Wall clock time and date at job start Tue Mar 31 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47206 * 2 1 4 4 C 1.50697 * 109.47060 * 239.99757 * 2 1 3 5 5 O 1.20826 * 120.00316 * 240.00081 * 4 2 1 6 6 O 1.34232 * 119.99917 * 60.00288 * 4 2 1 7 7 C 1.50706 * 109.46975 * 120.00204 * 2 1 3 8 8 O 1.21277 * 120.00109 * 119.99863 * 7 2 1 9 9 N 1.34772 * 119.99783 * 299.72217 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47522 * 179.97438 * 10 9 7 12 12 C 1.53036 * 109.46176 * 295.02851 * 11 10 9 13 13 C 1.53185 * 109.31642 * 178.59915 * 12 11 10 14 14 N 1.46926 * 108.76325 * 54.64955 * 13 12 11 15 15 C 1.36941 * 120.62937 * 126.36636 * 14 13 12 16 16 H 1.08003 * 120.00322 * 208.02729 * 15 14 13 17 17 C 1.38813 * 119.99955 * 28.01801 * 15 14 13 18 18 N 1.31612 * 120.00144 * 17.52910 * 17 15 14 19 19 Si 1.86807 * 120.00058 * 197.52646 * 17 15 14 20 20 H 1.48501 * 109.46697 * 94.07113 * 19 17 15 21 21 H 1.48498 * 109.46947 * 214.06653 * 19 17 15 22 22 H 1.48496 * 109.47155 * 334.07180 * 19 17 15 23 23 C 1.46919 * 118.74206 * 306.38890 * 14 13 12 24 24 C 1.53037 * 109.46084 * 174.96891 * 11 10 9 25 25 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46749 * 300.00007 * 1 2 3 27 27 H 1.08994 * 109.46904 * 59.99363 * 1 2 3 28 28 H 0.96696 * 117.00041 * 180.02562 * 6 4 2 29 29 H 0.97000 * 120.00500 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46634 * 299.99781 * 10 9 7 31 31 H 1.08995 * 109.47417 * 59.99587 * 10 9 7 32 32 H 1.09000 * 109.45769 * 54.99794 * 11 10 9 33 33 H 1.08999 * 109.49424 * 298.56481 * 12 11 10 34 34 H 1.09001 * 109.50013 * 58.65754 * 12 11 10 35 35 H 1.09004 * 109.59621 * 294.86763 * 13 12 11 36 36 H 1.08997 * 109.70757 * 174.50460 * 13 12 11 37 37 H 0.97003 * 120.00527 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.59001 * 293.81718 * 23 14 13 39 39 H 1.09003 * 109.70746 * 173.46762 * 23 14 13 40 40 H 1.09004 * 109.50014 * 301.33920 * 24 11 10 41 41 H 1.09001 * 109.49538 * 61.43602 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.0324 -0.7105 1.2305 8 8 2.7296 -1.6966 1.1192 9 7 1.7114 -0.2468 2.4545 10 6 2.2001 -0.9371 3.6507 11 6 1.6962 -0.2115 4.9000 12 6 2.3117 1.1883 4.9597 13 6 1.7780 1.9243 6.1926 14 7 2.0347 1.1012 7.3823 15 6 2.6998 1.6215 8.4604 16 1 3.2747 0.9729 9.1047 17 6 2.6352 2.9827 8.7249 18 7 1.6886 3.7152 8.1777 19 14 3.8918 3.7747 9.8578 20 1 5.0094 4.3250 9.0494 21 1 3.2467 4.8722 10.6223 22 1 4.4183 2.7566 10.8019 23 6 1.5649 -0.2907 7.3931 24 6 2.1007 -1.0018 6.1466 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 2.0535 -0.7410 -3.2088 29 1 1.1567 0.5440 2.5436 30 1 1.8330 -1.9634 3.6533 31 1 3.2900 -0.9410 3.6482 32 1 0.6101 -0.1292 4.8588 33 1 3.3965 1.1062 5.0260 34 1 2.0427 1.7427 4.0606 35 1 0.7055 2.0871 6.0854 36 1 2.2847 2.8839 6.2958 37 1 1.6431 4.6664 8.3629 38 1 0.4751 -0.3087 7.3839 39 1 1.9309 -0.7953 8.2873 40 1 1.6815 -2.0065 6.0923 41 1 3.1876 -1.0631 6.2016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609700748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:21 Heat of formation + Delta-G solvation = -117.717842 kcal Electronic energy + Delta-G solvation = -22744.269526 eV Core-core repulsion = 19238.353115 eV Total energy + Delta-G solvation = -3505.916411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92811 -39.35389 -37.82126 -36.23065 -34.92256 -33.95299 -32.68051 -30.58208 -29.87237 -26.95643 -25.71085 -24.18561 -22.70144 -22.17162 -21.02643 -20.17648 -19.09918 -18.29361 -17.06547 -17.03247 -16.64782 -16.10855 -15.38216 -15.13479 -14.83963 -14.19142 -13.90914 -13.77578 -13.58312 -13.51221 -13.14834 -12.65966 -12.60081 -12.41623 -12.36243 -12.12442 -11.79439 -11.65163 -11.41158 -11.00772 -10.74920 -10.67213 -10.53180 -10.25846 -10.22501 -9.93764 -9.73008 -9.55176 -9.45245 -8.99803 -8.48612 -6.69154 -5.81107 -3.22923 2.00699 2.45303 2.55799 3.28507 3.36643 3.44078 3.45239 4.33799 4.48486 4.49321 4.60452 4.98355 5.11432 5.22478 5.22874 5.33775 5.34007 5.40857 5.56419 5.67140 5.85664 5.90427 6.03907 6.13117 6.25827 6.26956 6.39257 6.50535 6.54951 6.65150 6.73927 6.80060 6.96873 7.32849 7.44728 7.61633 7.69014 7.78454 8.17879 8.43450 9.19865 9.83373 10.39890 11.27443 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031501 B = 0.003168 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.641205 B = 8837.561086 C = 9134.678405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.134 0.866 4 C 0.479 3.521 5 O -0.469 6.469 6 O -0.520 6.520 7 C 0.511 3.489 8 O -0.504 6.504 9 N -0.720 5.720 10 C 0.125 3.875 11 C -0.090 4.090 12 C -0.135 4.135 13 C 0.171 3.829 14 N -0.593 5.593 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.146 3.854 24 C -0.125 4.125 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.411 0.589 29 H 0.401 0.599 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.017 0.983 36 H 0.086 0.914 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 -5.234 -17.482 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.152 0.848 4 C 0.317 3.683 5 O -0.352 6.352 6 O -0.333 6.333 7 C 0.294 3.706 8 O -0.377 6.377 9 N -0.373 5.373 10 C 0.002 3.998 11 C -0.109 4.109 12 C -0.175 4.175 13 C 0.045 3.955 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.020 3.980 24 C -0.165 4.165 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.270 0.730 29 H 0.236 0.764 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.035 0.965 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.423 -5.878 -17.119 18.421 hybrid contribution 0.581 0.667 0.073 0.888 sum -2.842 -5.211 -17.046 18.050 Atomic orbital electron populations 1.21741 0.89700 1.03885 1.04543 1.20949 0.99974 1.02102 0.89769 0.84829 1.22638 0.78188 0.83111 0.84325 1.90882 1.33354 1.24506 1.86449 1.84479 1.72789 1.59309 1.16684 1.19788 0.81417 0.85209 0.84182 1.90862 1.35911 1.24998 1.85974 1.45972 1.54026 1.32061 1.05291 1.21578 0.99444 0.95723 0.83033 1.21310 1.00200 0.96492 0.92918 1.22258 1.00603 0.94723 0.99867 1.20761 0.97120 0.94839 0.82796 1.44055 1.65785 1.07426 1.14280 1.19217 1.22163 0.91803 1.04948 0.91683 1.25029 0.97655 0.97884 0.99101 1.70032 1.31142 1.06228 1.47373 0.86283 0.81194 0.79054 0.80309 1.21492 1.21796 1.20386 1.20877 0.95667 0.86757 0.94716 1.21989 1.01323 0.97454 0.95718 0.91451 0.90165 0.89960 0.72995 0.76362 0.91848 0.91534 0.91253 0.92479 0.93594 0.96524 0.89553 0.93688 0.96528 0.92739 0.92911 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.02 37.16 0.34 -0.59 16 2 C -0.11 -0.96 3.16 -92.92 -0.29 -1.26 16 3 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 4 C 0.48 5.24 7.62 36.00 0.27 5.51 16 5 O -0.47 -7.33 14.94 -26.86 -0.40 -7.74 16 6 O -0.52 -3.81 13.33 -39.26 -0.52 -4.33 16 7 C 0.51 6.66 7.15 -10.98 -0.08 6.58 16 8 O -0.50 -9.05 14.19 -18.95 -0.27 -9.32 16 9 N -0.72 -8.42 5.17 -60.29 -0.31 -8.73 16 10 C 0.13 1.72 5.06 -4.04 -0.02 1.70 16 11 C -0.09 -1.36 2.19 -90.58 -0.20 -1.55 16 12 C -0.14 -2.34 5.25 -26.62 -0.14 -2.48 16 13 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 14 N -0.59 -14.40 2.99 -172.33 -0.52 -14.92 16 15 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 16 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 18 N -0.90 -25.67 11.22 55.49 0.62 -25.05 16 19 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.15 2.95 6.51 -3.72 -0.02 2.93 16 24 C -0.13 -2.05 5.36 -26.61 -0.14 -2.19 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.42 7.58 -51.93 -0.39 0.03 16 27 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 28 H 0.41 1.41 9.10 45.56 0.41 1.83 16 29 H 0.40 3.75 7.09 -40.82 -0.29 3.46 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.68 7.15 -51.93 -0.37 0.30 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 2.22 6.06 -51.93 -0.31 1.90 16 37 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 1.09 7.94 -51.93 -0.41 0.68 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -34.99 334.51 -7.49 -42.48 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.56 Total: 0.65 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.54 Total: 5.49 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.20 Total: -48.70 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.19 Total: -21.39 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.99 -7.49 -42.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609700748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.241 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds