Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99867 * 2 1 4 4 H 1.48503 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46965 * 299.99279 * 3 2 1 6 6 H 1.48488 * 109.47561 * 59.99540 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99476 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47189 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.46893 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99792 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00284 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99965 * 180.02562 * 14 12 11 16 16 H 1.08998 * 110.66576 * 328.22106 * 15 14 12 17 17 C 1.55002 * 110.75808 * 91.59184 * 15 14 12 18 18 C 1.54362 * 104.16120 * 156.03965 * 17 15 14 19 19 C 1.53529 * 106.51902 * 336.50332 * 18 17 15 20 20 C 1.53937 * 106.94583 * 0.05924 * 19 18 17 21 21 O 1.43355 * 110.18318 * 240.61269 * 19 18 17 22 22 C 1.44885 * 104.69486 * 214.55633 * 21 19 18 23 23 C 1.54946 * 101.77767 * 35.72415 * 22 21 19 24 24 O 1.42983 * 110.37742 * 119.84236 * 19 18 17 25 25 H 0.96997 * 120.00071 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46958 * 59.99783 * 9 7 2 27 27 H 1.09005 * 109.47170 * 300.00154 * 9 7 2 28 28 H 1.08995 * 109.47397 * 59.99991 * 10 9 7 29 29 H 1.08996 * 109.47348 * 300.00023 * 10 9 7 30 30 H 0.96994 * 120.00274 * 359.97438 * 11 10 9 31 31 H 0.97002 * 119.99903 * 0.02562 * 14 12 11 32 32 H 1.08999 * 110.47311 * 37.38925 * 17 15 14 33 33 H 1.08995 * 110.53507 * 274.72623 * 17 15 14 34 34 H 1.09002 * 110.05797 * 217.22340 * 18 17 15 35 35 H 1.09000 * 110.05236 * 95.78505 * 18 17 15 36 36 H 1.09001 * 110.50368 * 142.06359 * 20 19 18 37 37 H 1.09003 * 110.49777 * 264.74793 * 20 19 18 38 38 H 1.08993 * 110.96522 * 277.59820 * 22 21 19 39 39 H 1.09007 * 110.96445 * 153.84351 * 22 21 19 40 40 H 1.08996 * 110.68826 * 206.26492 * 23 22 21 41 41 H 1.09000 * 110.69331 * 83.06771 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0016 13 8 3.4025 -6.0981 0.0030 14 7 1.5127 -7.2652 0.0016 15 6 2.2452 -8.5340 0.0026 16 1 3.1888 -8.4338 -0.5339 17 6 2.4840 -9.0293 1.4518 18 6 2.6675 -10.5548 1.3041 19 6 1.9677 -10.9542 -0.0028 20 6 1.3828 -9.6663 -0.6102 21 8 0.9151 -11.8896 0.2656 22 6 0.9079 -12.7740 -0.8819 23 6 2.4173 -12.8669 -1.2191 24 8 2.9036 -11.5441 -0.9086 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8712 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 0.5428 -4.9308 0.0005 31 1 0.5427 -7.2652 0.0009 32 1 1.6195 -8.8079 2.0777 33 1 3.3834 -8.5754 1.8677 34 1 2.2072 -11.0701 2.1471 35 1 3.7282 -10.8002 1.2503 36 1 1.4819 -9.6769 -1.6957 37 1 0.3381 -9.5487 -0.3224 38 1 0.3497 -12.3353 -1.7089 39 1 0.5063 -13.7524 -0.6177 40 1 2.5627 -13.0926 -2.2755 41 1 2.9065 -13.6137 -0.5938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679546361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = -131.851653 kcal Electronic energy + Delta-G solvation = -22252.130592 eV Core-core repulsion = 18745.601292 eV Total energy + Delta-G solvation = -3506.529299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17160 -39.56628 -37.03027 -35.40126 -34.72698 -33.35896 -32.67971 -30.05322 -29.51625 -28.60108 -26.19285 -24.51886 -23.67834 -21.52609 -20.87923 -20.77394 -20.36541 -18.07824 -17.48512 -17.07890 -16.45028 -16.14537 -15.81815 -15.30110 -14.93270 -14.57015 -14.45797 -14.16160 -13.75199 -13.54007 -13.26052 -13.15685 -13.09602 -12.72516 -12.29145 -12.15752 -11.73817 -11.71684 -11.55135 -11.15317 -11.03142 -10.93267 -10.59593 -10.50196 -10.29493 -10.02617 -9.86227 -9.52744 -9.22050 -8.95728 -8.46745 -8.21787 -6.07416 -4.09738 2.99113 3.06484 3.30089 3.37662 3.43304 3.56895 3.60353 4.12588 4.22189 4.29249 4.42420 4.50907 4.66653 4.74561 4.85796 5.04150 5.05941 5.13017 5.15823 5.27701 5.29841 5.40876 5.44441 5.60554 5.65812 5.79578 6.01611 6.07094 6.34541 6.43344 6.67584 6.79297 6.81263 7.04033 7.28363 7.59948 7.66087 7.92275 8.28615 8.47679 8.95656 9.04286 9.54970 11.04366 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.052586 B = 0.002461 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.329401 B =11375.822486 C =11524.592724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.140 3.860 11 N -0.739 5.739 12 C 0.699 3.301 13 O -0.597 6.597 14 N -0.746 5.746 15 C 0.166 3.834 16 H 0.102 0.898 17 C -0.135 4.135 18 C -0.126 4.126 19 C 0.257 3.743 20 C -0.151 4.151 21 O -0.367 6.367 22 C 0.013 3.987 23 C 0.018 3.982 24 O -0.371 6.371 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -27.556 -0.983 27.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.475 6.475 14 N -0.401 5.401 15 C 0.060 3.940 16 H 0.120 0.880 17 C -0.174 4.174 18 C -0.164 4.164 19 C 0.179 3.821 20 C -0.190 4.190 21 O -0.288 6.288 22 C -0.063 4.063 23 C -0.058 4.058 24 O -0.292 6.292 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.226 0.774 31 H 0.228 0.772 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.369 -27.283 -0.873 27.299 hybrid contribution -0.702 0.770 -0.139 1.051 sum -0.332 -26.512 -1.012 26.534 Atomic orbital electron populations 1.69965 1.06092 1.26720 1.50625 1.25002 0.94897 0.99425 0.95056 0.86454 0.80196 0.83334 0.77577 1.19559 1.20961 1.20964 1.21100 0.93320 0.90356 1.51007 0.92156 1.19329 0.94271 0.91118 0.97792 1.21583 0.95619 0.80414 1.00642 1.45539 1.09831 1.05332 1.78518 1.16074 0.85683 0.80489 0.77875 1.90887 1.11739 1.86606 1.58311 1.45100 1.09228 1.04400 1.81398 1.21595 0.95780 0.81063 0.95556 0.88011 1.22810 1.03181 0.93646 0.97724 1.22429 1.01592 0.96802 0.95586 1.23693 0.80444 0.88184 0.89748 1.23195 1.00565 0.93508 1.01719 1.89273 1.53886 1.44385 1.41235 1.24414 0.96621 0.95768 0.89504 1.24233 0.93343 0.85739 1.02496 1.88953 1.47288 1.28110 1.64834 0.92939 0.95981 0.95980 0.92787 0.92805 0.77417 0.77245 0.90791 0.90199 0.89643 0.89411 0.89693 0.89026 0.90493 0.87392 0.88209 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 9 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 10 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 11 N -0.74 -13.31 5.56 -65.23 -0.36 -13.67 16 12 C 0.70 12.49 8.57 -86.91 -0.74 11.75 16 13 O -0.60 -13.07 15.99 5.29 0.08 -12.99 16 14 N -0.75 -9.74 5.18 -56.63 -0.29 -10.04 16 15 C 0.17 2.02 3.27 -65.83 -0.22 1.80 16 16 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 17 C -0.13 -1.49 6.53 -24.96 -0.16 -1.65 16 18 C -0.13 -1.23 6.43 -25.74 -0.17 -1.39 16 19 C 0.26 2.53 1.37 -25.97 -0.04 2.50 16 20 C -0.15 -1.48 5.91 -25.20 -0.15 -1.62 16 21 O -0.37 -3.47 10.89 -59.03 -0.64 -4.11 16 22 C 0.01 0.08 7.94 38.18 0.30 0.38 16 23 C 0.02 0.12 8.08 38.18 0.31 0.43 16 24 O -0.37 -3.78 10.77 -59.03 -0.64 -4.42 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.39 6.06 8.49 -40.82 -0.35 5.71 16 31 H 0.39 4.02 8.58 -40.82 -0.35 3.67 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.77 7.96 -51.93 -0.41 0.35 16 35 H 0.09 0.85 7.96 -51.93 -0.41 0.43 16 36 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.09 0.80 7.95 -51.93 -0.41 0.39 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -33.78 339.93 -8.96 -42.75 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.52 Total: 4.33 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -1.44 Total: 2.07 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.08 Total: -49.30 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.19 Total: -21.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.78 -8.96 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679546361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.103 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds