Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47459 * 2 1 4 4 C 1.50694 * 109.47416 * 119.99908 * 2 1 3 5 5 O 1.20830 * 120.00266 * 119.99617 * 4 2 1 6 6 O 1.34234 * 120.00374 * 300.00114 * 4 2 1 7 7 C 1.50701 * 109.47176 * 240.00299 * 2 1 3 8 8 O 1.21279 * 120.00132 * 240.00397 * 7 2 1 9 9 N 1.34773 * 119.99995 * 59.99817 * 7 2 1 10 10 C 1.46498 * 120.00110 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47509 * 179.97438 * 10 9 7 12 12 C 1.53349 * 109.42091 * 295.12909 * 11 10 9 13 13 C 1.53193 * 109.14947 * 178.67009 * 12 11 10 14 14 N 1.46932 * 108.89365 * 54.58000 * 13 12 11 15 15 C 1.36929 * 120.62923 * 126.33970 * 14 13 12 16 16 H 1.07994 * 120.00472 * 332.28422 * 15 14 13 17 17 C 1.38823 * 119.99710 * 152.28799 * 15 14 13 18 18 N 1.31617 * 119.99601 * 342.59309 * 17 15 14 19 19 Si 1.86793 * 119.99892 * 162.59877 * 17 15 14 20 20 H 1.48502 * 109.47323 * 94.34576 * 19 17 15 21 21 H 1.48497 * 109.47157 * 214.34797 * 19 17 15 22 22 H 1.48496 * 109.47300 * 334.34614 * 19 17 15 23 23 C 1.46927 * 118.73576 * 306.31982 * 14 13 12 24 24 C 1.53038 * 109.46293 * 174.99544 * 11 10 9 25 25 H 1.09003 * 109.47386 * 59.99513 * 1 2 3 26 26 H 1.08993 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46928 * 299.99871 * 1 2 3 28 28 H 0.96696 * 116.99841 * 179.97438 * 6 4 2 29 29 H 0.96998 * 120.00023 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47215 * 59.99635 * 10 9 7 31 31 H 1.09003 * 109.47121 * 299.99677 * 10 9 7 32 32 H 1.09005 * 109.45806 * 55.02951 * 11 10 9 33 33 H 1.08996 * 109.68615 * 58.70772 * 12 11 10 34 34 H 1.08996 * 109.47201 * 298.50878 * 12 11 10 35 35 H 1.08995 * 109.58815 * 294.71872 * 13 12 11 36 36 H 1.09000 * 109.58606 * 174.43227 * 13 12 11 37 37 H 0.97000 * 119.99465 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.58712 * 173.40018 * 23 14 13 39 39 H 1.09003 * 109.58223 * 293.67509 * 23 14 13 40 40 H 1.09002 * 109.49898 * 61.43965 * 24 11 10 41 41 H 1.09001 * 109.50239 * 301.34052 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.0323 -0.7103 -1.2305 8 8 2.7295 -1.6965 -1.1193 9 7 1.7067 -0.2499 -2.4546 10 6 2.1946 -0.9407 -3.6508 11 6 1.6841 -0.2198 -4.9000 12 6 0.1556 -0.3259 -4.9611 13 6 -0.3514 0.4259 -6.1959 14 7 0.3392 -0.0918 -7.3850 15 6 -0.3728 -0.5399 -8.4654 16 1 -1.3674 -0.9381 -8.3292 17 6 0.1839 -0.4823 -9.7358 18 7 1.2218 0.2940 -9.9648 19 14 -0.5402 -1.5063 -11.1201 20 1 -1.5175 -0.6881 -11.8821 21 1 0.5475 -1.9511 -12.0279 22 1 -1.2263 -2.6938 -10.5507 23 6 1.8082 -0.1192 -7.3928 24 6 2.2941 -0.8653 -6.1463 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 2.0536 -0.7410 3.2088 29 1 1.1487 0.5386 -2.5435 30 1 1.8309 -1.9683 -3.6506 31 1 3.2846 -0.9411 -3.6510 32 1 1.9731 0.8304 -4.8567 33 1 -0.2792 0.1138 -4.0636 34 1 -0.1334 -1.3747 -5.0298 35 1 -0.1429 1.4902 -6.0867 36 1 -1.4254 0.2728 -6.3015 37 1 1.6106 0.3345 -10.8526 38 1 2.1593 -0.6341 -8.2871 39 1 2.1926 0.9007 -7.3839 40 1 1.9852 -1.9091 -6.2036 41 1 3.3813 -0.8098 -6.0898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609700747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -142.615797 kcal Electronic energy + Delta-G solvation = -22720.575506 eV Core-core repulsion = 19213.579438 eV Total energy + Delta-G solvation = -3506.996068 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80364 -40.35409 -39.24785 -37.04593 -36.31898 -34.91780 -34.05980 -32.38579 -31.35432 -28.45725 -26.42379 -25.78898 -23.98092 -23.47366 -22.44967 -21.22029 -20.55178 -19.07784 -18.67685 -17.88191 -17.80302 -16.98007 -16.81935 -16.30194 -16.12863 -15.65618 -15.28925 -15.22411 -14.82622 -14.67501 -14.38468 -13.99934 -13.83843 -13.56432 -13.27379 -13.11748 -12.98035 -12.85376 -12.69273 -12.54445 -12.45232 -12.24757 -12.00447 -11.82063 -11.59651 -11.49280 -11.21024 -11.07533 -10.68215 -10.50917 -10.06791 -8.65369 -7.86444 -5.30071 1.22385 1.45810 1.48350 1.57631 1.59427 1.69553 2.44787 2.52228 3.28297 3.51263 3.73909 3.86495 3.89213 3.96736 4.04595 4.11174 4.40693 4.54266 4.57064 4.72452 4.75045 4.80092 4.81040 4.86470 4.95965 5.05381 5.17013 5.24233 5.31401 5.32545 5.40669 5.47669 5.58014 5.65198 5.67895 5.81438 6.41321 6.54079 7.01433 7.17325 7.26941 7.90601 8.40392 9.19748 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.044862 B = 0.002989 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.979545 B = 9365.488039 C = 9589.112608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.172 0.828 4 C 0.481 3.519 5 O -0.526 6.526 6 O -0.505 6.505 7 C 0.507 3.493 8 O -0.560 6.560 9 N -0.706 5.706 10 C 0.137 3.863 11 C -0.077 4.077 12 C -0.114 4.114 13 C 0.139 3.861 14 N -0.613 5.613 15 C -0.261 4.261 16 H 0.065 0.935 17 C -0.052 4.052 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.271 1.271 23 C 0.178 3.822 24 C -0.124 4.124 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.428 0.572 29 H 0.417 0.583 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.021 0.979 36 H 0.051 0.949 37 H 0.249 0.751 38 H 0.049 0.951 39 H 0.000 1.000 40 H 0.047 0.953 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.943 3.905 22.834 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 H 0.189 0.811 4 C 0.323 3.677 5 O -0.414 6.414 6 O -0.319 6.319 7 C 0.292 3.708 8 O -0.437 6.437 9 N -0.360 5.360 10 C 0.013 3.987 11 C -0.096 4.096 12 C -0.153 4.153 13 C 0.014 3.986 14 N -0.337 5.337 15 C -0.391 4.391 16 H 0.083 0.917 17 C -0.247 4.247 18 N -0.581 5.581 19 Si 0.791 3.209 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.196 1.196 23 C 0.052 3.948 24 C -0.163 4.163 25 H 0.119 0.881 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.290 0.710 29 H 0.256 0.744 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.018 0.982 40 H 0.066 0.934 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.343 3.154 22.405 22.665 hybrid contribution 0.054 -0.606 -0.861 1.054 sum -1.289 2.549 21.543 21.732 Atomic orbital electron populations 1.21810 0.87424 1.03665 1.06594 1.21022 1.01480 1.02726 0.86701 0.81125 1.23057 0.76884 0.82186 0.85616 1.90884 1.36127 1.27072 1.87304 1.84436 1.72140 1.58949 1.16366 1.20498 0.80349 0.84539 0.85377 1.90859 1.38540 1.27481 1.86787 1.45788 1.53537 1.32405 1.04308 1.21249 0.98501 0.95779 0.83153 1.21197 0.96038 0.99996 0.92341 1.21999 0.94549 1.00495 0.98273 1.21092 0.95723 0.95054 0.86750 1.44347 1.01860 1.73064 1.14425 1.19505 1.00302 1.33173 0.86126 0.91743 1.25749 0.99634 0.99928 0.99424 1.70176 1.27108 1.39565 1.21242 0.85332 0.77252 0.78998 0.79305 1.21184 1.22016 1.19638 1.20556 0.83136 0.95683 0.95437 1.21983 0.99522 0.99402 0.95417 0.88064 0.92947 0.87911 0.70983 0.74440 0.92910 0.92246 0.90025 0.88986 0.93380 0.96105 0.93036 0.94189 0.93266 0.98205 0.93397 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.02 71.98 0.65 -0.52 16 2 C -0.10 -1.36 3.16 -12.29 -0.04 -1.40 16 3 H 0.17 1.10 8.14 -2.38 -0.02 1.08 16 4 C 0.48 9.31 7.62 71.23 0.54 9.85 16 5 O -0.53 -16.22 14.94 29.71 0.44 -15.78 16 6 O -0.50 -5.64 13.33 -51.46 -0.69 -6.33 16 7 C 0.51 11.81 7.15 87.66 0.63 12.43 16 8 O -0.56 -19.82 14.19 20.41 0.29 -19.53 16 9 N -0.71 -13.62 5.17 -463.07 -2.39 -16.02 16 10 C 0.14 3.49 5.06 86.38 0.44 3.92 16 11 C -0.08 -2.14 2.19 -10.67 -0.02 -2.16 16 12 C -0.11 -3.23 5.27 30.78 0.16 -3.07 16 13 C 0.14 5.24 6.50 86.36 0.56 5.81 16 14 N -0.61 -29.92 3.00 -699.08 -2.09 -32.01 16 15 C -0.26 -14.22 9.58 84.04 0.81 -13.42 16 16 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 17 C -0.05 -2.91 4.91 84.87 0.42 -2.49 16 18 N -0.93 -55.14 11.19 21.65 0.24 -54.90 16 19 Si 0.96 44.90 29.59 68.60 2.03 46.93 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.18 8.35 5.31 86.36 0.46 8.80 16 24 C -0.12 -4.43 5.36 30.67 0.16 -4.26 16 25 H 0.10 0.46 7.56 -2.39 -0.02 0.44 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.51 8.11 -2.38 -0.02 0.49 16 28 H 0.43 1.73 9.10 -74.06 -0.67 1.06 16 29 H 0.42 5.12 7.07 -92.71 -0.66 4.46 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.09 1.82 7.16 -2.39 -0.02 1.80 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 37 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.05 2.68 6.04 -2.39 -0.01 2.66 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -80.53 334.46 2.31 -78.22 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -0.28 Total: 5.92 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.76 Total: 13.49 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -4.24 Total: -102.93 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: 0.05 Total: -41.64 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -80.53 2.31 -78.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609700747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.393 kcal (2) G-P(sol) polarization free energy of solvation -80.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds