Wall clock time and date at job start Tue Mar 31 2020 06:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.99553 * 2 1 4 4 C 1.54337 * 109.99255 * 238.96546 * 2 1 3 5 5 H 1.09001 * 110.51183 * 336.97621 * 4 2 1 6 6 C 1.50702 * 111.00292 * 100.12437 * 4 2 1 7 7 O 1.20825 * 119.99720 * 355.23180 * 6 4 2 8 8 O 1.34223 * 120.00092 * 175.23706 * 6 4 2 9 9 C 1.55155 * 103.02179 * 218.66457 * 4 2 1 10 10 C 1.54912 * 101.58156 * 35.30251 * 9 4 2 11 11 N 1.47014 * 109.88398 * 121.09570 * 2 1 3 12 12 C 1.34774 * 125.65287 * 298.39566 * 11 2 1 13 13 O 1.21588 * 119.99955 * 359.71970 * 12 11 2 14 14 N 1.34779 * 120.00609 * 179.71572 * 12 11 2 15 15 C 1.46496 * 120.00107 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.46953 * 180.02562 * 15 14 12 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99819 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00046 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47418 * 89.99710 * 22 20 18 24 24 H 1.48498 * 109.47091 * 209.99770 * 22 20 18 25 25 H 1.48508 * 109.47394 * 329.99535 * 22 20 18 26 26 H 1.08998 * 109.46915 * 300.35278 * 1 2 3 27 27 H 1.08996 * 109.47064 * 60.35520 * 1 2 3 28 28 H 1.09003 * 109.46529 * 180.35867 * 1 2 3 29 29 H 0.96695 * 117.00201 * 180.02562 * 8 6 4 30 30 H 1.08997 * 111.00396 * 277.23148 * 9 4 2 31 31 H 1.09001 * 111.00560 * 153.37961 * 9 4 2 32 32 H 1.08993 * 110.36736 * 204.15266 * 10 9 4 33 33 H 1.09007 * 110.45473 * 81.87805 * 10 9 4 34 34 H 0.96999 * 119.99538 * 359.97438 * 14 12 11 35 35 H 1.08996 * 109.47565 * 60.00082 * 15 14 12 36 36 H 1.09001 * 109.47062 * 299.99546 * 15 14 12 37 37 H 1.09001 * 109.47502 * 60.00124 * 16 15 14 38 38 H 1.09001 * 109.47289 * 299.99920 * 16 15 14 39 39 H 1.09001 * 109.47002 * 299.99574 * 17 16 15 40 40 H 1.08993 * 109.46955 * 60.00011 * 17 16 15 41 41 H 0.96996 * 120.00505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2428 5 1 1.3053 -1.4405 -1.6197 6 6 2.4748 0.2209 -2.3193 7 8 2.2904 1.4057 -2.1703 8 8 3.0510 -0.2325 -3.4436 9 6 3.2864 -1.5183 -0.6916 10 6 2.8101 -1.8825 0.7368 11 7 2.0301 -0.7140 1.1838 12 6 1.8075 -0.3621 2.4656 13 8 1.1459 0.6262 2.7186 14 7 2.3182 -1.1056 3.4671 15 6 2.0757 -0.7233 4.8604 16 6 2.7608 -1.7260 5.7910 17 6 2.5082 -1.3264 7.2461 18 6 3.1835 -2.3137 8.1627 19 1 3.7372 -3.1435 7.7488 20 6 3.0937 -2.1583 9.5297 21 7 2.4191 -1.1481 10.0338 22 14 3.9302 -3.3825 10.6659 23 1 5.3132 -2.9251 10.9544 24 1 3.1665 -3.4812 11.9356 25 1 3.9758 -4.7146 10.0109 26 1 -0.3633 0.5193 0.8868 27 1 -0.3633 0.5083 -0.8931 28 1 -0.3632 -1.0277 0.0064 29 1 3.3016 0.4267 -4.1051 30 1 4.1670 -0.8768 -0.6580 31 1 3.4808 -2.4155 -1.2793 32 1 3.6656 -2.0411 1.3931 33 1 2.1807 -2.7722 0.7132 34 1 2.8456 -1.8942 3.2653 35 1 1.0033 -0.7204 5.0551 36 1 2.4802 0.2730 5.0394 37 1 3.8333 -1.7284 5.5963 38 1 2.3569 -2.7225 5.6121 39 1 2.9125 -0.3300 7.4247 40 1 1.4358 -1.3237 7.4412 41 1 2.3555 -1.0390 10.9955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609832298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:08 Heat of formation + Delta-G solvation = -159.859033 kcal Electronic energy + Delta-G solvation = -22224.605088 eV Core-core repulsion = 18716.861298 eV Total energy + Delta-G solvation = -3507.743791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96067 -40.93871 -38.77740 -37.11797 -36.91113 -35.23591 -33.62924 -32.49025 -32.15941 -28.62144 -27.68016 -25.32107 -24.09799 -23.62574 -22.28034 -21.62659 -20.47770 -19.42019 -18.78817 -18.47283 -18.06992 -17.02524 -16.88998 -16.62064 -16.45441 -16.00384 -15.43379 -15.26566 -14.86549 -14.51979 -14.31224 -14.16012 -13.83208 -13.72334 -13.56983 -13.28675 -12.93099 -12.74352 -12.67295 -12.56717 -12.52929 -12.35022 -12.07661 -11.86544 -11.66159 -11.59958 -11.53498 -11.27605 -11.12134 -10.54409 -10.25433 -9.55948 -8.18224 -6.29865 1.13719 1.38929 1.43149 1.44326 1.55310 2.06480 2.14828 2.43006 2.96623 3.15613 3.23370 3.41042 3.91744 4.12300 4.16312 4.19205 4.23439 4.30581 4.43422 4.52861 4.56530 4.66168 4.68350 4.93236 4.96143 4.99611 5.00438 5.09102 5.17100 5.19913 5.34824 5.46914 5.54925 5.59316 5.72028 5.85351 5.99301 6.23408 6.87379 6.95583 6.96612 7.39746 7.52664 8.94054 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.040855 B = 0.002590 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.182633 B =10807.416976 C =11219.439004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.057 0.943 4 C -0.086 4.086 5 H 0.158 0.842 6 C 0.497 3.503 7 O -0.552 6.552 8 O -0.501 6.501 9 C -0.105 4.105 10 C 0.088 3.912 11 N -0.635 5.635 12 C 0.714 3.286 13 O -0.636 6.636 14 N -0.726 5.726 15 C 0.150 3.850 16 C -0.098 4.098 17 C 0.023 3.977 18 C -0.539 4.539 19 H 0.068 0.932 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.258 1.258 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.430 0.570 30 H 0.076 0.924 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.411 0.589 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.070 0.930 39 H -0.009 1.009 40 H -0.008 1.008 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -6.047 -30.010 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.075 0.925 4 C -0.105 4.105 5 H 0.175 0.825 6 C 0.341 3.659 7 O -0.442 6.442 8 O -0.314 6.314 9 C -0.143 4.143 10 C -0.034 4.034 11 N -0.373 5.373 12 C 0.416 3.584 13 O -0.517 6.517 14 N -0.382 5.382 15 C 0.025 3.975 16 C -0.136 4.136 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.793 3.207 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.182 1.182 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.292 0.708 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.248 0.752 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.009 0.991 40 H 0.010 0.990 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.018 -5.217 -29.257 29.787 hybrid contribution 0.403 0.430 0.653 0.880 sum 2.421 -4.787 -28.604 29.102 Atomic orbital electron populations 1.22087 0.94092 1.03037 1.02242 1.21183 0.95014 0.95573 0.82782 0.92470 1.22058 1.02101 0.96332 0.90029 0.82472 1.23096 0.72802 0.87681 0.82357 1.90776 1.53438 1.20317 1.79685 1.84457 1.71914 1.46315 1.28748 1.22812 0.94832 1.02105 0.94518 1.22724 0.96157 0.88343 0.96151 1.47591 1.56387 1.30747 1.02563 1.15632 0.79960 0.82484 0.80334 1.90891 1.46906 1.30423 1.83497 1.45014 1.57385 1.31132 1.04691 1.21090 0.99517 0.98149 0.78721 1.21576 1.00162 0.97916 0.93963 1.18945 0.95313 0.95516 0.91688 1.21679 1.32698 1.11497 0.91836 0.91345 1.26048 0.96125 0.97614 1.00475 1.70117 1.42936 1.31913 1.12718 0.85397 0.78245 0.79364 0.77721 1.19864 1.21154 1.18239 0.94094 0.90636 0.90494 0.70795 0.90519 0.84484 0.89011 0.88244 0.75210 0.93498 0.93795 0.91304 0.91126 0.99102 0.98963 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.11 71.98 0.66 -2.72 16 2 C 0.16 3.39 2.87 45.35 0.13 3.52 16 3 H 0.06 1.64 6.89 -2.39 -0.02 1.63 16 4 C -0.09 -0.97 2.97 -10.35 -0.03 -1.00 16 5 H 0.16 0.86 7.84 -2.39 -0.02 0.84 16 6 C 0.50 6.99 7.64 71.24 0.54 7.53 16 7 O -0.55 -12.86 16.24 21.97 0.36 -12.50 16 8 O -0.50 -3.59 13.41 -51.35 -0.69 -4.28 16 9 C -0.10 -0.76 6.51 31.99 0.21 -0.55 16 10 C 0.09 0.98 6.57 86.86 0.57 1.55 16 11 N -0.63 -14.28 3.06 -805.85 -2.47 -16.75 16 12 C 0.71 23.03 8.28 179.05 1.48 24.51 16 13 O -0.64 -27.05 15.39 -3.99 -0.06 -27.11 16 14 N -0.73 -21.18 5.52 -478.55 -2.64 -23.82 16 15 C 0.15 5.51 5.67 86.38 0.49 6.00 16 16 C -0.10 -3.79 5.27 30.60 0.16 -3.63 16 17 C 0.02 1.21 4.97 29.85 0.15 1.36 16 18 C -0.54 -30.02 9.11 25.60 0.23 -29.78 16 19 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 20 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 21 N -0.94 -57.60 13.29 21.45 0.28 -57.32 16 22 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 H 0.04 1.21 6.89 -2.39 -0.02 1.19 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.43 0.02 9.10 -74.06 -0.67 -0.65 16 30 H 0.08 0.70 8.04 -2.39 -0.02 0.68 16 31 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.09 0.87 7.30 -2.39 -0.02 0.86 16 33 H 0.10 0.70 8.14 -2.38 -0.02 0.69 16 34 H 0.41 8.87 6.95 -92.71 -0.64 8.22 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -82.51 342.67 1.59 -80.92 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.27 Total: 8.17 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.06 Total: 6.96 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -4.82 Total: -97.88 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.39 Total: -43.89 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -82.51 1.59 -80.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609832298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.939 kcal (2) G-P(sol) polarization free energy of solvation -82.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds