Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48500 * 109.47213 * 269.99558 * 3 2 1 5 5 H 1.48502 * 109.47154 * 29.99808 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99899 * 3 2 1 7 7 C 1.37869 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00288 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99946 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46878 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99876 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 H 1.09000 * 110.01486 * 34.57733 * 15 14 12 17 17 C 1.53938 * 110.02789 * 273.20087 * 15 14 12 18 18 C 1.54408 * 106.63030 * 240.71529 * 17 15 14 19 19 C 1.54101 * 104.14853 * 22.85886 * 18 17 15 20 20 C 1.54235 * 103.66394 * 322.94882 * 19 18 17 21 21 O 1.42887 * 110.70326 * 204.24503 * 19 18 17 22 22 C 1.44996 * 104.55098 * 213.61275 * 21 19 18 23 23 C 1.54982 * 101.85136 * 35.22209 * 22 21 19 24 24 O 1.42511 * 110.91227 * 82.02453 * 19 18 17 25 25 H 0.97004 * 120.00078 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46799 * 60.00524 * 9 7 2 27 27 H 1.08994 * 109.47464 * 300.00010 * 9 7 2 28 28 H 1.08998 * 109.46943 * 60.00655 * 10 9 7 29 29 H 1.08994 * 109.47547 * 299.99948 * 10 9 7 30 30 H 0.97000 * 119.99601 * 359.97438 * 11 10 9 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 32 32 H 1.08994 * 110.02402 * 0.02562 * 17 15 14 33 33 H 1.09000 * 110.02363 * 121.37453 * 17 15 14 34 34 H 1.08996 * 110.49532 * 141.52662 * 18 17 15 35 35 H 1.09004 * 110.49037 * 264.06011 * 18 17 15 36 36 H 1.08999 * 110.51407 * 278.41318 * 20 19 18 37 37 H 1.08997 * 110.53889 * 155.70345 * 20 19 18 38 38 H 1.09003 * 110.95238 * 277.08724 * 22 21 19 39 39 H 1.09000 * 110.95119 * 153.36332 * 22 21 19 40 40 H 1.08999 * 110.68757 * 206.52168 * 23 22 21 41 41 H 1.08997 * 110.83797 * 83.40134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 7 5.4866 -2.6364 0.0035 12 6 6.1605 -3.8036 0.0041 13 8 5.5526 -4.8565 0.0042 14 7 7.5083 -3.8035 0.0047 15 6 8.2408 -5.0722 0.0115 16 1 7.6973 -5.8199 -0.5661 17 6 8.4339 -5.5617 1.4582 18 6 9.9571 -5.6408 1.6983 19 6 10.5534 -4.6744 0.6566 20 6 9.6528 -4.8707 -0.5800 21 8 11.9055 -5.0262 0.3569 22 6 12.5632 -3.7597 0.1005 23 6 11.8470 -2.8203 1.1037 24 8 10.4948 -3.3279 1.1197 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8912 27 1 3.8753 -0.6803 -0.8888 28 1 3.6587 -3.1508 -0.8875 29 1 3.6580 -3.1497 0.8924 30 1 5.9716 -1.7963 0.0030 31 1 7.9933 -2.9634 0.0050 32 1 7.9821 -4.8554 2.1546 33 1 7.9840 -6.5468 1.5820 34 1 10.2018 -5.3117 2.7082 35 1 10.3176 -6.6557 1.5307 36 1 9.9610 -5.7530 -1.1408 37 1 9.6775 -3.9855 -1.2155 38 1 12.3953 -3.4342 -0.9262 39 1 13.6293 -3.8230 0.3185 40 1 11.8675 -1.7900 0.7485 41 1 12.2978 -2.8940 2.0934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679546362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = -125.111276 kcal Electronic energy + Delta-G solvation = -22664.566415 eV Core-core repulsion = 19158.329400 eV Total energy + Delta-G solvation = -3506.237015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26010 -39.60225 -37.10189 -35.44809 -34.81564 -33.26199 -32.60719 -30.23723 -29.76758 -28.73608 -26.42585 -24.59429 -23.73846 -21.26023 -21.01380 -20.66390 -20.23074 -18.18498 -17.42010 -17.15152 -16.87462 -16.31060 -15.73547 -15.44398 -14.94209 -14.56109 -14.28699 -14.20414 -13.87911 -13.69157 -13.41915 -13.19587 -12.70607 -12.59303 -12.57229 -12.46410 -12.09844 -11.67122 -11.44216 -11.40733 -11.16974 -11.02160 -10.61296 -10.34567 -10.21096 -9.93906 -9.84549 -9.68930 -9.28663 -8.98459 -8.59668 -8.31446 -6.08089 -4.07797 2.97158 3.08856 3.27278 3.34797 3.36501 3.51391 3.58622 4.07102 4.19395 4.22801 4.40415 4.47198 4.63181 4.66082 4.84996 5.05332 5.07887 5.12922 5.18198 5.24953 5.30101 5.32078 5.38716 5.54674 5.64463 5.75020 5.98699 6.07229 6.16357 6.30237 6.62807 6.71803 6.77882 6.89069 7.12911 7.29459 7.38497 7.71206 8.38387 8.50511 8.96382 9.00765 9.52244 11.05049 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027960 B = 0.003127 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.196092 B = 8952.550285 C = 9651.148851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.149 3.851 11 N -0.743 5.743 12 C 0.699 3.301 13 O -0.596 6.596 14 N -0.744 5.744 15 C 0.168 3.832 16 H 0.095 0.905 17 C -0.131 4.131 18 C -0.124 4.124 19 C 0.250 3.750 20 C -0.151 4.151 21 O -0.366 6.366 22 C 0.014 3.986 23 C 0.018 3.982 24 O -0.364 6.364 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.396 0.604 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.049 -6.639 0.939 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.026 3.974 11 N -0.397 5.397 12 C 0.399 3.601 13 O -0.475 6.475 14 N -0.400 5.400 15 C 0.061 3.939 16 H 0.113 0.887 17 C -0.170 4.170 18 C -0.162 4.162 19 C 0.172 3.828 20 C -0.189 4.189 21 O -0.286 6.286 22 C -0.063 4.063 23 C -0.058 4.058 24 O -0.285 6.285 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.224 0.776 31 H 0.230 0.770 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 28.161 -7.614 0.992 29.189 hybrid contribution 0.958 1.925 -0.049 2.151 sum 29.120 -5.690 0.943 29.685 Atomic orbital electron populations 1.69909 1.06283 1.26999 1.50605 1.25000 0.94762 0.99132 0.94436 0.86745 0.80269 0.83555 0.78452 1.20269 1.21311 1.19093 1.20933 0.88689 0.94902 1.51422 0.90581 1.19795 0.97881 0.91523 0.96755 1.21354 0.74883 0.99734 1.01426 1.45522 1.08862 1.06294 1.78987 1.16054 0.81368 0.84791 0.77887 1.90891 1.67787 1.30533 1.58250 1.45269 1.04801 1.08836 1.81102 1.21180 0.90532 0.86227 0.95914 0.88676 1.22614 0.94394 1.02718 0.97272 1.22555 0.95839 0.99194 0.98647 1.23817 0.82974 0.82653 0.93320 1.23190 0.94580 1.04048 0.97108 1.89190 1.21720 1.27857 1.89824 1.24434 0.99190 0.83080 0.99547 1.24280 0.82251 0.99351 0.99948 1.88869 1.26521 1.26062 1.87009 0.92589 0.96050 0.96500 0.92230 0.92205 0.77633 0.77030 0.90460 0.90451 0.90333 0.89504 0.88196 0.89819 0.90464 0.87413 0.88106 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.15 3.16 5.61 -4.04 -0.02 3.14 16 11 N -0.74 -12.90 5.56 -65.22 -0.36 -13.26 16 12 C 0.70 12.20 8.56 -86.92 -0.74 11.46 16 13 O -0.60 -12.77 16.01 5.29 0.08 -12.68 16 14 N -0.74 -9.66 4.94 -57.48 -0.28 -9.94 16 15 C 0.17 1.93 3.24 -66.71 -0.22 1.72 16 16 H 0.10 1.23 7.59 -51.93 -0.39 0.84 16 17 C -0.13 -1.44 6.60 -25.50 -0.17 -1.61 16 18 C -0.12 -1.15 6.27 -25.42 -0.16 -1.31 16 19 C 0.25 2.30 1.21 -25.51 -0.03 2.27 16 20 C -0.15 -1.36 5.89 -25.35 -0.15 -1.51 16 21 O -0.37 -3.27 11.11 -59.02 -0.66 -3.92 16 22 C 0.01 0.08 7.96 38.20 0.30 0.38 16 23 C 0.02 0.11 8.08 38.20 0.31 0.42 16 24 O -0.36 -3.44 10.99 -59.02 -0.65 -4.08 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.39 5.70 8.49 -40.82 -0.35 5.35 16 31 H 0.40 4.36 8.58 -40.82 -0.35 4.01 16 32 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.72 7.97 -51.93 -0.41 0.31 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -34.29 336.53 -8.61 -42.90 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.50 Total: 5.15 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.42 Total: 1.06 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.13 Total: -50.09 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -1.22 Total: -20.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.29 -8.61 -42.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679546362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.211 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds