Wall clock time and date at job start Tue Mar 31 2020 06:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00165 * 2 1 4 4 H 1.48500 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47188 * 300.00132 * 3 2 1 6 6 H 1.48495 * 109.46987 * 60.00591 * 3 2 1 7 7 C 1.38806 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00587 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47589 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47486 * 295.00308 * 11 10 9 13 13 N 1.46503 * 109.46769 * 55.00287 * 11 10 9 14 14 C 1.34784 * 119.99794 * 204.99827 * 13 11 10 15 15 O 1.21281 * 119.99969 * 0.02562 * 14 13 11 16 16 C 1.50701 * 119.99831 * 179.97438 * 14 13 11 17 17 C 1.53006 * 112.90818 * 311.25235 * 16 14 13 18 18 F 1.39901 * 109.46987 * 48.75019 * 17 16 14 19 19 C 1.53779 * 113.61123 * 180.02562 * 16 14 13 20 20 C 1.53787 * 87.07963 * 220.01652 * 19 16 14 21 21 C 1.53779 * 113.61419 * 82.50381 * 16 14 13 22 22 C 1.52994 * 109.47317 * 174.99871 * 11 10 9 23 23 C 1.52996 * 117.50219 * 248.62258 * 22 11 10 24 24 C 1.52990 * 60.00328 * 252.50885 * 23 22 11 25 25 H 0.97007 * 119.99251 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99973 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46663 * 59.99825 * 10 9 7 28 28 H 1.08999 * 109.46771 * 300.00683 * 10 9 7 29 29 H 0.96996 * 120.00366 * 24.99512 * 13 11 10 30 30 H 1.08997 * 109.46800 * 168.75297 * 17 16 14 31 31 H 1.08999 * 109.46973 * 288.74953 * 17 16 14 32 32 H 1.08997 * 113.61646 * 105.47284 * 19 16 14 33 33 H 1.08998 * 113.69354 * 334.57592 * 19 16 14 34 34 H 1.09004 * 113.61202 * 139.98084 * 20 19 16 35 35 H 1.08994 * 113.61447 * 270.88515 * 20 19 16 36 36 H 1.09002 * 113.61557 * 25.43210 * 21 16 14 37 37 H 1.09004 * 113.61501 * 254.52631 * 21 16 14 38 38 H 1.09008 * 115.55202 * 34.33419 * 22 11 10 39 39 H 1.08997 * 117.50004 * 0.02562 * 23 22 11 40 40 H 1.09001 * 117.49882 * 145.02019 * 23 22 11 41 41 H 1.09003 * 117.50635 * 252.50854 * 24 23 22 42 42 H 1.09005 * 117.51694 * 107.48062 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 1 0.4986 -4.8139 0.9312 13 7 0.1430 -4.6757 -1.1312 14 6 -1.0815 -5.2366 -1.0786 15 8 -1.4212 -5.8600 -0.0953 16 6 -2.0288 -5.0881 -2.2412 17 6 -2.1537 -3.6425 -2.7267 18 9 -0.8772 -3.0948 -2.8938 19 6 -3.3830 -5.7840 -2.0251 20 6 -3.3068 -6.2167 -3.4988 21 6 -1.7783 -6.0986 -3.3729 22 6 1.8243 -6.1411 -0.1277 23 6 1.6625 -6.9272 -1.4303 24 6 1.0016 -7.4309 -0.1457 25 1 -0.4849 0.8402 0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.6853 -3.7149 0.8878 28 1 2.6840 -3.7141 -0.8921 29 1 0.4145 -4.1768 -1.9174 30 1 -2.6846 -3.6235 -3.6785 31 1 -2.7062 -3.0584 -1.9908 32 1 -4.1999 -5.0939 -1.8143 33 1 -3.3404 -6.6166 -1.3228 34 1 -3.6533 -7.2354 -3.6733 35 1 -3.7448 -5.4955 -4.1888 36 1 -1.2954 -7.0171 -3.0393 37 1 -1.3002 -5.6623 -4.2500 38 1 2.7980 -6.1720 0.3615 39 1 1.0144 -6.5027 -2.1970 40 1 2.5297 -7.4753 -1.7984 41 1 1.4340 -8.3105 0.3313 42 1 -0.0816 -7.3381 -0.0668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754451739.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:12 Heat of formation + Delta-G solvation = -46.041762 kcal Electronic energy + Delta-G solvation = -24100.929059 eV Core-core repulsion = 20610.493545 eV Total energy + Delta-G solvation = -3490.435514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.72540 -41.64734 -39.62146 -37.82432 -36.54536 -34.74670 -33.01273 -30.36041 -29.26974 -26.67499 -26.12382 -25.44035 -23.46508 -23.01486 -22.36286 -20.91586 -19.96906 -19.14073 -18.31017 -17.44999 -17.28827 -16.78100 -16.71177 -16.43269 -16.28215 -15.59342 -15.25136 -15.10283 -15.02721 -14.91090 -14.33797 -13.79192 -13.43664 -13.15585 -13.09353 -12.91675 -12.79319 -12.75253 -12.61945 -12.27677 -12.18312 -12.04227 -11.93991 -11.83139 -11.33990 -11.31332 -11.25106 -10.99025 -10.83928 -10.52509 -9.90466 -8.99363 -7.92246 -5.21656 1.47868 1.48581 1.58510 1.59589 2.26815 2.56322 2.94205 3.27823 3.38150 3.41818 3.50304 3.62435 3.81685 3.84908 3.98070 4.07254 4.14253 4.18127 4.28771 4.38776 4.48025 4.49452 4.62434 4.71940 4.76148 4.81320 4.84988 4.89058 5.02834 5.04225 5.10844 5.13320 5.15107 5.24959 5.37288 5.44731 5.50719 5.63526 6.27769 6.64628 7.29459 7.35129 8.07906 8.33164 9.30904 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.005941 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.080856 B = 4711.784538 C = 5849.070441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.150 3.850 11 C 0.173 3.827 12 H 0.057 0.943 13 N -0.701 5.701 14 C 0.523 3.477 15 O -0.574 6.574 16 C -0.152 4.152 17 C 0.083 3.917 18 F -0.219 7.219 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.171 4.171 23 C -0.161 4.161 24 C -0.185 4.185 25 H 0.249 0.751 26 H 0.374 0.626 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.409 0.591 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -15.344 -9.701 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.265 4.265 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.023 3.977 11 C 0.068 3.932 12 H 0.075 0.925 13 N -0.354 5.354 14 C 0.311 3.689 15 O -0.455 6.455 16 C -0.155 4.155 17 C 0.028 3.972 18 F -0.200 7.200 19 C -0.147 4.147 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.190 4.190 23 C -0.198 4.198 24 C -0.222 4.222 25 H 0.058 0.942 26 H 0.206 0.794 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.249 0.751 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.099 -15.648 -9.019 18.520 hybrid contribution 0.323 1.537 0.279 1.595 sum -3.776 -14.111 -8.740 17.023 Atomic orbital electron populations 1.69850 1.06573 1.25733 1.59341 1.25539 0.96360 1.00952 1.03629 0.85074 0.78250 0.79885 0.76508 1.19048 1.22037 1.22320 1.19645 0.91489 0.85155 1.41283 0.90516 1.42469 1.05590 1.00803 1.89386 1.21008 0.93431 0.84204 0.99027 1.20490 0.89807 0.93459 0.89447 0.92452 1.46367 1.14590 1.53800 1.20674 1.20715 0.82184 0.77820 0.88228 1.90568 1.76860 1.43433 1.34617 1.22999 0.98798 0.97549 0.96175 1.21967 0.80675 0.90178 1.04358 1.92674 1.43262 1.87122 1.96985 1.22804 0.92924 1.00060 0.98916 1.22868 0.94260 1.03665 0.95142 1.22934 0.99066 0.97193 0.95855 1.22622 1.01116 0.91214 1.04094 1.22956 1.03313 1.02735 0.90813 1.23253 1.00295 0.96881 1.01767 0.94207 0.79407 0.94566 0.94805 0.75075 0.85855 0.91175 0.90037 0.89773 0.89211 0.87698 0.89727 0.89235 0.85890 0.89426 0.87107 0.87851 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.62 13.06 21.65 0.28 -59.34 16 2 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 3 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 6 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 7 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -38.42 5.43 -343.45 -1.87 -40.28 16 10 C 0.15 6.18 5.80 86.38 0.50 6.68 16 11 C 0.17 6.32 2.59 44.99 0.12 6.44 16 12 H 0.06 2.43 7.58 -2.39 -0.02 2.42 16 13 N -0.70 -24.41 2.76 -442.54 -1.22 -25.63 16 14 C 0.52 17.60 5.76 87.66 0.51 18.11 16 15 O -0.57 -22.40 12.93 -3.03 -0.04 -22.44 16 16 C -0.15 -3.80 1.16 -52.40 -0.06 -3.86 16 17 C 0.08 2.15 6.86 71.98 0.49 2.64 16 18 F -0.22 -7.59 14.46 44.97 0.65 -6.94 16 19 C -0.11 -2.28 6.99 31.12 0.22 -2.06 16 20 C -0.12 -1.72 7.73 31.14 0.24 -1.48 16 21 C -0.11 -2.07 7.19 31.13 0.22 -1.85 16 22 C -0.17 -4.98 5.71 -10.80 -0.06 -5.04 16 23 C -0.16 -4.01 9.73 30.59 0.30 -3.72 16 24 C -0.19 -5.09 9.82 30.59 0.30 -4.79 16 25 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 26 H 0.37 21.08 7.33 -92.70 -0.68 20.40 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.41 14.60 6.07 -92.71 -0.56 14.04 16 30 H 0.12 2.15 7.34 -2.39 -0.02 2.13 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.08 2.04 7.44 -2.39 -0.02 2.03 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.08 7.65 -2.39 -0.02 1.06 16 36 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 37 H 0.09 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.12 3.20 8.11 -2.38 -0.02 3.19 16 39 H 0.09 2.27 6.67 -2.39 -0.02 2.26 16 40 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.09 3.07 5.02 -2.38 -0.01 3.06 16 Total: -1.00 -69.47 336.85 3.71 -65.76 By element: Atomic # 1 Polarization: 45.98 SS G_CDS: -0.21 Total: 45.77 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 4.08 Total: -5.59 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -2.80 Total: -125.25 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.04 Total: -22.44 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.65 Total: -6.94 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -69.47 3.71 -65.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754451739.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.717 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds