02134 6.11905 6.24070 6.29873 6.38789 6.43750 6.58319 6.66884 6.74115 6.79068 6.95595 7.34926 7.42720 7.64801 7.66729 7.78591 8.15854 8.44001 9.20362 9.84139 10.40425 11.28294 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044862 B = 0.002989 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.979545 B = 9365.488039 C = 9589.112608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.133 0.867 4 C 0.478 3.522 5 O -0.468 6.468 6 O -0.520 6.520 7 C 0.510 3.490 8 O -0.503 6.503 9 N -0.721 5.721 10 C 0.125 3.875 11 C -0.090 4.090 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.171 3.829 24 C -0.133 4.133 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.411 0.589 29 H 0.400 0.600 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.052 0.948 37 H 0.254 0.746 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.058 0.942 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.622 2.775 20.766 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.151 0.849 4 C 0.317 3.683 5 O -0.351 6.351 6 O -0.333 6.333 7 C 0.293 3.707 8 O -0.376 6.376 9 N -0.374 5.374 10 C 0.002 3.998 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.046 3.954 24 C -0.173 4.173 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.270 0.730 29 H 0.235 0.765 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.033 1.975 20.283 20.379 hybrid contribution -0.322 -0.315 -0.296 0.539 sum -0.288 1.660 19.987 20.058 Atomic orbital electron populations 1.21745 0.89655 1.04026 1.04484 1.20942 0.99999 1.01980 0.89793 0.84947 1.22641 0.78214 0.83143 0.84328 1.90888 1.33345 1.24447 1.86440 1.84476 1.72812 1.59314 1.16694 1.19798 0.81474 0.85236 0.84185 1.90869 1.35948 1.24827 1.85950 1.45989 1.53818 1.32263 1.05343 1.21606 0.98875 0.96497 0.82861 1.21369 0.96523 0.99590 0.93391 1.22133 0.94364 1.01557 0.98593 1.20883 0.95923 0.94409 0.86925 1.44053 1.01343 1.72491 1.13647 1.19177 1.00164 1.33791 0.85057 0.91756 1.25030 0.98850 0.98634 0.97181 1.70033 1.25629 1.37945 1.21143 0.86304 0.78185 0.80319 0.82115 1.21485 1.21545 1.20433 1.20766 0.83342 0.96663 0.94673 1.22174 0.98412 1.00596 0.96088 0.90172 0.91358 0.89978 0.72975 0.76507 0.91508 0.91695 0.91266 0.93440 0.92149 0.96629 0.92925 0.93647 0.89391 0.96439 0.92360 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.02 37.16 0.34 -0.56 16 2 C -0.10 -0.90 3.16 -92.93 -0.29 -1.20 16 3 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.48 5.07 7.62 36.00 0.27 5.35 16 5 O -0.47 -7.22 14.94 -26.86 -0.40 -7.62 16 6 O -0.52 -3.64 13.33 -39.27 -0.52 -4.16 16 7 C 0.51 6.47 7.15 -10.99 -0.08 6.39 16 8 O -0.50 -8.95 14.19 -18.95 -0.27 -9.22 16 9 N -0.72 -8.08 5.17 -60.30 -0.31 -8.39 16 10 C 0.12 1.71 5.06 -4.05 -0.02 1.69 16 11 C -0.09 -1.35 2.19 -90.42 -0.20 -1.55 16 12 C -0.13 -1.98 5.27 -26.45 -0.14 -2.12 16 13 C 0.15 2.85 6.50 -3.71 -0.02 2.83 16 14 N -0.59 -14.41 3.00 -172.31 -0.52 -14.92 16 15 C -0.25 -6.82 9.58 -15.06 -0.14 -6.97 16 16 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 19 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 24 C -0.13 -2.41 5.36 -26.61 -0.14 -2.55 16 25 H 0.08 0.39 7.56 -51.93 -0.39 0.00 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.40 8.11 -51.92 -0.42 -0.02 16 28 H 0.41 1.30 9.10 45.56 0.41 1.72 16 29 H 0.40 3.40 7.07 -40.82 -0.29 3.12 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.58 7.16 -51.93 -0.37 0.21 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 2.31 6.04 -51.93 -0.31 1.99 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -35.25 334.46 -7.49 -42.73 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.56 Total: 0.17 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.54 Total: 5.20 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.21 Total: -48.62 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -1.19 Total: -21.00 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.25 -7.49 -42.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609700747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.557 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds