Wall clock time and date at job start Tue Mar 31 2020 05:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99867 * 2 1 4 4 H 1.48503 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46965 * 299.99279 * 3 2 1 6 6 H 1.48488 * 109.47561 * 59.99540 * 3 2 1 7 7 C 1.37878 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99476 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00354 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47189 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.46893 * 180.02562 * 10 9 7 12 12 C 1.34781 * 119.99792 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00284 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99965 * 180.02562 * 14 12 11 16 16 H 1.08998 * 110.66576 * 328.22106 * 15 14 12 17 17 C 1.55002 * 110.75808 * 91.59184 * 15 14 12 18 18 C 1.54362 * 104.16120 * 156.03965 * 17 15 14 19 19 C 1.53529 * 106.51902 * 336.50332 * 18 17 15 20 20 C 1.53937 * 106.94583 * 0.05924 * 19 18 17 21 21 O 1.43355 * 110.18318 * 240.61269 * 19 18 17 22 22 C 1.44885 * 104.69486 * 214.55633 * 21 19 18 23 23 C 1.54946 * 101.77767 * 35.72415 * 22 21 19 24 24 O 1.42983 * 110.37742 * 119.84236 * 19 18 17 25 25 H 0.96997 * 120.00071 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.46958 * 59.99783 * 9 7 2 27 27 H 1.09005 * 109.47170 * 300.00154 * 9 7 2 28 28 H 1.08995 * 109.47397 * 59.99991 * 10 9 7 29 29 H 1.08996 * 109.47348 * 300.00023 * 10 9 7 30 30 H 0.96994 * 120.00274 * 359.97438 * 11 10 9 31 31 H 0.97002 * 119.99903 * 0.02562 * 14 12 11 32 32 H 1.08999 * 110.47311 * 37.38925 * 17 15 14 33 33 H 1.08995 * 110.53507 * 274.72623 * 17 15 14 34 34 H 1.09002 * 110.05797 * 217.22340 * 18 17 15 35 35 H 1.09000 * 110.05236 * 95.78505 * 18 17 15 36 36 H 1.09001 * 110.50368 * 142.06359 * 20 19 18 37 37 H 1.09003 * 110.49777 * 264.74793 * 20 19 18 38 38 H 1.08993 * 110.96522 * 277.59820 * 22 21 19 39 39 H 1.09007 * 110.96445 * 153.84351 * 22 21 19 40 40 H 1.08996 * 110.68826 * 206.26492 * 23 22 21 41 41 H 1.09000 * 110.69331 * 83.06771 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0980 0.0016 13 8 3.4025 -6.0981 0.0030 14 7 1.5127 -7.2652 0.0016 15 6 2.2452 -8.5340 0.0026 16 1 3.1888 -8.4338 -0.5339 17 6 2.4840 -9.0293 1.4518 18 6 2.6675 -10.5548 1.3041 19 6 1.9677 -10.9542 -0.0028 20 6 1.3828 -9.6663 -0.6102 21 8 0.9151 -11.8896 0.2656 22 6 0.9079 -12.7740 -0.8819 23 6 2.4173 -12.8669 -1.2191 24 8 2.9036 -11.5441 -0.9086 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8712 -3.6039 0.8922 29 1 2.8726 -3.6047 -0.8877 30 1 0.5428 -4.9308 0.0005 31 1 0.5427 -7.2652 0.0009 32 1 1.6195 -8.8079 2.0777 33 1 3.3834 -8.5754 1.8677 34 1 2.2072 -11.0701 2.1471 35 1 3.7282 -10.8002 1.2503 36 1 1.4819 -9.6769 -1.6957 37 1 0.3381 -9.5487 -0.3224 38 1 0.3497 -12.3353 -1.7089 39 1 0.5063 -13.7524 -0.6177 40 1 2.5627 -13.0926 -2.2755 41 1 2.9065 -13.6137 -0.5938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679546361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:15 Heat of formation + Delta-G solvation = -156.807867 kcal Electronic energy + Delta-G solvation = -22253.212774 eV Core-core repulsion = 18745.601292 eV Total energy + Delta-G solvation = -3507.611482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89026 -40.92594 -38.05405 -36.47967 -36.06198 -34.88912 -34.31958 -31.48316 -30.47604 -29.57244 -27.27415 -26.29226 -24.18824 -23.12902 -22.27570 -21.81133 -21.42129 -19.48921 -18.44619 -18.17277 -17.77559 -17.21024 -16.70006 -16.55438 -16.44344 -16.14747 -15.44015 -15.25862 -15.08336 -14.96296 -14.31238 -14.23064 -14.03139 -13.86257 -13.40565 -13.19475 -13.08978 -12.93549 -12.63103 -12.51577 -12.44910 -12.26189 -12.21978 -11.79971 -11.65836 -11.48754 -11.20575 -11.08279 -10.69528 -10.60236 -10.29343 -9.71755 -8.23548 -6.33510 1.41710 1.42534 1.55705 1.72719 2.15865 2.41871 2.47178 2.88877 3.11349 3.28655 3.38651 3.58726 3.71837 3.99588 4.06872 4.16198 4.28630 4.34209 4.37196 4.49546 4.52907 4.54909 4.59532 4.72527 4.82130 4.84748 4.88129 4.94275 5.01372 5.10695 5.15899 5.32888 5.52371 5.56113 5.60726 5.80118 6.05930 6.15567 6.18333 6.79921 7.14285 7.35811 7.61014 8.88650 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.052586 B = 0.002461 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.329401 B =11375.822486 C =11524.592724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.733 5.733 12 C 0.699 3.301 13 O -0.639 6.639 14 N -0.724 5.724 15 C 0.162 3.838 16 H 0.075 0.925 17 C -0.130 4.130 18 C -0.122 4.122 19 C 0.257 3.743 20 C -0.140 4.140 21 O -0.381 6.381 22 C 0.010 3.990 23 C 0.011 3.989 24 O -0.395 6.395 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.009 0.991 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.407 0.593 31 H 0.412 0.588 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -28.657 -1.141 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.398 3.602 13 O -0.521 6.521 14 N -0.380 5.380 15 C 0.056 3.944 16 H 0.093 0.907 17 C -0.169 4.169 18 C -0.160 4.160 19 C 0.179 3.821 20 C -0.179 4.179 21 O -0.301 6.301 22 C -0.066 4.066 23 C -0.065 4.065 24 O -0.316 6.316 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.243 0.757 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.319 -28.439 -1.035 28.460 hybrid contribution -0.529 1.001 -0.115 1.138 sum -0.848 -27.438 -1.150 27.476 Atomic orbital electron populations 1.70061 1.07511 1.27925 1.51146 1.25871 0.95815 1.03089 0.94456 0.85388 0.78952 0.78756 0.77899 1.19020 1.20190 1.20202 1.21497 0.93598 0.91922 1.51334 0.92348 1.19128 0.94222 0.91619 0.96387 1.21067 0.94624 0.81131 0.99557 1.45212 1.10395 1.04374 1.78747 1.16171 0.85174 0.81274 0.77546 1.90862 1.13779 1.87276 1.60152 1.44899 1.10090 1.03266 1.79719 1.21653 0.95261 0.81090 0.96423 0.90716 1.22736 1.02683 0.94648 0.96842 1.22383 1.01669 0.95601 0.96326 1.23585 0.80655 0.88373 0.89466 1.23121 1.00781 0.92338 1.01614 1.89252 1.53518 1.44725 1.42635 1.24668 0.96523 0.96466 0.88930 1.24500 0.93662 0.84369 1.03924 1.88935 1.47880 1.29908 1.64905 0.92545 0.97251 0.97248 0.93875 0.93923 0.75726 0.75149 0.89901 0.91986 0.88633 0.89736 0.89552 0.87472 0.89604 0.84959 0.86348 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.55 -30.81 9.11 25.60 0.23 -30.57 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.22 5.09 29.85 0.15 1.38 16 10 C 0.16 7.13 5.61 86.38 0.48 7.61 16 11 N -0.73 -26.27 5.56 -478.54 -2.66 -28.93 16 12 C 0.70 24.89 8.57 179.05 1.53 26.43 16 13 O -0.64 -28.50 15.99 -3.99 -0.06 -28.56 16 14 N -0.72 -18.26 5.18 -451.33 -2.34 -20.60 16 15 C 0.16 3.84 3.27 46.35 0.15 3.99 16 16 H 0.07 2.23 7.55 -2.39 -0.02 2.21 16 17 C -0.13 -2.82 6.53 31.74 0.21 -2.61 16 18 C -0.12 -2.26 6.43 31.23 0.20 -2.06 16 19 C 0.26 4.69 1.37 31.09 0.04 4.73 16 20 C -0.14 -2.51 5.91 31.58 0.19 -2.33 16 21 O -0.38 -6.33 10.89 -126.22 -1.38 -7.70 16 22 C 0.01 0.09 7.94 72.65 0.58 0.67 16 23 C 0.01 0.12 8.08 72.65 0.59 0.71 16 24 O -0.39 -7.58 10.77 -126.22 -1.36 -8.94 16 25 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.41 12.24 8.49 -92.71 -0.79 11.45 16 31 H 0.41 7.61 8.58 -92.71 -0.80 6.81 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.57 7.96 -2.39 -0.02 1.55 16 35 H 0.08 1.61 7.96 -2.39 -0.02 1.59 16 36 H 0.09 1.54 8.06 -2.39 -0.02 1.52 16 37 H 0.11 1.59 7.95 -2.39 -0.02 1.57 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -72.52 339.93 -1.21 -73.74 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.54 Total: 20.47 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 4.82 Total: 8.77 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.72 Total: -103.80 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -2.80 Total: -45.20 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.52 -1.21 -73.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679546361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.071 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds