Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.99553 * 2 1 4 4 C 1.54337 * 109.99255 * 238.96546 * 2 1 3 5 5 H 1.09001 * 110.51183 * 336.97621 * 4 2 1 6 6 C 1.50702 * 111.00292 * 100.12437 * 4 2 1 7 7 O 1.20825 * 119.99720 * 355.23180 * 6 4 2 8 8 O 1.34223 * 120.00092 * 175.23706 * 6 4 2 9 9 C 1.55155 * 103.02179 * 218.66457 * 4 2 1 10 10 C 1.54912 * 101.58156 * 35.30251 * 9 4 2 11 11 N 1.47014 * 109.88398 * 121.09570 * 2 1 3 12 12 C 1.34774 * 125.65287 * 298.39566 * 11 2 1 13 13 O 1.21588 * 119.99955 * 359.71970 * 12 11 2 14 14 N 1.34779 * 120.00609 * 179.71572 * 12 11 2 15 15 C 1.46496 * 120.00107 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.46953 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47418 * 89.99710 * 22 20 18 24 24 H 1.48498 * 109.47091 * 209.99770 * 22 20 18 25 25 H 1.48508 * 109.47394 * 329.99535 * 22 20 18 26 26 H 1.08998 * 109.46915 * 300.35278 * 1 2 3 27 27 H 1.08996 * 109.47064 * 60.35520 * 1 2 3 28 28 H 1.09003 * 109.46529 * 180.35867 * 1 2 3 29 29 H 0.96695 * 117.00201 * 180.02562 * 8 6 4 30 30 H 1.08997 * 111.00396 * 277.23148 * 9 4 2 31 31 H 1.09001 * 111.00560 * 153.37961 * 9 4 2 32 32 H 1.08993 * 110.36736 * 204.15266 * 10 9 4 33 33 H 1.09007 * 110.45473 * 81.87805 * 10 9 4 34 34 H 0.96999 * 119.99538 * 359.97438 * 14 12 11 35 35 H 1.08996 * 109.47565 * 60.00082 * 15 14 12 36 36 H 1.09001 * 109.47062 * 299.99546 * 15 14 12 37 37 H 1.09001 * 109.47502 * 60.00124 * 16 15 14 38 38 H 1.09001 * 109.47289 * 299.99920 * 16 15 14 39 39 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 40 40 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 41 41 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2428 5 1 1.3053 -1.4405 -1.6197 6 6 2.4748 0.2209 -2.3193 7 8 2.2904 1.4057 -2.1703 8 8 3.0510 -0.2325 -3.4436 9 6 3.2864 -1.5183 -0.6916 10 6 2.8101 -1.8825 0.7368 11 7 2.0301 -0.7140 1.1838 12 6 1.8075 -0.3621 2.4656 13 8 1.1459 0.6262 2.7186 14 7 2.3182 -1.1056 3.4671 15 6 2.0757 -0.7233 4.8604 16 6 2.7608 -1.7260 5.7910 17 6 2.5082 -1.3264 7.2461 18 6 3.1835 -2.3137 8.1627 19 1 3.7372 -3.1435 7.7488 20 6 3.0937 -2.1583 9.5297 21 7 2.4191 -1.1481 10.0338 22 14 3.9302 -3.3825 10.6659 23 1 5.3132 -2.9251 10.9544 24 1 3.1665 -3.4812 11.9356 25 1 3.9758 -4.7146 10.0109 26 1 -0.3633 0.5193 0.8868 27 1 -0.3633 0.5083 -0.8931 28 1 -0.3632 -1.0277 0.0064 29 1 3.3016 0.4267 -4.1051 30 1 4.1670 -0.8768 -0.6580 31 1 3.4808 -2.4155 -1.2793 32 1 3.6656 -2.0411 1.3931 33 1 2.1807 -2.7722 0.7132 34 1 2.8456 -1.8942 3.2653 35 1 1.0033 -0.7204 5.0551 36 1 2.4802 0.2730 5.0394 37 1 3.8333 -1.7284 5.5963 38 1 2.3569 -2.7225 5.6121 39 1 2.9125 -0.3300 7.4247 40 1 1.4358 -1.3237 7.4412 41 1 2.3555 -1.0390 10.9955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609832298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = -133.415789 kcal Electronic energy + Delta-G solvation = -22223.458423 eV Core-core repulsion = 18716.861298 eV Total energy + Delta-G solvation = -3506.597125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20950 -39.98083 -37.83346 -36.53077 -35.34596 -33.42536 -32.32932 -31.64981 -30.75286 -27.26771 -26.46665 -23.92753 -23.18440 -22.57016 -20.86872 -20.59147 -19.42224 -18.59941 -17.99705 -17.32152 -16.44931 -16.02717 -15.89228 -15.54152 -14.88448 -14.48683 -14.31617 -14.05529 -13.96951 -13.84490 -13.30178 -13.03677 -12.63550 -12.32135 -12.24284 -12.03193 -11.91941 -11.75984 -11.67309 -11.44623 -11.17548 -10.90432 -10.86923 -10.70717 -10.58691 -10.03963 -9.85303 -9.43557 -9.11947 -8.96408 -8.51254 -8.36608 -6.01134 -4.04296 1.73092 2.27346 2.80809 3.30996 3.33594 3.37386 3.39966 3.76398 3.96040 4.14908 4.43915 4.45410 4.71828 4.78478 4.89389 5.12949 5.17552 5.27198 5.33161 5.34588 5.48371 5.57215 5.67753 5.82294 5.86653 6.00034 6.10056 6.19371 6.22550 6.54339 6.63101 6.83637 7.02634 7.08108 7.42334 7.64631 7.77608 7.97783 8.07525 8.38589 8.73527 9.02424 9.59791 11.10181 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040855 B = 0.002590 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.182633 B =10807.416976 C =11219.439004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 H 0.093 0.907 4 C -0.095 4.095 5 H 0.126 0.874 6 C 0.490 3.510 7 O -0.505 6.505 8 O -0.514 6.514 9 C -0.117 4.117 10 C 0.098 3.902 11 N -0.639 5.639 12 C 0.721 3.279 13 O -0.584 6.584 14 N -0.739 5.739 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.412 0.588 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.393 0.607 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -2.768 -27.946 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.062 3.938 3 H 0.111 0.889 4 C -0.115 4.115 5 H 0.144 0.856 6 C 0.332 3.668 7 O -0.392 6.392 8 O -0.326 6.326 9 C -0.155 4.155 10 C -0.026 4.026 11 N -0.379 5.379 12 C 0.423 3.577 13 O -0.461 6.461 14 N -0.393 5.393 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.272 0.728 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.415 -1.871 -27.105 27.173 hybrid contribution 0.886 -0.628 0.109 1.091 sum 1.301 -2.500 -26.995 27.142 Atomic orbital electron populations 1.22167 0.93954 1.02326 1.03623 1.21157 0.94983 0.96500 0.81196 0.88887 1.22093 1.00632 0.96704 0.92058 0.85599 1.22977 0.73664 0.88399 0.81802 1.90773 1.51378 1.18339 1.78710 1.84506 1.72861 1.45945 1.29266 1.22765 0.96142 1.01045 0.95530 1.22306 0.95839 0.89447 0.94990 1.47611 1.56775 1.29593 1.03943 1.15451 0.80278 0.83029 0.78965 1.90924 1.44699 1.28160 1.82318 1.45408 1.57178 1.30556 1.06195 1.21533 1.00868 0.99416 0.77019 1.21887 0.99068 0.97154 0.97658 1.19028 0.97453 0.97080 0.87817 1.21199 1.32777 1.10956 0.91106 0.92667 1.25031 0.95446 0.95609 0.98407 1.69963 1.41269 1.29745 1.12276 0.86583 0.79470 0.81564 0.80289 1.20670 1.21215 1.19914 0.90135 0.91796 0.92422 0.72848 0.89853 0.88256 0.90049 0.90791 0.77342 0.91872 0.91901 0.92804 0.92780 0.96232 0.96219 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.11 37.16 0.34 -1.41 16 2 C 0.17 1.80 2.87 -66.95 -0.19 1.61 16 3 H 0.09 1.26 6.89 -51.93 -0.36 0.90 16 4 C -0.10 -0.67 2.97 -89.93 -0.27 -0.94 16 5 H 0.13 0.63 7.84 -51.93 -0.41 0.22 16 6 C 0.49 3.92 7.64 36.01 0.27 4.19 16 7 O -0.50 -5.90 16.24 -18.75 -0.30 -6.21 16 8 O -0.51 -2.64 13.41 -39.24 -0.53 -3.17 16 9 C -0.12 -0.66 6.51 -24.58 -0.16 -0.82 16 10 C 0.10 0.72 6.57 -2.53 -0.02 0.70 16 11 N -0.64 -7.51 3.06 -168.68 -0.52 -8.03 16 12 C 0.72 11.50 8.28 -86.92 -0.72 10.78 16 13 O -0.58 -11.75 15.39 5.29 0.08 -11.67 16 14 N -0.74 -11.02 5.52 -65.23 -0.36 -11.38 16 15 C 0.13 2.43 5.67 -4.05 -0.02 2.40 16 16 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.08 1.12 6.89 -51.93 -0.36 0.76 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.41 0.56 9.10 45.56 0.41 0.97 16 30 H 0.08 0.51 8.04 -51.93 -0.42 0.10 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.54 7.30 -51.93 -0.38 0.16 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 4.70 6.95 -40.82 -0.28 4.42 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -35.93 342.67 -7.76 -43.69 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.56 Total: 0.16 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.46 Total: 1.15 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.14 Total: -45.56 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.75 Total: -21.04 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.93 -7.76 -43.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609832298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.725 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds