Wall clock time and date at job start Tue Mar 31 2020 05:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48500 * 109.47213 * 269.99558 * 3 2 1 5 5 H 1.48502 * 109.47154 * 29.99808 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99899 * 3 2 1 7 7 C 1.37869 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00288 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99946 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46878 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46968 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99876 * 180.02562 * 11 10 9 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 H 1.09000 * 110.01486 * 34.57733 * 15 14 12 17 17 C 1.53938 * 110.02789 * 273.20087 * 15 14 12 18 18 C 1.54408 * 106.63030 * 240.71529 * 17 15 14 19 19 C 1.54101 * 104.14853 * 22.85886 * 18 17 15 20 20 C 1.54235 * 103.66394 * 322.94882 * 19 18 17 21 21 O 1.42887 * 110.70326 * 204.24503 * 19 18 17 22 22 C 1.44996 * 104.55098 * 213.61275 * 21 19 18 23 23 C 1.54982 * 101.85136 * 35.22209 * 22 21 19 24 24 O 1.42511 * 110.91227 * 82.02453 * 19 18 17 25 25 H 0.97004 * 120.00078 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46799 * 60.00524 * 9 7 2 27 27 H 1.08994 * 109.47464 * 300.00010 * 9 7 2 28 28 H 1.08998 * 109.46943 * 60.00655 * 10 9 7 29 29 H 1.08994 * 109.47547 * 299.99948 * 10 9 7 30 30 H 0.97000 * 119.99601 * 359.97438 * 11 10 9 31 31 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 32 32 H 1.08994 * 110.02402 * 0.02562 * 17 15 14 33 33 H 1.09000 * 110.02363 * 121.37453 * 17 15 14 34 34 H 1.08996 * 110.49532 * 141.52662 * 18 17 15 35 35 H 1.09004 * 110.49037 * 264.06011 * 18 17 15 36 36 H 1.08999 * 110.51407 * 278.41318 * 20 19 18 37 37 H 1.08997 * 110.53889 * 155.70345 * 20 19 18 38 38 H 1.09003 * 110.95238 * 277.08724 * 22 21 19 39 39 H 1.09000 * 110.95119 * 153.36332 * 22 21 19 40 40 H 1.08999 * 110.68757 * 206.52168 * 23 22 21 41 41 H 1.08997 * 110.83797 * 83.40134 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 7 5.4866 -2.6364 0.0035 12 6 6.1605 -3.8036 0.0041 13 8 5.5526 -4.8565 0.0042 14 7 7.5083 -3.8035 0.0047 15 6 8.2408 -5.0722 0.0115 16 1 7.6973 -5.8199 -0.5661 17 6 8.4339 -5.5617 1.4582 18 6 9.9571 -5.6408 1.6983 19 6 10.5534 -4.6744 0.6566 20 6 9.6528 -4.8707 -0.5800 21 8 11.9055 -5.0262 0.3569 22 6 12.5632 -3.7597 0.1005 23 6 11.8470 -2.8203 1.1037 24 8 10.4948 -3.3279 1.1197 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6799 0.8912 27 1 3.8753 -0.6803 -0.8888 28 1 3.6587 -3.1508 -0.8875 29 1 3.6580 -3.1497 0.8924 30 1 5.9716 -1.7963 0.0030 31 1 7.9933 -2.9634 0.0050 32 1 7.9821 -4.8554 2.1546 33 1 7.9840 -6.5468 1.5820 34 1 10.2018 -5.3117 2.7082 35 1 10.3176 -6.6557 1.5307 36 1 9.9610 -5.7530 -1.1408 37 1 9.6775 -3.9855 -1.2155 38 1 12.3953 -3.4342 -0.9262 39 1 13.6293 -3.8230 0.3185 40 1 11.8675 -1.7900 0.7485 41 1 12.2978 -2.8940 2.0934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679546362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:18 Heat of formation + Delta-G solvation = -151.528836 kcal Electronic energy + Delta-G solvation = -22665.711966 eV Core-core repulsion = 19158.329400 eV Total energy + Delta-G solvation = -3507.382566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94297 -40.89335 -38.08036 -36.50478 -36.05047 -34.83957 -34.20825 -31.87071 -30.49345 -29.61110 -27.42407 -26.32849 -24.20075 -22.82248 -22.25737 -21.70526 -21.30438 -19.50394 -18.90797 -18.09060 -17.77664 -17.45353 -16.61849 -16.38382 -16.29400 -16.00204 -15.69345 -15.30323 -15.05174 -14.76918 -14.73783 -14.56903 -13.84485 -13.42626 -13.33870 -13.23287 -13.18722 -13.16174 -12.92010 -12.29032 -12.21186 -12.14827 -12.11667 -11.88588 -11.75223 -11.52111 -11.24342 -11.09315 -10.77907 -10.51641 -10.31744 -9.72364 -8.29098 -6.36345 1.39641 1.42608 1.53968 1.76292 2.18441 2.37884 2.48745 2.89882 3.05895 3.38778 3.41127 3.44532 3.72890 4.07223 4.10840 4.18952 4.29258 4.36075 4.39432 4.46567 4.48595 4.52026 4.66685 4.67953 4.77180 4.82707 4.90244 4.97009 4.98297 5.10869 5.18359 5.20287 5.42745 5.46288 5.62857 5.68895 6.06497 6.18945 6.24514 6.71000 7.16568 7.28136 7.63434 8.87831 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027960 B = 0.003127 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.196092 B = 8952.550285 C = 9651.148851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.029 0.971 9 C -0.011 4.011 10 C 0.165 3.835 11 N -0.733 5.733 12 C 0.698 3.302 13 O -0.639 6.639 14 N -0.722 5.722 15 C 0.162 3.838 16 H 0.079 0.921 17 C -0.128 4.128 18 C -0.120 4.120 19 C 0.252 3.748 20 C -0.140 4.140 21 O -0.380 6.380 22 C 0.011 3.989 23 C 0.012 3.988 24 O -0.383 6.383 25 H 0.268 0.732 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.409 0.591 31 H 0.409 0.591 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.661 -4.867 0.692 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.577 4.577 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.041 3.959 11 N -0.388 5.388 12 C 0.397 3.603 13 O -0.521 6.521 14 N -0.379 5.379 15 C 0.057 3.943 16 H 0.097 0.903 17 C -0.167 4.167 18 C -0.158 4.158 19 C 0.174 3.826 20 C -0.179 4.179 21 O -0.301 6.301 22 C -0.065 4.065 23 C -0.064 4.064 24 O -0.304 6.304 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.245 0.755 31 H 0.246 0.754 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 31.858 -5.830 0.745 32.396 hybrid contribution -0.167 1.284 0.038 1.295 sum 31.691 -4.546 0.783 32.025 Atomic orbital electron populations 1.70081 1.08591 1.28434 1.52040 1.26088 0.95700 1.03893 0.93667 0.85518 0.79613 0.77265 0.79343 1.18913 1.21227 1.16064 1.21259 0.91581 0.93411 1.51500 0.95302 1.19637 0.94356 0.92860 0.98017 1.20862 0.77197 0.98209 0.99674 1.45138 1.07260 1.07337 1.79086 1.16185 0.82560 0.83934 0.77583 1.90868 1.69046 1.32076 1.60137 1.45112 1.03106 1.10232 1.79425 1.21325 0.91621 0.85063 0.96338 0.90324 1.22531 0.95862 1.01955 0.96391 1.22515 0.94241 1.00063 0.98965 1.23693 0.83346 0.82671 0.92895 1.23132 0.92474 1.04994 0.97274 1.89173 1.21488 1.29498 1.89916 1.24679 1.00129 0.81670 1.00030 1.24514 0.80919 1.00361 1.00589 1.88845 1.28444 1.26052 1.87105 0.92318 0.94577 0.94589 0.94066 0.94219 0.75532 0.75419 0.92282 0.90764 0.90297 0.88534 0.87029 0.88974 0.89441 0.85258 0.86203 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.44 0.30 -59.62 16 2 C 0.00 0.20 5.47 84.65 0.46 0.66 16 3 Si 0.96 42.68 27.47 68.60 1.88 44.56 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.24 -9.41 6.54 99.48 0.65 -8.76 16 7 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 10 C 0.17 7.04 5.61 86.38 0.48 7.52 16 11 N -0.73 -24.50 5.56 -478.53 -2.66 -27.16 16 12 C 0.70 23.96 8.56 179.05 1.53 25.49 16 13 O -0.64 -27.87 16.01 -3.98 -0.06 -27.93 16 14 N -0.72 -17.79 4.94 -454.02 -2.24 -20.04 16 15 C 0.16 3.59 3.24 45.79 0.15 3.74 16 16 H 0.08 2.03 7.59 -2.39 -0.02 2.02 16 17 C -0.13 -2.77 6.60 31.39 0.21 -2.56 16 18 C -0.12 -2.05 6.27 31.44 0.20 -1.86 16 19 C 0.25 4.09 1.21 31.39 0.04 4.13 16 20 C -0.14 -2.24 5.89 31.49 0.19 -2.06 16 21 O -0.38 -5.82 11.11 -126.23 -1.40 -7.22 16 22 C 0.01 0.09 7.96 72.66 0.58 0.67 16 23 C 0.01 0.11 8.08 72.66 0.59 0.70 16 24 O -0.38 -6.31 10.99 -126.23 -1.39 -7.69 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.04 1.55 7.20 -2.39 -0.02 1.53 16 27 H 0.04 1.51 7.57 -2.39 -0.02 1.50 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.41 10.75 8.49 -92.71 -0.79 9.96 16 31 H 0.41 8.03 8.58 -92.71 -0.79 7.23 16 32 H 0.06 1.49 7.92 -2.39 -0.02 1.47 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.33 7.97 -2.39 -0.02 1.31 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.27 336.53 -1.38 -77.64 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.60 Total: 22.43 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 4.79 Total: 5.02 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.61 Total: -106.82 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -2.85 Total: -42.84 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.88 Total: 44.56 kcal Total: -76.27 -1.38 -77.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679546362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.884 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds