Wall clock time and date at job start Tue Mar 31 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00165 * 2 1 4 4 H 1.48500 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47188 * 300.00132 * 3 2 1 6 6 H 1.48495 * 109.46987 * 60.00591 * 3 2 1 7 7 C 1.38806 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00587 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47589 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47486 * 295.00308 * 11 10 9 13 13 N 1.46503 * 109.46769 * 55.00287 * 11 10 9 14 14 C 1.34784 * 119.99794 * 204.99827 * 13 11 10 15 15 O 1.21281 * 119.99969 * 0.02562 * 14 13 11 16 16 C 1.50701 * 119.99831 * 179.97438 * 14 13 11 17 17 C 1.53006 * 112.90818 * 311.25235 * 16 14 13 18 18 F 1.39901 * 109.46987 * 48.75019 * 17 16 14 19 19 C 1.53779 * 113.61123 * 180.02562 * 16 14 13 20 20 C 1.53787 * 87.07963 * 220.01652 * 19 16 14 21 21 C 1.53779 * 113.61419 * 82.50381 * 16 14 13 22 22 C 1.52994 * 109.47317 * 174.99871 * 11 10 9 23 23 C 1.52996 * 117.50219 * 248.62258 * 22 11 10 24 24 C 1.52990 * 60.00328 * 252.50885 * 23 22 11 25 25 H 0.97007 * 119.99251 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99973 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46663 * 59.99825 * 10 9 7 28 28 H 1.08999 * 109.46771 * 300.00683 * 10 9 7 29 29 H 0.96996 * 120.00366 * 24.99512 * 13 11 10 30 30 H 1.08997 * 109.46800 * 168.75297 * 17 16 14 31 31 H 1.08999 * 109.46973 * 288.74953 * 17 16 14 32 32 H 1.08997 * 113.61646 * 105.47284 * 19 16 14 33 33 H 1.08998 * 113.69354 * 334.57592 * 19 16 14 34 34 H 1.09004 * 113.61202 * 139.98084 * 20 19 16 35 35 H 1.08994 * 113.61447 * 270.88515 * 20 19 16 36 36 H 1.09002 * 113.61557 * 25.43210 * 21 16 14 37 37 H 1.09004 * 113.61501 * 254.52631 * 21 16 14 38 38 H 1.09008 * 115.55202 * 34.33419 * 22 11 10 39 39 H 1.08997 * 117.50004 * 0.02562 * 23 22 11 40 40 H 1.09001 * 117.49882 * 145.02019 * 23 22 11 41 41 H 1.09003 * 117.50635 * 252.50854 * 24 23 22 42 42 H 1.09005 * 117.51694 * 107.48062 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.4986 -4.8139 0.9312 13 7 0.1430 -4.6757 -1.1312 14 6 -1.0815 -5.2366 -1.0786 15 8 -1.4212 -5.8600 -0.0953 16 6 -2.0288 -5.0881 -2.2412 17 6 -2.1537 -3.6425 -2.7267 18 9 -0.8772 -3.0948 -2.8938 19 6 -3.3830 -5.7840 -2.0251 20 6 -3.3068 -6.2167 -3.4988 21 6 -1.7783 -6.0986 -3.3729 22 6 1.8243 -6.1411 -0.1277 23 6 1.6625 -6.9272 -1.4303 24 6 1.0016 -7.4309 -0.1457 25 1 -0.4849 0.8402 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.6853 -3.7149 0.8878 28 1 2.6840 -3.7141 -0.8921 29 1 0.4145 -4.1768 -1.9174 30 1 -2.6846 -3.6235 -3.6785 31 1 -2.7062 -3.0584 -1.9908 32 1 -4.1999 -5.0939 -1.8143 33 1 -3.3404 -6.6166 -1.3228 34 1 -3.6533 -7.2354 -3.6733 35 1 -3.7448 -5.4955 -4.1888 36 1 -1.2954 -7.0171 -3.0393 37 1 -1.3002 -5.6623 -4.2500 38 1 2.7980 -6.1720 0.3615 39 1 1.0144 -6.5027 -2.1970 40 1 2.5297 -7.4753 -1.7984 41 1 1.4340 -8.3105 0.3313 42 1 -0.0816 -7.3381 -0.0668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754451739.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:12 Heat of formation + Delta-G solvation = -26.957037 kcal Electronic energy + Delta-G solvation = -24100.101483 eV Core-core repulsion = 20610.493545 eV Total energy + Delta-G solvation = -3489.607938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.49807 -40.46388 -38.51375 -36.55873 -34.82153 -33.15284 -31.11657 -29.05244 -27.85584 -25.80497 -24.68513 -23.88900 -22.19585 -21.47716 -21.24853 -19.58398 -18.85445 -17.37719 -16.97616 -16.15559 -15.99799 -15.57655 -15.44128 -15.22884 -14.63015 -14.24837 -14.05519 -13.82440 -13.33004 -13.19684 -12.81792 -12.55165 -12.29528 -12.03267 -11.73820 -11.62772 -11.37520 -11.21343 -11.10284 -10.89464 -10.84536 -10.79880 -10.45643 -10.40360 -10.18169 -10.01532 -9.73966 -9.52352 -9.30326 -8.85951 -8.52144 -6.88850 -5.72449 -3.01154 2.85995 3.45184 3.50842 3.52543 3.53173 4.10207 4.26063 4.33491 4.45820 4.60355 4.61731 4.85798 4.98806 5.12830 5.19069 5.22940 5.25082 5.36637 5.55553 5.60129 5.61457 5.65547 5.72057 5.76968 5.84877 5.87354 5.95576 5.99190 6.07191 6.09394 6.23024 6.29777 6.38058 6.55050 6.56553 6.76861 7.04372 7.73416 8.00082 8.45271 8.62049 9.57399 10.14144 10.50027 11.50008 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.005941 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.080856 B = 4711.784538 C = 5849.070441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.148 3.852 11 C 0.165 3.835 12 H 0.089 0.911 13 N -0.700 5.700 14 C 0.530 3.470 15 O -0.545 6.545 16 C -0.146 4.146 17 C 0.088 3.912 18 F -0.195 7.195 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.159 4.159 23 C -0.178 4.178 24 C -0.187 4.187 25 H 0.253 0.747 26 H 0.386 0.614 27 H 0.033 0.967 28 H 0.025 0.975 29 H 0.411 0.589 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 -14.408 -8.003 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.020 3.980 11 C 0.060 3.940 12 H 0.107 0.893 13 N -0.354 5.354 14 C 0.316 3.684 15 O -0.424 6.424 16 C -0.149 4.149 17 C 0.033 3.967 18 F -0.176 7.176 19 C -0.144 4.144 20 C -0.180 4.180 21 C -0.157 4.157 22 C -0.179 4.179 23 C -0.216 4.216 24 C -0.224 4.224 25 H 0.063 0.937 26 H 0.220 0.780 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.251 0.749 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.709 -14.680 -7.313 17.064 hybrid contribution 0.503 1.295 -0.306 1.423 sum -4.205 -13.385 -7.619 15.966 Atomic orbital electron populations 1.69687 1.05052 1.25311 1.57712 1.24719 0.95492 0.97570 1.03026 0.86134 0.78783 0.84262 0.77093 1.20619 1.21953 1.21970 1.19246 0.90998 0.84087 1.42631 0.91186 1.42315 1.06002 0.99614 1.89407 1.20891 0.93054 0.85252 0.98773 1.20749 0.90315 0.92730 0.90217 0.89333 1.46350 1.14197 1.53672 1.21217 1.19999 0.82173 0.78739 0.87490 1.90585 1.76422 1.42193 1.33161 1.22863 0.98589 0.96925 0.96548 1.21716 0.81833 0.90510 1.02633 1.92729 1.41403 1.86633 1.96845 1.22777 0.93925 1.00624 0.97066 1.22893 0.95877 1.02135 0.97056 1.22913 0.97413 0.98433 0.96898 1.22699 1.00726 0.92556 1.01931 1.22883 1.02957 1.04028 0.91687 1.23315 1.01558 0.96783 1.00762 0.93717 0.77960 0.94970 0.95753 0.74858 0.89964 0.89616 0.90690 0.88184 0.90830 0.89826 0.89308 0.90424 0.87358 0.89003 0.89583 0.89847 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.56 5.43 -59.91 -0.33 -18.89 16 10 C 0.15 3.03 5.80 -4.04 -0.02 3.01 16 11 C 0.16 2.95 2.59 -67.94 -0.18 2.77 16 12 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 13 N -0.70 -11.94 2.76 -53.81 -0.15 -12.09 16 14 C 0.53 8.72 5.76 -10.98 -0.06 8.65 16 15 O -0.54 -10.22 12.93 5.56 0.07 -10.15 16 16 C -0.15 -1.87 1.16 -154.85 -0.18 -2.05 16 17 C 0.09 1.17 6.86 37.16 0.26 1.42 16 18 F -0.20 -3.35 14.46 2.25 0.03 -3.32 16 19 C -0.11 -1.16 6.99 -25.92 -0.18 -1.34 16 20 C -0.14 -1.21 7.73 -25.90 -0.20 -1.41 16 21 C -0.12 -1.21 7.19 -25.90 -0.19 -1.40 16 22 C -0.16 -2.39 5.71 -90.62 -0.52 -2.91 16 23 C -0.18 -2.39 9.73 -26.74 -0.26 -2.65 16 24 C -0.19 -2.67 9.82 -26.74 -0.26 -2.93 16 25 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 26 H 0.39 10.51 7.33 -40.82 -0.30 10.21 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.41 7.21 6.07 -40.82 -0.25 6.97 16 30 H 0.08 0.82 7.34 -51.93 -0.38 0.44 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.10 1.22 7.44 -51.93 -0.39 0.83 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.61 7.65 -51.93 -0.40 0.21 16 36 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.11 1.50 8.11 -51.92 -0.42 1.08 16 39 H 0.09 1.26 6.67 -51.93 -0.35 0.91 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.12 1.89 5.02 -51.93 -0.26 1.63 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -31.65 336.85 -8.11 -39.76 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -6.48 Total: 15.61 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.04 Total: -6.14 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.25 Total: -58.39 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.03 Total: -3.32 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.65 -8.11 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754451739.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.801 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds