Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47206 * 2 1 4 4 C 1.50697 * 109.47060 * 239.99757 * 2 1 3 5 5 O 1.20826 * 120.00316 * 240.00081 * 4 2 1 6 6 O 1.34232 * 119.99917 * 60.00288 * 4 2 1 7 7 C 1.50706 * 109.46975 * 120.00204 * 2 1 3 8 8 O 1.21277 * 120.00109 * 119.99863 * 7 2 1 9 9 N 1.34772 * 119.99783 * 299.72217 * 7 2 1 10 10 C 1.46500 * 120.00130 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47522 * 179.97438 * 10 9 7 12 12 C 1.53036 * 109.46176 * 295.02851 * 11 10 9 13 13 C 1.53185 * 109.31642 * 178.59915 * 12 11 10 14 14 N 1.46926 * 108.76325 * 54.64955 * 13 12 11 15 15 C 1.36941 * 120.62937 * 126.36636 * 14 13 12 16 16 H 1.08003 * 120.00322 * 208.02729 * 15 14 13 17 17 C 1.38813 * 119.99955 * 28.01801 * 15 14 13 18 18 N 1.31612 * 120.00144 * 17.52910 * 17 15 14 19 19 Si 1.86807 * 120.00058 * 197.52646 * 17 15 14 20 20 H 1.48501 * 109.46697 * 94.07113 * 19 17 15 21 21 H 1.48498 * 109.46947 * 214.06653 * 19 17 15 22 22 H 1.48496 * 109.47155 * 334.07180 * 19 17 15 23 23 C 1.46919 * 118.74206 * 306.38890 * 14 13 12 24 24 C 1.53037 * 109.46084 * 174.96891 * 11 10 9 25 25 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46749 * 300.00007 * 1 2 3 27 27 H 1.08994 * 109.46904 * 59.99363 * 1 2 3 28 28 H 0.96696 * 117.00041 * 180.02562 * 6 4 2 29 29 H 0.97000 * 120.00500 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46634 * 299.99781 * 10 9 7 31 31 H 1.08995 * 109.47417 * 59.99587 * 10 9 7 32 32 H 1.09000 * 109.45769 * 54.99794 * 11 10 9 33 33 H 1.08999 * 109.49424 * 298.56481 * 12 11 10 34 34 H 1.09001 * 109.50013 * 58.65754 * 12 11 10 35 35 H 1.09004 * 109.59621 * 294.86763 * 13 12 11 36 36 H 1.08997 * 109.70757 * 174.50460 * 13 12 11 37 37 H 0.97003 * 120.00527 * 179.97438 * 18 17 15 38 38 H 1.09000 * 109.59001 * 293.81718 * 23 14 13 39 39 H 1.09003 * 109.70746 * 173.46762 * 23 14 13 40 40 H 1.09004 * 109.50014 * 301.33920 * 24 11 10 41 41 H 1.09001 * 109.49538 * 61.43602 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.0324 -0.7105 1.2305 8 8 2.7296 -1.6966 1.1192 9 7 1.7114 -0.2468 2.4545 10 6 2.2001 -0.9371 3.6507 11 6 1.6962 -0.2115 4.9000 12 6 2.3117 1.1883 4.9597 13 6 1.7780 1.9243 6.1926 14 7 2.0347 1.1012 7.3823 15 6 2.6998 1.6215 8.4604 16 1 3.2747 0.9729 9.1047 17 6 2.6352 2.9827 8.7249 18 7 1.6886 3.7152 8.1777 19 14 3.8918 3.7747 9.8578 20 1 5.0094 4.3250 9.0494 21 1 3.2467 4.8722 10.6223 22 1 4.4183 2.7566 10.8019 23 6 1.5649 -0.2907 7.3931 24 6 2.1007 -1.0018 6.1466 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 2.0535 -0.7410 -3.2088 29 1 1.1567 0.5440 2.5436 30 1 1.8330 -1.9634 3.6533 31 1 3.2900 -0.9410 3.6482 32 1 0.6101 -0.1292 4.8588 33 1 3.3965 1.1062 5.0260 34 1 2.0427 1.7427 4.0606 35 1 0.7055 2.0871 6.0854 36 1 2.2847 2.8839 6.2958 37 1 1.6431 4.6664 8.3629 38 1 0.4751 -0.3087 7.3839 39 1 1.9309 -0.7953 8.2873 40 1 1.6815 -2.0065 6.0923 41 1 3.1876 -1.0631 6.2016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609700748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -142.548832 kcal Electronic energy + Delta-G solvation = -22745.346278 eV Core-core repulsion = 19238.353115 eV Total energy + Delta-G solvation = -3506.993164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81031 -40.36128 -39.26035 -37.05186 -36.31004 -34.93540 -34.10144 -32.22727 -31.48995 -28.44313 -26.43821 -25.77995 -23.93940 -23.54516 -22.42450 -21.22452 -20.54764 -19.08691 -18.69913 -17.89373 -17.78303 -16.99780 -16.78307 -16.34376 -16.16228 -15.69941 -15.28570 -15.04422 -14.90839 -14.72284 -14.39360 -13.97398 -13.78494 -13.59390 -13.26682 -13.13295 -13.04581 -12.81710 -12.74200 -12.56605 -12.45948 -12.26369 -11.94241 -11.81722 -11.58655 -11.50728 -11.18618 -11.10609 -10.67691 -10.51606 -10.06610 -8.64880 -7.86248 -5.30245 1.21356 1.46635 1.48577 1.57024 1.58628 1.68878 2.44519 2.52221 3.27759 3.50307 3.73918 3.86152 3.89202 3.97816 4.03762 4.08973 4.40156 4.55478 4.57263 4.71086 4.76231 4.77661 4.79698 4.84674 4.95551 5.06697 5.19514 5.22584 5.27910 5.32095 5.42741 5.44947 5.58321 5.64223 5.68840 5.83065 6.41736 6.52224 7.00612 7.18112 7.24948 7.90398 8.40316 9.19573 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.031501 B = 0.003168 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.641205 B = 8837.561086 C = 9134.678405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.167 0.833 4 C 0.483 3.517 5 O -0.525 6.525 6 O -0.505 6.505 7 C 0.508 3.492 8 O -0.558 6.558 9 N -0.709 5.709 10 C 0.137 3.863 11 C -0.077 4.077 12 C -0.121 4.121 13 C 0.176 3.824 14 N -0.613 5.613 15 C -0.263 4.263 16 H 0.062 0.938 17 C -0.048 4.048 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.271 1.271 23 C 0.142 3.858 24 C -0.117 4.117 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.429 0.571 29 H 0.416 0.584 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.003 0.997 36 H 0.049 0.951 37 H 0.250 0.750 38 H 0.018 0.982 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -5.071 -18.800 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.184 0.816 4 C 0.324 3.676 5 O -0.412 6.412 6 O -0.319 6.319 7 C 0.294 3.706 8 O -0.435 6.435 9 N -0.363 5.363 10 C 0.013 3.987 11 C -0.096 4.096 12 C -0.160 4.160 13 C 0.050 3.950 14 N -0.337 5.337 15 C -0.393 4.393 16 H 0.079 0.921 17 C -0.244 4.244 18 N -0.577 5.577 19 Si 0.791 3.209 20 H -0.214 1.214 21 H -0.221 1.221 22 H -0.196 1.196 23 C 0.016 3.984 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.290 0.710 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.173 -5.699 -18.466 19.770 hybrid contribution 0.753 0.609 0.455 1.070 sum -3.419 -5.090 -18.010 19.026 Atomic orbital electron populations 1.21795 0.87345 1.03764 1.06460 1.21031 1.01610 1.02627 0.86940 0.81577 1.23002 0.76890 0.82165 0.85560 1.90876 1.36038 1.27043 1.87292 1.84439 1.72131 1.58963 1.16364 1.20446 0.80340 0.84552 0.85310 1.90849 1.38372 1.27512 1.86770 1.45840 1.53695 1.32214 1.04521 1.21289 0.98520 0.95864 0.83039 1.21157 1.00693 0.94762 0.93002 1.22052 0.99508 0.95989 0.98462 1.20613 0.95939 0.93960 0.84488 1.44352 1.66053 1.09027 1.14267 1.19498 1.22135 0.92172 1.05525 0.92072 1.25715 0.99328 0.98393 1.00970 1.70163 1.32606 1.06074 1.48888 0.85328 0.78924 0.78004 0.78653 1.21395 1.22060 1.19579 1.21029 0.95750 0.85001 0.96603 1.21867 1.00720 0.98680 0.94365 0.92591 0.88331 0.87994 0.70950 0.74651 0.91513 0.93033 0.89951 0.93926 0.90528 0.97888 0.93213 0.94109 0.96365 0.93215 0.89898 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.02 71.98 0.65 -0.65 16 2 C -0.10 -1.55 3.16 -12.28 -0.04 -1.59 16 3 H 0.17 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.48 9.77 7.62 71.24 0.54 10.31 16 5 O -0.52 -16.42 14.94 29.72 0.44 -15.98 16 6 O -0.50 -6.10 13.33 -51.44 -0.69 -6.79 16 7 C 0.51 12.36 7.15 87.66 0.63 12.98 16 8 O -0.56 -19.91 14.19 20.42 0.29 -19.62 16 9 N -0.71 -14.70 5.17 -463.06 -2.39 -17.09 16 10 C 0.14 3.45 5.06 86.38 0.44 3.89 16 11 C -0.08 -2.14 2.19 -10.77 -0.02 -2.17 16 12 C -0.12 -4.02 5.25 30.67 0.16 -3.86 16 13 C 0.18 7.93 5.31 86.36 0.46 8.39 16 14 N -0.61 -29.97 2.99 -699.12 -2.09 -32.06 16 15 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 16 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 17 C -0.05 -2.68 4.90 84.86 0.42 -2.26 16 18 N -0.93 -53.91 11.22 21.65 0.24 -53.66 16 19 Si 0.96 44.61 29.59 68.60 2.03 46.64 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.14 5.61 6.51 86.36 0.56 6.17 16 24 C -0.12 -3.62 5.36 30.67 0.16 -3.46 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.10 0.61 7.58 -2.39 -0.02 0.59 16 27 H 0.10 0.63 8.11 -2.39 -0.02 0.61 16 28 H 0.43 2.02 9.10 -74.06 -0.67 1.34 16 29 H 0.42 6.22 7.09 -92.71 -0.66 5.56 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.05 7.15 -2.39 -0.02 2.04 16 35 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.05 2.61 6.06 -2.39 -0.01 2.59 16 37 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 1.97 7.94 -2.39 -0.02 1.95 16 40 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -78.68 334.51 2.31 -76.37 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -0.29 Total: 8.00 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 4.76 Total: 14.19 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -4.24 Total: -102.81 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: 0.05 Total: -42.38 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -78.68 2.31 -76.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609700748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.182 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds