Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48504 * 109.47070 * 274.99409 * 3 2 1 5 5 H 1.48497 * 109.47377 * 34.99369 * 3 2 1 6 6 H 1.48497 * 109.47019 * 154.99926 * 3 2 1 7 7 C 1.38813 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00038 * 174.96308 * 7 2 1 9 9 N 1.36930 * 120.00085 * 354.96025 * 7 2 1 10 10 C 1.46498 * 119.99998 * 185.24974 * 9 7 2 11 11 C 1.52999 * 112.90628 * 44.74345 * 10 9 7 12 12 N 1.46504 * 109.47073 * 72.13723 * 11 10 9 13 13 C 1.34777 * 119.99452 * 184.92153 * 12 11 10 14 14 O 1.21276 * 120.00514 * 4.96478 * 13 12 11 15 15 C 1.50704 * 119.99396 * 184.96847 * 13 12 11 16 16 C 1.53003 * 112.85010 * 55.65307 * 15 13 12 17 17 F 1.39903 * 109.46970 * 294.48962 * 16 15 13 18 18 C 1.53782 * 113.61667 * 284.33899 * 15 13 12 19 19 C 1.53781 * 87.08364 * 220.02123 * 18 15 13 20 20 C 1.53780 * 113.61335 * 186.84208 * 15 13 12 21 21 C 1.53782 * 113.61815 * 273.48773 * 10 9 7 22 22 C 1.53774 * 87.08194 * 270.88525 * 21 10 9 23 23 C 1.53781 * 87.08474 * 334.56369 * 22 21 10 24 24 H 0.97006 * 119.99655 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00436 * 5.25533 * 9 7 2 26 26 H 1.09007 * 109.46888 * 192.13363 * 11 10 9 27 27 H 1.08996 * 109.47247 * 312.13085 * 11 10 9 28 28 H 0.96998 * 120.00052 * 4.91465 * 12 11 10 29 29 H 1.08997 * 109.47399 * 54.49368 * 16 15 13 30 30 H 1.09000 * 109.46994 * 174.49766 * 16 15 13 31 31 H 1.08999 * 113.61000 * 334.57352 * 18 15 13 32 32 H 1.09000 * 113.60808 * 105.47320 * 18 15 13 33 33 H 1.08999 * 113.61147 * 270.88512 * 19 18 15 34 34 H 1.08990 * 113.61391 * 139.98365 * 19 18 15 35 35 H 1.08998 * 113.61805 * 254.53188 * 20 15 13 36 36 H 1.09003 * 113.61177 * 25.43746 * 20 15 13 37 37 H 1.08999 * 113.60886 * 25.43828 * 21 10 9 38 38 H 1.09002 * 113.61316 * 156.33561 * 21 10 9 39 39 H 1.09003 * 113.61139 * 220.01478 * 22 21 10 40 40 H 1.08999 * 113.61601 * 89.11924 * 22 21 10 41 41 H 1.08992 * 113.61670 * 270.88457 * 23 22 21 42 42 H 1.08998 * 113.61351 * 139.98043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2041 -0.0816 9 7 1.3295 -2.3857 0.1052 10 6 2.0662 -3.6466 0.2217 11 6 3.2276 -3.5683 1.2146 12 7 2.6999 -3.5179 2.5804 13 6 3.5389 -3.3457 3.6210 14 8 4.7179 -3.1425 3.4222 15 6 3.0119 -3.4057 5.0316 16 6 2.2739 -4.7112 5.3350 17 9 1.1153 -4.7842 4.5542 18 6 2.2382 -2.1457 5.4544 19 6 2.9259 -2.2784 6.8234 20 6 4.0554 -3.0265 6.0956 21 6 2.4548 -4.2605 -1.1337 22 6 1.1001 -4.9876 -1.1039 23 6 1.1607 -4.8723 0.4284 24 1 -0.4850 0.8401 -0.0004 25 1 0.3595 -2.3893 0.1022 26 1 3.8616 -4.4479 1.1023 27 1 3.8137 -2.6705 1.0181 28 1 1.7467 -3.6083 2.7356 29 1 2.9215 -5.5569 5.1041 30 1 2.0029 -4.7385 6.3905 31 1 2.5285 -1.2503 4.9048 32 1 1.1584 -2.2889 5.4925 33 1 2.3755 -2.8994 7.5301 34 1 3.2376 -1.3249 7.2497 35 1 4.4425 -3.8804 6.6515 36 1 4.8424 -2.3717 5.7214 37 1 2.5398 -3.5281 -1.9364 38 1 3.3119 -4.9318 -1.0793 39 1 1.1476 -6.0143 -1.4668 40 1 0.2879 -4.4161 -1.5531 41 1 1.6639 -5.7108 0.9097 42 1 0.2009 -4.6338 0.8866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754987046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = -41.403207 kcal Electronic energy + Delta-G solvation = -23883.046164 eV Core-core repulsion = 20392.811793 eV Total energy + Delta-G solvation = -3490.234371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.73352 -40.21429 -38.87610 -37.28907 -33.82745 -33.25319 -30.09655 -29.17236 -27.14395 -25.64650 -25.17497 -24.55985 -23.76984 -21.73446 -20.54064 -18.86990 -18.13535 -17.40868 -17.06741 -16.07867 -15.91435 -15.54956 -15.26196 -15.01889 -14.51450 -14.26584 -14.12751 -13.94551 -13.57635 -13.06609 -12.71792 -12.42815 -12.16336 -11.99420 -11.85898 -11.71763 -11.41404 -11.33182 -11.05379 -11.03743 -10.82176 -10.45933 -10.41574 -10.37057 -10.25492 -9.96525 -9.65509 -9.39833 -9.29852 -8.85192 -8.40392 -7.01203 -5.80803 -3.09380 2.96888 3.41984 3.48744 3.51446 3.61802 4.23800 4.36477 4.46778 4.55908 4.68864 4.80430 4.90179 5.08901 5.23412 5.27869 5.31032 5.41520 5.46814 5.53962 5.59042 5.68295 5.77810 5.82344 5.86377 5.97815 6.04440 6.08850 6.17849 6.22234 6.31950 6.37893 6.39836 6.55893 6.75606 6.95125 7.00805 7.11294 7.72686 8.07024 8.37775 8.69104 9.49742 10.03813 10.39368 11.41226 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013065 B = 0.006804 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.568540 B = 4114.448384 C = 5314.035534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.697 5.697 10 C 0.177 3.823 11 C 0.124 3.876 12 N -0.698 5.698 13 C 0.524 3.476 14 O -0.551 6.551 15 C -0.148 4.148 16 C 0.092 3.908 17 F -0.207 7.207 18 C -0.118 4.118 19 C -0.144 4.144 20 C -0.104 4.104 21 C -0.160 4.160 22 C -0.131 4.131 23 C -0.147 4.147 24 H 0.255 0.745 25 H 0.387 0.613 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.405 0.595 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -10.972 11.163 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.337 5.337 10 C 0.084 3.916 11 C -0.001 4.001 12 N -0.347 5.347 13 C 0.308 3.692 14 O -0.430 6.430 15 C -0.151 4.151 16 C 0.037 3.963 17 F -0.188 7.188 18 C -0.155 4.155 19 C -0.181 4.181 20 C -0.141 4.141 21 C -0.201 4.201 22 C -0.168 4.168 23 C -0.186 4.186 24 H 0.065 0.935 25 H 0.222 0.778 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.241 0.759 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.885 -10.672 10.984 15.800 hybrid contribution -0.383 0.960 -0.151 1.045 sum 3.502 -9.712 10.833 14.964 Atomic orbital electron populations 1.69674 1.05040 1.25647 1.57380 1.24706 0.95431 0.97538 1.02744 0.86258 0.78964 0.84120 0.77460 1.21767 1.21776 1.20626 1.19129 0.91456 0.83780 1.42252 0.91073 1.42086 1.05353 0.99564 1.86703 1.20781 0.91278 0.87090 0.92459 1.21684 0.96731 1.01165 0.80531 1.45858 1.11147 1.71554 1.06156 1.20009 0.86343 0.76772 0.86032 1.90648 1.16811 1.49667 1.85852 1.22827 1.00290 0.97530 0.94493 1.21664 0.83310 0.96434 0.94941 1.92772 1.51449 1.97331 1.77253 1.22872 0.99963 0.96274 0.96430 1.22902 0.97606 1.01207 0.96417 1.22741 0.96245 1.00692 0.94459 1.23569 0.96103 0.99561 1.00912 1.22646 0.98728 0.99244 0.96185 1.23241 1.00316 0.98275 0.96743 0.93542 0.77808 0.92971 0.90685 0.75904 0.90243 0.89716 0.88825 0.90190 0.89998 0.90738 0.90938 0.88222 0.91037 0.91476 0.92734 0.90203 0.90493 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.07 55.49 0.73 -26.61 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.54 29.56 -169.99 -5.02 17.51 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.32 9.28 -15.06 -0.14 -6.46 16 8 H 0.07 1.93 6.68 -52.49 -0.35 1.58 16 9 N -0.70 -16.54 5.28 -46.48 -0.25 -16.79 16 10 C 0.18 3.40 1.01 -131.00 -0.13 3.27 16 11 C 0.12 2.39 4.99 -4.04 -0.02 2.37 16 12 N -0.70 -12.57 5.23 -60.29 -0.32 -12.89 16 13 C 0.52 9.24 6.85 -10.98 -0.08 9.16 16 14 O -0.55 -11.48 15.95 5.56 0.09 -11.39 16 15 C -0.15 -1.94 1.02 -154.84 -0.16 -2.10 16 16 C 0.09 0.97 6.73 37.16 0.25 1.22 16 17 F -0.21 -2.71 15.60 2.25 0.04 -2.67 16 18 C -0.12 -1.52 7.18 -25.92 -0.19 -1.70 16 19 C -0.14 -1.42 7.73 -25.92 -0.20 -1.62 16 20 C -0.10 -1.18 6.95 -25.92 -0.18 -1.36 16 21 C -0.16 -2.81 7.43 -25.92 -0.19 -3.00 16 22 C -0.13 -2.08 7.99 -25.92 -0.21 -2.29 16 23 C -0.15 -2.38 6.72 -25.91 -0.17 -2.56 16 24 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.39 9.84 7.86 -40.82 -0.32 9.52 16 26 H 0.05 0.93 7.93 -51.92 -0.41 0.52 16 27 H 0.07 1.69 6.52 -51.93 -0.34 1.35 16 28 H 0.40 7.15 6.51 -40.82 -0.27 6.88 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.66 7.32 -51.93 -0.38 0.28 16 31 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 32 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 33 H 0.08 0.64 7.61 -51.93 -0.40 0.25 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.10 1.33 7.53 -51.93 -0.39 0.94 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.07 1.04 7.95 -51.93 -0.41 0.63 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.12 8.10 -51.93 -0.42 0.69 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -30.76 340.82 -7.73 -38.49 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -6.62 Total: 14.59 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.51 Total: -5.39 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.16 Total: -56.28 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.76 -7.73 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754987046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.910 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds